Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009338

Physical Location & Seq

Genomic Coordinates Reverse (-)

42199977 .. 42203512

Gene Structure 3536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG326800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGGCGGGAAGGTGGGATCTTGGCCTTCCAAAGGCTAAAGCTTGTAGTCTTCGAGAGCAAGCAACAAGAACAATTCTTCGCAATGTGAGGTCACAAGGGCACACATATGTTGAGGTCAGGGAAGATGGGAAGAAGTTCATTTTCTTCTGTACTCTGTGTCTTGCACCCTGCTATAGTGATAAGGTGCTGTTTGATCACTTGAAGGGTAATCTTCATAATGAGAGATTGGCTGCTGCTAAGGTTACTCTTTTACGACCAAATCCTTGGCCTTTCAATGATGGTGTGGTTTTCTTTGACAATTCATATGAGACTGATAGAGTGTTAGTGACTCCAGATGACAATAAATTTAGGCTGTTGGAGTCTCATGACAATGAGAACAATCTTGCTATTGTCAAATATGGGGATAATCTGAATACCAATGGCTATGATCATTGTGGTGTTGATGAGCGTGAATGTAATGAGTATATAGATTCGCCAGGCTTGCATTCAAATGTTGGAGTTAAATCCTTTGTTGAGAATTCAACTGCTGATGGAGCAATTTCCTCTGTAGTGATCCCTGGTGTTGTGGTTAGGGATGAAATTACTGATATAGAAGTGAGAGAGGTGGGTTTGGGAGAAATTGCTGCAAGGTTCCATGGGAAAGATGGCATTAGTAGAATATGGTGTGAATGGTTGGGGGTAAAATCTTTAGACAGTGAGAATTTTTGCAAAGTTACTGAGCATGATTTCGCTGTTGTTACCTTCAGTTATAATATTGATTTGGGTAGAAAGGGTTTACTTGATGATGTAAGGATGTTACTGTCATCCAGCCCTACAATAGAATCAGGGAATGGTGAAGGCACCGGTTGTAAGAGAAAGAAATCCTTTTCTGATCCCGAGGATATCAGTGACTCTCTAAGTAATCAGTATGATTCGTTTGGGGAAGATTCCTCTGCTTCCAGTGGTCCAGCATCTAGGTTGCTTCTAGACCATTATGATGATCAGCTACCGTCACTGAATACAAGATTTATTTTGAACAAATCTATAAGGCGAGAGCTAAGACGGCAACAGCGTTTAGCGTCAGGGAGAATGTGTGATATCTGTCAACAGAGGATGCTTCCTGGGAAAGATGTAGCAACTCTCATGAATGTGAAGACTGGAAGGCTTGCTTGCAGTAGTCGAAATGTGAATGGGGTGAGAGTCCTACACAACTTGCATCCTTTTGCTTTTGACCATGTCCTTTACCAATGTTCTGTAATTCCATCTTTTTTTAATTTCATAATTCCACATTACAGTCTGTCCGTGCATCTGGATTGGCAAGTAGTTCACATCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-met

Protein Analysis

438

Amino Acids

49.21

Weight (kDa)

6.02

Isoelectric Point (pI)

