MD17G1241500.v1.1

zinc finger

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
29071258 .. 29074542
3285 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1241500.v1.1.491

Sequence Viewer

Length: 1536 bp
ATGGCGGGAAGGTGGGACGTTGGGTTTCCAAAGACTAGCGCTAGTAGTCTTAGAGAGCAAGCAACAAGAACAATTCTTCGCAATGTGAGGTCACAAGGACACACATATGTCGAGCTACGAGAAGAGGGGAAAAAGTTCATTTTCTTCTGTACTTTGTGCCTTGCGCCATGTTACAGTGATAAGGTGTTGTTTGATCACTTGAAGGGTAATCTTCACAATGACAGGTTAGCTGCTGCTAAGGTTACTCTCTTGCAATCGAACCCGTGGCCTTTTAACGATGGTGTGGTTTTCTTTCATAATTCAGATGAGACTGATAAGCAGTTGGTGATTCCAGGTGGCAATAAACAAAAGATTTTGAAGTCTCATGACGATGAAAACAATCTTGCTGTTGTCAAATATGGGGAAAATTTGATATCTAATGGCAATGAGCATTTTGGTGCTGATGGTCATGAATCTAATGAGCATTCTGATGGAGTGAATTCCTCTGTTGTGATCCCTAATATTCTGGTTAGGGATGAAATTACTGACATAGAAGTGAAGCAGGTAGGTTTTGGACAAATTGCTGCAAGGTTCCTCGAGCAGGATGAGGTGTCAAATTTTATTAGTAGAATATGGTGTGAATGGTTGGGGACAAGGACAGCTAGCAATGATTTACTCAAGGTTCCTGAGAACAACTTTGCTGTTGTTACCTTCAGTTACAATATTGATTTGGGTAGAAAGGGGTTACTTGATGATGTAAGGATGCTTCTCTCATCCAGTCCTACAGAAGAAACAGAGGGCAGCAGCGGTAAGAGAAAAAAGTTCTTCTCTGACCCCGAGGATATTAGTGAATCTCTAAGTAATCAGTTTGATTCATGCGGGGAAGATTCATCTGCTTCCAGTGGGTCAACGTCAAGATTGCTTTTAGACCGGTATGATGATCAGCTTCTGCACACAAGATTTATTAACAAGTCAATGAGGAGAGAGTTAAGACGGCAACAGCGTTTAGCTTCGGGCAGAACGTGTGATATCTGTCAACAGAAGATGCTTCCTAGGAAAGATGTAGCAACTCTCATAAATTTGAAGACAGGAAGGCTTGCTTGCAGTAGTCGAAATGTGAATGGGGCTTTTCATGTGTTTCATACTTCCTGCCTTGTACACTGGATACTTCTGTGTGAGGTTGAGATGATCACAAATCAGTCCGCTAGTTCAAAAGTGAGAAGAAGATCTAGGAGAAAAACTGCAGCCAAGTGCAATGGAAAAGATGGTCAGATGATAGCCTTGAGCTCACAACTGTATTCTGTATTCTGCCCAGAGTGTCAGGGCACTGGTATCCTCATAGATAAAGATGACCTGGAGAAACCAAATGTCCCTTTGTATCAGCTGTTCAAGTATAAGATAAAGGTGAGTGATGCACGTAGAGCATGGATGAAGAGTCCTGAAATGTTGGAGAATTGCTCGACGGGTTTTCATTTCCCTTCCCAATCTGAAGAGGGAATCGAGGTTTCTGAAAAGGTGAAACCGTTGAAGTTGCTGCACTTCTACAGAGCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

512

Amino Acids

57.71

Weight (kDa)

7.88

Isoelectric Point (pI)