42.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28260 AT4G28260
fragaria_vesca	FvH4_6g26160 FvH4_6g26160 FvH4_6g26160 FvH4_6g26160
malus_domestica	MD09G1249000.v1.1 MD17G1241500.v1.1
prunus_persica	Prupe.3G136400_v2.0.a1 Prupe.3G136400_v2.0.a1
pyrus_communis	pycom03g02040 pycom09g16590
rosa_chinensis	RchiOBHm_Chr2g0126141
rosa_laevigata	RLG00000018889
rosa_multiflora	Rmu_sc0001052.1_g000002
rosa_roxburghii	Rroxscaffold_2G00117400
rosa_rugosa	Rorug02G0261600
rosa_samantha	Rh2AG318500 Rh2BG326800 Rh2DG345000 Rh2DG346200
rosa_wichuraiana	Rw2G025800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	750
AccB1I	GGYRCC	1 cut(s)	839
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	3 cut(s)	24, 547, 866
AcsI	RAATTY	3 cut(s)	344, 517, 700
AcuI	CTGAAG	1 cut(s)	727
AfaI	GTAC	1 cut(s)	151
AfiI	CCNNNNNNNGG	1 cut(s)	31
AgeI	ACCGGT	1 cut(s)	842
AgsI	TTSAA	5 cut(s)	202, 274, 489, 522, 1015
AjnI	CCWGG	3 cut(s)	475, 556, 1099
AluBI	AGCT	3 cut(s)	41, 985, 1036
AluI	AGCT	3 cut(s)	41, 985, 1036
Alw26I	GTCTC	2 cut(s)	302, 366
AlwI	GGATC	3 cut(s)	24, 547, 866
Ama87I	CYCGRG	1 cut(s)	875
AoxI	GGCC	2 cut(s)	22, 266
ApeKI	GCWGC	3 cut(s)	230, 233, 623
ApoI	RAATTY	3 cut(s)	344, 517, 700
AsiGI	ACCGGT	1 cut(s)	842
Asp700I	GAANNNNTTC	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	944
AsuHPI	GGTGA	2 cut(s)	845, 1186
AvaI	CYCGRG	1 cut(s)	875
AvaII	GGWCC	1 cut(s)	944
BaeGI	GKGCMC	1 cut(s)	102
BanI	GGYRCC	1 cut(s)	839
BbsI	GAAGAC	2 cut(s)	41, 1139
BbvI	GCAGC	3 cut(s)	217, 220, 610
BccI	CCATC	5 cut(s)	119, 272, 524, 638, 1249
BceAI	ACGGC	1 cut(s)	1058
BciT130I	CCWGG	3 cut(s)	477, 558, 1101
BclI	TGATCA	3 cut(s)	193, 427, 979
BcoDI	GTCTC	2 cut(s)	302, 366
BfaI	CTAG	2 cut(s)	954, 965
BfmI	CTRYAG	2 cut(s)	172, 546
BisI	GCNGC	3 cut(s)	231, 234, 624
BlsI	GCNGC	3 cut(s)	232, 235, 625
Bme1390I	CCNGG	3 cut(s)	477, 558, 1101
Bme18I	GGWCC	1 cut(s)	944
BmeT110I	CYCGRG	1 cut(s)	875
BmgT120I	GGNCC	1 cut(s)	944
BmiI	GGNNCC	2 cut(s)	632, 841
BmrFI	CCNGG	3 cut(s)	477, 558, 1101
BmsI	GCATC	4 cut(s)	959, 1083, 1204, 1294
BpiI	GAAGAC	2 cut(s)	41, 1139
BpmI	CTGGAG	1 cut(s)	315
Bpu10I	CCTNAGC	1 cut(s)	237
BsaJI	CCNNGG	5 cut(s)	263, 556, 634, 876, 1100
BsaWI	WCCGGW	1 cut(s)	842
BsaXI	ACNNNNNCTCC	2 cut(s)	1057, 1087
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse118I	RCCGGY	1 cut(s)	842
Bse1I	ACTGG	2 cut(s)	939, 1141
Bse3DI	GCAATG	1 cut(s)	88