50.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 532
AciI CCGC 4 cut(s) 5, 786, 858, 1182
AclWI GGATC 1 cut(s) 487
AcsI RAATTY 4 cut(s) 406, 478, 595, 1057
AcuI CTGAAG 2 cut(s) 676, 1488
AfaI GTAC 2 cut(s) 151, 1137
AfeI AGCGCT 1 cut(s) 40
AfiI CCNNNNNNNGG 1 cut(s) 580
AflIII ACRYGT 1 cut(s) 1001
AgeI ACCGGT 1 cut(s) 909
AgsI TTSAA 6 cut(s) 202, 358, 1063, 1191, 1369, 1507
AjnI CCWGG 2 cut(s) 331, 1332
AluBI AGCT 7 cut(s) 115, 230, 641, 925, 989, 1266, 1363
AluI AGCT 7 cut(s) 115, 230, 641, 925, 989, 1266, 1363
Alw21I GWGCWC 1 cut(s) 1268
Alw26I GTCTC 2 cut(s) 302, 366
AlwI GGATC 1 cut(s) 487
AlwNI CAGNNNCTG 1 cut(s) 928
Ama87I CYCGRG 2 cut(s) 575, 815
Aor51HI AGCGCT 1 cut(s) 40
AoxI GGCC 1 cut(s) 266
ApeKI GCWGC 7 cut(s) 230, 233, 563, 780, 783, 1223, 1513
ApoI RAATTY 4 cut(s) 406, 478, 595, 1057
AsiGI ACCGGT 1 cut(s) 909
Asp700I GAANNNNTTC 1 cut(s) 134
AspA2I CCTAGG 1 cut(s) 1031
AspLEI GCGC 2 cut(s) 41, 166
AsuHPI GGTGA 3 cut(s) 337, 1396, 1507
AsuNHI GCTAGC 1 cut(s) 641
AvaI CYCGRG 2 cut(s) 575, 815
AvrII CCTAGG 1 cut(s) 1031
BaeGI GKGCMC 1 cut(s) 1307
BaeI ACNNNNGTAYC 2 cut(s) 1136, 1169
BanII GRGCYC 1 cut(s) 1268
BarI GAAGNNNNNNTAC 2 cut(s) 729, 761
BbsI GAAGAC 1 cut(s) 1070
Bbv12I GWGCWC 1 cut(s) 1268
BbvI GCAGC 7 cut(s) 217, 220, 550, 792, 795, 1235, 1500
BccI CCATC 4 cut(s) 272, 437, 464, 1238
BceAI ACGGC 1 cut(s) 989
BciT130I CCWGG 2 cut(s) 333, 1334
BciVI GTATCC 2 cut(s) 1137, 1322
BclI TGATCA 3 cut(s) 193, 919, 1167
BcoDI GTCTC 2 cut(s) 302, 366
BfaI CTAG 6 cut(s) 36, 42, 642, 1032, 1185, 1209
BfmI CTRYAG 3 cut(s) 762, 1221, 1522
BfoI RGCGCY 1 cut(s) 42
BfuAI ACCTGC 1 cut(s) 532
BfuI GTATCC 2 cut(s) 1137, 1322
BglII AGATCT 1 cut(s) 1205
BisI GCNGC 7 cut(s) 231, 234, 564, 781, 784, 1224, 1514
BlnI CCTAGG 1 cut(s) 1031
BlsI GCNGC 7 cut(s) 232, 235, 565, 782, 785, 1225, 1515
Bme1390I CCNGG 2 cut(s) 333, 1334
BmeT110I CYCGRG 2 cut(s) 575, 815
BmiI GGNNCC 2 cut(s) 572, 663
BmrFI CCNGG 2 cut(s) 333, 1334
BmsI GCATC 3 cut(s) 732, 1014, 1381
BmtI GCTAGC 1 cut(s) 645
BpiI GAAGAC 1 cut(s) 1070
BplI GAGNNNNNCTC 2 cut(s) 1421, 1453
BpmI CTGGAG 1 cut(s) 1355
Bpu10I CCTNAGC 1 cut(s) 237
BpuEI CTTGAG 2 cut(s) 641, 1282
BsaAI YACGTR 1 cut(s) 1397
BsaJI CCNNGG 3 cut(s) 263, 816, 1031
BsaWI WCCGGW 1 cut(s) 909
Bsc4I CCNNNNNNNGG 1 cut(s) 580
Bse118I RCCGGY 1 cut(s) 909
Bse1I ACTGG 4 cut(s) 756, 879, 1145, 1312
Bse3DI GCAATG 4 cut(s) 88, 430, 652, 1240
BseBI CCWGG 2 cut(s) 333, 1334
BseDI CCNNGG 3 cut(s) 263, 816, 1031
BseGI GGATG 5 cut(s) 520, 589, 747, 752, 1413
BseLI CCNNNNNNNGG 1 cut(s) 580
BseMI GCAATG 4 cut(s) 88, 430, 652, 1240
BseMII CTCAG 1 cut(s) 657
BseNI ACTGG 4 cut(s) 756, 879, 1145, 1312
BseRI GAGGAG 1 cut(s) 973
BseSI GKGCMC 1 cut(s) 1307
BseXI GCAGC 7 cut(s) 217, 220, 550, 792, 795, 1235, 1500
BsgI GTGCAG 2 cut(s) 914, 1499
BshFI GGCC 1 cut(s) 268
BshTI ACCGGT 1 cut(s) 909
BsiHKAI GWGCWC 1 cut(s) 1268
BsiHKCI CYCGRG 2 cut(s) 575, 815
BsiSI CCGG 1 cut(s) 910
BslFI GGGAC 3 cut(s) 29, 643, 1334
BslI CCNNNNNNNGG 1 cut(s) 580
BsmAI GTCTC 2 cut(s) 302, 366
BsmFI GGGAC 3 cut(s) 29, 643, 1334
BsmI GAATGC 1 cut(s) 463
BsnI GGCC 1 cut(s) 268
BsoBI CYCGRG 2 cut(s) 575, 815
Bsp1286I GDGCHC 2 cut(s) 1268, 1307
Bsp1407I TGTACA 1 cut(s) 1135
Bsp143I GATC 5 cut(s) 193, 492, 919, 1167, 1205
BspACI CCGC 4 cut(s) 5, 786, 858, 1182
BspANI GGCC 1 cut(s) 268
BspCNI CTCAG 1 cut(s) 658
BspHI TCATGA 2 cut(s) 364, 448
BspLI GGNNCC 2 cut(s) 572, 663
BspMAI CTGCAG 1 cut(s) 1225
BspMI ACCTGC 1 cut(s) 532
BspOI GCTAGC 1 cut(s) 645
BspPI GGATC 1 cut(s) 487
BsrDI GCAATG 4 cut(s) 88, 430, 652, 1240
BsrFI RCCGGY 1 cut(s) 909
BsrGI TGTACA 1 cut(s) 1135
BsrI ACTGG 4 cut(s) 756, 879, 1145, 1312
BssAI RCCGGY 1 cut(s) 909
BssECI CCNNGG 3 cut(s) 263, 816, 1031
BssMI GATC 5 cut(s) 193, 492, 919, 1167, 1205
BssT1I CCWWGG 1 cut(s) 1031
Bst2UI CCWGG 2 cut(s) 333, 1334
Bst4CI ACNGT 3 cut(s) 176, 1275, 1503
Bst6I CTCTTC 3 cut(s) 117, 1406, 1464
BstAUI TGTACA 1 cut(s) 1135
BstBAI YACGTR 1 cut(s) 1397
BstC8I GCNNGC 4 cut(s) 60, 643, 1077, 1081
BstDEI CTNAG 4 cut(s) 50, 237, 666, 836
BstDSI CCRYGG 1 cut(s) 263
BstENI CCTNNNNNAGG 1 cut(s) 578
BstF5I GGATG 5 cut(s) 520, 589, 747, 752, 1413
BstH2I RGCGCY 1 cut(s) 42
BstHHI GCGC 2 cut(s) 41, 166
BstKTI GATC 5 cut(s) 196, 495, 922, 1170, 1208
BstMAI GTCTC 2 cut(s) 302, 366
BstMBI GATC 5 cut(s) 193, 492, 919, 1167, 1205