BseBI	CCWGG	3 cut(s)	477, 558, 1101
BseDI	CCNNGG	5 cut(s)	263, 556, 634, 876, 1100
BseGI	GGATG	5 cut(s)	580, 798, 803, 1098, 1195
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMI	GCAATG	1 cut(s)	88
BseMII	CTCAG	1 cut(s)	708
BseNI	ACTGG	2 cut(s)	939, 1141
BseSI	GKGCMC	1 cut(s)	102
BseXI	GCAGC	3 cut(s)	217, 220, 610
BshFI	GGCC	2 cut(s)	24, 268
BshNI	GGYRCC	1 cut(s)	839
BshTI	ACCGGT	1 cut(s)	842
BsiHKCI	CYCGRG	1 cut(s)	875
BsiSI	CCGG	1 cut(s)	843
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmAI	GTCTC	2 cut(s)	302, 366
BsmI	GAATGC	1 cut(s)	484
BsnI	GGCC	2 cut(s)	24, 268
BsoBI	CYCGRG	1 cut(s)	875
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	6 cut(s)	16, 193, 427, 552, 871, 979
Bsp19I	CCATGG	1 cut(s)	634
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	2 cut(s)	24, 268
BspCNI	CTCAG	1 cut(s)	709
BspHI	TCATGA	2 cut(s)	364, 1122
BspLI	GGNNCC	2 cut(s)	632, 841
BspPI	GGATC	3 cut(s)	24, 547, 866
BspT107I	GGYRCC	1 cut(s)	839
BsrDI	GCAATG	1 cut(s)	88
BsrFI	RCCGGY	1 cut(s)	842
BsrI	ACTGG	2 cut(s)	939, 1141
BssAI	RCCGGY	1 cut(s)	842
BssECI	CCNNGG	5 cut(s)	263, 556, 634, 876, 1100
BssMI	GATC	6 cut(s)	16, 193, 427, 552, 871, 979
BssT1I	CCWWGG	2 cut(s)	263, 634
Bst2UI	CCWGG	3 cut(s)	477, 558, 1101
Bst4CI	ACNGT	4 cut(s)	695, 801, 990, 1274
BstC8I	GCNNGC	4 cut(s)	60, 482, 1146, 1150
BstDEI	CTNAG	4 cut(s)	237, 717, 896, 1037
BstDSI	CCRYGG	1 cut(s)	634
BstENI	CCTNNNNNAGG	1 cut(s)	29
BstF5I	GGATG	5 cut(s)	580, 798, 803, 1098, 1195
BstKTI	GATC	6 cut(s)	19, 196, 430, 555, 874, 982
BstMAI	GTCTC	2 cut(s)	302, 366
BstMBI	GATC	6 cut(s)	16, 193, 427, 552, 871, 979
BstMWI	GCNNNNNNNGC	3 cut(s)	481, 533, 1042
BstNI	CCWGG	3 cut(s)	477, 558, 1101
BstSCI	CCNGG	3 cut(s)	475, 556, 1099
BstSFI	CTRYAG	2 cut(s)	172, 546
BstSLI	GKGCMC	1 cut(s)	102
BstV1I	GCAGC	3 cut(s)	217, 220, 610
BstV2I	GAAGAC	2 cut(s)	41, 1139
BstX2I	RGATCY	1 cut(s)	16
BstXI	CCANNNNNNTGG	1 cut(s)	264
BstYI	RGATCY	1 cut(s)	16
BsuRI	GGCC	2 cut(s)	24, 268
BtgI	CCRYGG	1 cut(s)	634
BtsCI	GGATG	5 cut(s)	580, 798, 803, 1098, 1195
BtsIMutI	CAGTG	4 cut(s)	700, 892, 946, 992
Cac8I	GCNNGC	4 cut(s)	60, 482, 1146, 1150
CciI	TCATGA	2 cut(s)	364, 1122
Cfr10I	RCCGGY	1 cut(s)	842
Cfr13I	GGNCC	1 cut(s)	944
CseI	GACGC	1 cut(s)	1047
Csp6I	GTAC	1 cut(s)	150
CspAI	ACCGGT	1 cut(s)	842
CviAII	CATG	5 cut(s)	365, 635, 722, 1123, 1214
CviQI	GTAC	1 cut(s)	150
DdeI	CTNAG	4 cut(s)	237, 717, 896, 1037
DpnI	GATC	6 cut(s)	18, 195, 429, 554, 873, 981
DpnII	GATC	6 cut(s)	16, 193, 427, 552, 871, 979
Eco130I	CCWWGG	2 cut(s)	263, 634
Eco32I	GATATC	2 cut(s)	883, 1078
Eco47I	GGWCC	1 cut(s)	944
Eco57I	CTGAAG	1 cut(s)	727
Eco88I	CYCGRG	1 cut(s)	875
EcoNI	CCTNNNNNAGG	1 cut(s)	29
EcoRI	GAATTC	1 cut(s)	517
EcoRII	CCWGG	3 cut(s)	475, 556, 1099
EcoRV	GATATC	2 cut(s)	883, 1078
EcoT14I	CCWWGG	2 cut(s)	263, 634
ErhI	CCWWGG	2 cut(s)	263, 634
FaeI	CATG	5 cut(s)	368, 638, 725, 1126, 1217
FalI	AAGNNNNNCTT	4 cut(s)	848, 880, 1132, 1164
FatI	CATG	5 cut(s)	364, 634, 721, 1122, 1213
FauNDI	CATATG	2 cut(s)	106, 304
FbaI	TGATCA	3 cut(s)	193, 427, 979
Fnu4HI	GCNGC	3 cut(s)	231, 234, 624
FokI	GGATG	5 cut(s)	587, 790, 805, 1105, 1182
Fsp4HI	GCNGC	3 cut(s)	231, 234, 624
FspBI	CTAG	2 cut(s)	954, 965
GluI	GCNGC	3 cut(s)	231, 234, 624
GsuI	CTGGAG	1 cut(s)	315
HaeIII	GGCC	2 cut(s)	24, 268
HapII	CCGG	1 cut(s)	843
HgaI	GACGC	1 cut(s)	1047
Hin1II	CATG	5 cut(s)	368, 638, 725, 1126, 1217
HincII	GTYRAC	1 cut(s)	1085
HindII	GTYRAC	1 cut(s)	1085
HindIII	AAGCTT	1 cut(s)	39
HinfI	GANTC	8 cut(s)	328, 359, 470, 821, 890, 911, 926, 1179
HpaII	CCGG	1 cut(s)	843
HphI	GGTGA	2 cut(s)	845, 1186
Hpy166II	GTNNAC	3 cut(s)	776, 1085, 1306
Hpy188I	TCNGA	2 cut(s)	411, 871
Hpy188III	TCNNGA	7 cut(s)	53, 332, 365, 875, 965, 1123, 1289
Hpy8I	GTNNAC	3 cut(s)	776, 1085, 1306
HpyAV	CCTTC	6 cut(s)	3, 35, 196, 751, 830, 1134
HpyCH4III	ACNGT	4 cut(s)	695, 801, 990, 1274
HpyCH4V	TGCA	7 cut(s)	164, 484, 626, 708, 1152, 1195, 1285
HpyF10VI	GCNNNNNNNGC	3 cut(s)	481, 533, 1042
HpyF3I	CTNAG	4 cut(s)	237, 717, 896, 1037
Hsp92II	CATG	5 cut(s)	368, 638, 725, 1126, 1217
Ksp22I	TGATCA	3 cut(s)	193, 427, 979
Kzo9I	GATC	6 cut(s)	16, 193, 427, 552, 871, 979
LmnI	GCTCC	1 cut(s)	533
Lsp1109I	GCAGC	3 cut(s)	217, 220, 610
LweI	GCATC	4 cut(s)	959, 1083, 1204, 1294
MaeI	CTAG	2 cut(s)	954, 965
MaeIII	GTNAC	8 cut(s)	90, 241, 325, 712, 736, 795, 887, 990
MalI	GATC	6 cut(s)	18, 195, 429, 554, 873, 981
MboI	GATC	6 cut(s)	16, 193, 427, 552, 871, 979
MboII	GAAGA	8 cut(s)	41, 68, 134, 136, 142, 203, 935, 1144
MflI	RGATCY	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	102
MlyI	GAGTC	4 cut(s)	322, 368, 884, 1188
MmeI	TCCRAC	2 cut(s)	336, 475
MnlI	CCTC	7 cut(s)	81, 106, 553, 595, 871, 940, 1083
MroXI	GAANNNNTTC	1 cut(s)	134
MseI	TTAA	3 cut(s)	501, 1251, 1315
MslI	CAYNNNNRTG	6 cut(s)	105, 369, 435, 489, 975, 1127