BstMWI GCNNNNNNNGC 1 cut(s) 1400
BstNI CCWGG 2 cut(s) 333, 1334
BstSCI CCNGG 2 cut(s) 331, 1332
BstSFI CTRYAG 3 cut(s) 762, 1221, 1522
BstSLI GKGCMC 1 cut(s) 1307
BstV1I GCAGC 7 cut(s) 217, 220, 550, 792, 795, 1235, 1500
BstV2I GAAGAC 1 cut(s) 1070
BstX2I RGATCY 1 cut(s) 1205
BstYI RGATCY 1 cut(s) 1205
BsuI GTATCC 2 cut(s) 1137, 1322
BsuRI GGCC 1 cut(s) 268
BtgI CCRYGG 1 cut(s) 263
BtsCI GGATG 5 cut(s) 520, 589, 747, 752, 1413
BtsIMutI CAGTG 4 cut(s) 181, 886, 1138, 1305
BveI ACCTGC 1 cut(s) 532
Cac8I GCNNGC 4 cut(s) 60, 643, 1077, 1081
CaiI CAGNNNCTG 1 cut(s) 928
CciI TCATGA 2 cut(s) 364, 448
CfoI GCGC 2 cut(s) 41, 166
Cfr10I RCCGGY 1 cut(s) 909
Csp6I GTAC 2 cut(s) 150, 1136
CspAI ACCGGT 1 cut(s) 909
CviAII CATG 6 cut(s) 168, 365, 449, 855, 1112, 1404
CviQI GTAC 2 cut(s) 150, 1136
DdeI CTNAG 4 cut(s) 50, 237, 666, 836
DpnI GATC 5 cut(s) 195, 494, 921, 1169, 1207
DpnII GATC 5 cut(s) 193, 492, 919, 1167, 1205
Eam1104I CTCTTC 3 cut(s) 117, 1406, 1464
EarI CTCTTC 3 cut(s) 117, 1406, 1464
Ecl136II GAGCTC 1 cut(s) 1266
Eco130I CCWWGG 1 cut(s) 1031
Eco24I GRGCYC 1 cut(s) 1268
Eco32I GATATC 2 cut(s) 414, 1009
Eco47III AGCGCT 1 cut(s) 40
Eco53kI GAGCTC 1 cut(s) 1266
Eco57I CTGAAG 2 cut(s) 676, 1488
Eco88I CYCGRG 2 cut(s) 575, 815
EcoICRI GAGCTC 1 cut(s) 1266
EcoNI CCTNNNNNAGG 1 cut(s) 578
EcoRI GAATTC 1 cut(s) 478
EcoRII CCWGG 2 cut(s) 331, 1332
EcoRV GATATC 2 cut(s) 414, 1009
EcoT14I CCWWGG 1 cut(s) 1031
EcoT38I GRGCYC 1 cut(s) 1268
ErhI CCWWGG 1 cut(s) 1031
FaeI CATG 6 cut(s) 171, 368, 452, 858, 1115, 1407
FalI AAGNNNNNCTT 2 cut(s) 1063, 1095
FaqI GGGAC 3 cut(s) 29, 643, 1334
FatI CATG 6 cut(s) 167, 364, 448, 854, 1111, 1403
FauI CCCGC 1 cut(s) 851
FauNDI CATATG 1 cut(s) 106
FbaI TGATCA 3 cut(s) 193, 919, 1167
Fnu4HI GCNGC 7 cut(s) 231, 234, 564, 781, 784, 1224, 1514
FokI GGATG 5 cut(s) 527, 596, 739, 754, 1420
FriOI GRGCYC 1 cut(s) 1268
Fsp4HI GCNGC 7 cut(s) 231, 234, 564, 781, 784, 1224, 1514
FspBI CTAG 6 cut(s) 36, 42, 642, 1032, 1185, 1209
GlaI GCGC 2 cut(s) 40, 165
GluI GCNGC 7 cut(s) 231, 234, 564, 781, 784, 1224, 1514
GsuI CTGGAG 1 cut(s) 1355
HaeII RGCGCY 1 cut(s) 42
HaeIII GGCC 1 cut(s) 268
HapII CCGG 1 cut(s) 910