MspI	CCGG	1 cut(s)	843
MspR9I	CCNGG	3 cut(s)	477, 558, 1101
Mva1269I	GAATGC	1 cut(s)	484
MvaI	CCWGG	3 cut(s)	477, 558, 1101
MwoI	GCNNNNNNNGC	3 cut(s)	481, 533, 1042
NcoI	CCATGG	1 cut(s)	634
NdeI	CATATG	2 cut(s)	106, 304
NdeII	GATC	6 cut(s)	16, 193, 427, 552, 871, 979
NlaIII	CATG	5 cut(s)	368, 638, 725, 1126, 1217
NlaIV	GGNNCC	2 cut(s)	632, 841
NmuCI	GTSAC	4 cut(s)	90, 325, 887, 990
PagI	TCATGA	2 cut(s)	364, 1122
PcsI	WCGNNNNNNNCGW	1 cut(s)	1048
PctI	GAATGC	1 cut(s)	484
PdmI	GAANNNNTTC	1 cut(s)	134
PfeI	GAWTC	4 cut(s)	470, 821, 911, 926
PflFI	GACNNNGTC	1 cut(s)	1214
PinAI	ACCGGT	1 cut(s)	842
PkrI	GCNGC	3 cut(s)	232, 235, 625
PleI	GAGTC	4 cut(s)	322, 367, 884, 1187
PpsI	GAGTC	4 cut(s)	322, 367, 884, 1187
PsiI	TTATAA	1 cut(s)	750
Psp6I	CCWGG	3 cut(s)	475, 556, 1099
PspGI	CCWGG	3 cut(s)	475, 556, 1099
PspN4I	GGNNCC	2 cut(s)	632, 841
PspPI	GGNCC	1 cut(s)	944
PsuI	RGATCY	1 cut(s)	16
PsyI	GACNNNGTC	1 cut(s)	1214
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
RseI	CAYNNNNRTG	6 cut(s)	105, 369, 435, 489, 975, 1127
SaqAI	TTAA	3 cut(s)	501, 1251, 1315
SatI	GCNGC	3 cut(s)	231, 234, 624
Sau3AI	GATC	6 cut(s)	16, 193, 427, 552, 871, 979
Sau96I	GGNCC	1 cut(s)	944
SchI	GAGTC	4 cut(s)	322, 368, 884, 1188
ScrFI	CCNGG	3 cut(s)	477, 558, 1101
SduI	GDGCHC	1 cut(s)	102
SfaNI	GCATC	4 cut(s)	959, 1083, 1204, 1294
SfcI	CTRYAG	2 cut(s)	172, 546
SinI	GGWCC	1 cut(s)	944
SmiMI	CAYNNNNRTG	6 cut(s)	105, 369, 435, 489, 975, 1127
SsiI	CCGC	1 cut(s)	5
SspI	AATATT	1 cut(s)	754
SspMI	CTAG	2 cut(s)	954, 965
StyD4I	CCNGG	3 cut(s)	475, 556, 1099
StyI	CCWWGG	2 cut(s)	263, 634
TaaI	ACNGT	4 cut(s)	695, 801, 990, 1274
TaqI	TCGA	2 cut(s)	52, 1159
TatI	WGTACW	1 cut(s)	149
TfiI	GAWTC	4 cut(s)	470, 821, 911, 926
Tru1I	TTAA	3 cut(s)	501, 1251, 1315
Tru9I	TTAA	3 cut(s)	501, 1251, 1315
TscAI	CASTG	4 cut(s)	700, 892, 946, 999
TseFI	GTSAC	4 cut(s)	90, 325, 887, 990
TseI	GCWGC	3 cut(s)	230, 233, 623
Tsp45I	GTSAC	4 cut(s)	90, 325, 887, 990
TspDTI	ATGAA	6 cut(s)	127, 203, 291, 591, 1139, 1246
TspGWI	ACGGA	1 cut(s)	1270
TspRI	CASTG	4 cut(s)	700, 892, 946, 999
Tth111I	GACNNNGTC	1 cut(s)	1214
VpaK11BI	GGWCC	1 cut(s)	944
XagI	CCTNNNNNAGG	1 cut(s)	29
XapI	RAATTY	3 cut(s)	344, 517, 700
XbaI	TCTAGA	1 cut(s)	964
XcmI	CCANNNNNNNNNTGG	1 cut(s)	641
XmnI	GAANNNNTTC	1 cut(s)	134
XspI	CTAG	2 cut(s)	954, 965

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.