HhaI GCGC 2 cut(s) 41, 166
Hin1II CATG 6 cut(s) 171, 368, 452, 858, 1115, 1407
Hin6I GCGC 2 cut(s) 39, 164
HinP1I GCGC 2 cut(s) 39, 164
HincII GTYRAC 2 cut(s) 888, 1016
HindII GTYRAC 2 cut(s) 888, 1016
HinfI GANTC 7 cut(s) 328, 452, 830, 851, 866, 1414, 1476
HpaII CCGG 1 cut(s) 910
HphI GGTGA 3 cut(s) 337, 1396, 1507
Hpy166II GTNNAC 3 cut(s) 888, 1016, 1138
Hpy188I TCNGA 6 cut(s) 304, 469, 811, 1251, 1468, 1489
Hpy188III TCNNGA 5 cut(s) 365, 449, 665, 894, 1418
Hpy8I GTNNAC 3 cut(s) 888, 1016, 1138
Hpy99I CGWCG 1 cut(s) 1444
HpyAV CCTTC 5 cut(s) 3, 196, 700, 1065, 1467
HpyCH4III ACNGT 3 cut(s) 176, 1275, 1503
HpyCH4IV ACGT 4 cut(s) 18, 890, 1001, 1396
HpyCH4V TGCA 8 cut(s) 253, 566, 931, 1083, 1223, 1233, 1394, 1516
HpyF10VI GCNNNNNNNGC 1 cut(s) 1400
HpyF3I CTNAG 4 cut(s) 50, 237, 666, 836
HpySE526I ACGT 4 cut(s) 18, 890, 1001, 1396
Hsp92II CATG 6 cut(s) 171, 368, 452, 858, 1115, 1407
HspAI GCGC 2 cut(s) 39, 164
Ksp22I TGATCA 3 cut(s) 193, 919, 1167
Kzo9I GATC 5 cut(s) 193, 492, 919, 1167, 1205
Lsp1109I GCAGC 7 cut(s) 217, 220, 550, 792, 795, 1235, 1500
LweI GCATC 3 cut(s) 732, 1014, 1381
MaeI CTAG 6 cut(s) 36, 42, 642, 1032, 1185, 1209
MaeII ACGT 4 cut(s) 18, 890, 1001, 1396
MaeIII GTNAC 6 cut(s) 90, 170, 241, 685, 695, 723
MalI GATC 5 cut(s) 195, 494, 921, 1169, 1207
MboI GATC 5 cut(s) 193, 492, 919, 1167, 1205
MflI RGATCY 1 cut(s) 1205
MhlI GDGCHC 2 cut(s) 1268, 1307
MluCI AATT 9 cut(s) 72, 298, 406, 478, 519, 558, 595, 1057, 1432
MlyI GAGTC 1 cut(s) 1423
MmeI TCCRAC 1 cut(s) 1407
MroXI GAANNNNTTC 1 cut(s) 134
MseI TTAA 3 cut(s) 273, 945, 968
MslI CAYNNNNRTG 5 cut(s) 105, 369, 435, 468, 533
MspA1I CMGCKG 2 cut(s) 786, 1363
MspI CCGG 1 cut(s) 910
MspR9I CCNGG 2 cut(s) 333, 1334
Mva1269I GAATGC 1 cut(s) 463
MvaI CCWGG 2 cut(s) 333, 1334
MwoI GCNNNNNNNGC 1 cut(s) 1400
NdeI CATATG 1 cut(s) 106
NdeII GATC 5 cut(s) 193, 492, 919, 1167, 1205
NheI GCTAGC 1 cut(s) 641
NlaIII CATG 6 cut(s) 171, 368, 452, 858, 1115, 1407
NlaIV GGNNCC 2 cut(s) 572, 663
NmuCI GTSAC 1 cut(s) 90
PaeR7I CTCGAG 1 cut(s) 575
PagI TCATGA 2 cut(s) 364, 448
PcsI WCGNNNNNNNCGW 2 cut(s) 979, 998
PctI GAATGC 1 cut(s) 463
PdmI GAANNNNTTC 1 cut(s) 134
PfeI GAWTC 6 cut(s) 328, 452, 830, 851, 866, 1476
PinAI ACCGGT 1 cut(s) 909
PkrI GCNGC 7 cut(s) 232, 235, 565, 782, 785, 1225, 1515
PleI GAGTC 1 cut(s) 1422
PpsI GAGTC 1 cut(s) 1422
Ppu21I YACGTR 1 cut(s) 1397
Psp124BI GAGCTC 1 cut(s) 1268
Psp6I CCWGG 2 cut(s) 331, 1332
PspGI CCWGG 2 cut(s) 331, 1332
PspN4I GGNNCC 2 cut(s) 572, 663
PspXI VCTCGAGB 1 cut(s) 575
PsrI GAACNNNNNNTAC 2 cut(s) 1349, 1381
PstI CTGCAG 1 cut(s) 1225
PstNI CAGNNNCTG 1 cut(s) 928
PsuI RGATCY 1 cut(s) 1205
PvuII CAGCTG 1 cut(s) 1363
RsaI GTAC 2 cut(s) 151, 1137
RsaNI GTAC 2 cut(s) 150, 1136
RseI CAYNNNNRTG 5 cut(s) 105, 369, 435, 468, 533
SacI GAGCTC 1 cut(s) 1268
SaqAI TTAA 3 cut(s) 273, 945, 968
SatI GCNGC 7 cut(s) 231, 234, 564, 781, 784, 1224, 1514
Sau3AI GATC 5 cut(s) 193, 492, 919, 1167, 1205
SchI GAGTC 1 cut(s) 1423
ScrFI CCNGG 2 cut(s) 333, 1334
SduI GDGCHC 2 cut(s) 1268, 1307
SfaNI GCATC 3 cut(s) 732, 1014, 1381
SfcI CTRYAG 3 cut(s) 762, 1221, 1522
Sfr274I CTCGAG 1 cut(s) 575
SlaI CTCGAG 1 cut(s) 575
SmiMI CAYNNNNRTG 5 cut(s) 105, 369, 435, 468, 533
SmlI CTYRAG 3 cut(s) 575, 656, 1261
SmoI CTYRAG 3 cut(s) 575, 656, 1261
Sse9I AATT 9 cut(s) 72, 298, 406, 478, 519, 558, 595, 1057, 1432
SsiI CCGC 4 cut(s) 5, 786, 858, 1182
SspI AATATT 2 cut(s) 502, 703
SspMI CTAG 6 cut(s) 36, 42, 642, 1032, 1185, 1209
SstI GAGCTC 1 cut(s) 1268
StyD4I CCNGG 2 cut(s) 331, 1332
StyI CCWWGG 1 cut(s) 1031
TaaI ACNGT 3 cut(s) 176, 1275, 1503
TaiI ACGT 4 cut(s) 21, 893, 1004, 1399
TaqI TCGA 6 cut(s) 111, 257, 576, 1090, 1439, 1479
TasI AATT 9 cut(s) 72, 298, 406, 478, 519, 558, 595, 1057, 1432
TatI WGTACW 2 cut(s) 149, 1135
TfiI GAWTC 6 cut(s) 328, 452, 830, 851, 866, 1476
Tru1I TTAA 3 cut(s) 273, 945, 968
Tru9I TTAA 3 cut(s) 273, 945, 968
TscAI CASTG 4 cut(s) 181, 886, 1145, 1312
TseFI GTSAC 1 cut(s) 90
TseI GCWGC 7 cut(s) 230, 233, 563, 780, 783, 1223, 1513
Tsp45I GTSAC 1 cut(s) 90
TspRI CASTG 4 cut(s) 181, 886, 1145, 1312
XagI CCTNNNNNAGG 1 cut(s) 578
XapI RAATTY 4 cut(s) 406, 478, 595, 1057
XhoI CTCGAG 1 cut(s) 575
XmaJI CCTAGG 1 cut(s) 1031
XmnI GAANNNNTTC 1 cut(s) 134
XspI CTAG 6 cut(s) 36, 42, 642, 1032, 1185, 1209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.