AT4G29070

Phospholipase A2 family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
14321807 .. 14323336
1530 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G29070.2

Sequence Viewer

Length: 780 bp
ATGAATTTTGGGTTGCCAAGTATATCTTGGTTTGGTAGCATCAGCACAAAGAAAGATGTAGCTATGATTGATTCCGTGACACCAACAACAACTTCTCTATTGGAACAGCCAGAGCAAGAGAAAGCAACAACCTTTCTTCTCAAACAGCCAGAGAAAGAGAAAGGCTTATTTGATATAAAGATATGGACTTGGTCCTCCTTCAGTTCAGTTCTTCCTTGGTCTGCAAATGCCTCTGATGGTAAGCAGAAACCCACTACTATCAACAGAGGGTTAAAAAGGCATGCTCTTTCTCGGAGGTCATCAAGATCAAATGGTGTGAATACTGTTTATCGGTTTAGACCTTATGTGTCTAAGGTTCCGTGGCATACAGGGACGAGGGCGTTTCTGTCACAGCTTTTCCCGAGATATGGACATTATTGTGGACCTAACTGGTCTAGTGGGAAAGATGGAGGTTCGATGGTTTGGGATCAGAGACCTATTGATTGGTTAGATCATTGCTGTTATTGCCATGATATTGGTTATGATACTCATGACCAGGCAGAGTTGCTTAAAGCTGACATGGCGTTTCTTGAGTGTTTGGAATCAAACAAGCGTGTAGTTACTAGGGGAGATGCTCAAGTTGCTCACTTTTACAAAACAATGTGCATTACAGGTCTCAAGAGCATACTAATACCCTACAGAAGTTACCTTGTGAAGATACAATACGGGCAAAATCTACTCGACTTTGGCTGGATAGTGAGCAACCTCAGCAAGAGAAGCTGGAGTTTTCAGAAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

259

Amino Acids

29.65

Weight (kDa)

9.39

Isoelectric Point (pI)

39.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29070 AT4G29070
fragaria_vesca FvH4_3g27811
malus_domestica MD03G1165500.v1.1
prunus_persica Prupe.4G265500_v2.0.a1
pyrus_communis pycom03g12010
rosa_chinensis RchiOBHm_Chr5g0050481
rosa_laevigata RLG00000034704
rosa_multiflora Rmu_sc0000459.1_g000004 Rmu_sc0003202.1_g000007
rosa_roxburghii Rroxscaffold_1G00030410
rosa_rugosa Rorug05G0261300
rosa_samantha Rh5AG333000 Rh5BG343100 Rh5CG370400 Rh5DG355700
rosa_wichuraiana Rw5G031460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 474
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 1 cut(s) 184
AfiI CCNNNNNNNGG 1 cut(s) 407
AjnI CCWGG 1 cut(s) 534
AjuI GAANNNNNNNTTGG 2 cut(s) 76, 108
AluBI AGCT 4 cut(s) 62, 394, 554, 759
AluI AGCT 4 cut(s) 62, 394, 554, 759
Alw26I GTCTC 2 cut(s) 466, 659
AlwI GGATC 1 cut(s) 474
Ama87I CYCGRG 1 cut(s) 400
ApoI RAATTY 1 cut(s) 4
AspS9I GGNCC 2 cut(s) 192, 422
AvaI CYCGRG 1 cut(s) 400
AvaII GGWCC 2 cut(s) 192, 422
BarI GAAGNNNNNNTAC 2 cut(s) 686, 718
BbvCI CCTCAGC 1 cut(s) 746
BccI CCATC 3 cut(s) 230, 440, 451
BciT130I CCWGG 1 cut(s) 536
BcoDI GTCTC 2 cut(s) 466, 659
BfaI CTAG 2 cut(s) 435, 603
BfmI CTRYAG 1 cut(s) 676
Bme1390I CCNGG 1 cut(s) 536
Bme18I GGWCC 2 cut(s) 192, 422
BmeT110I CYCGRG 1 cut(s) 400
BmgT120I GGNCC 2 cut(s) 192, 422
BmiI GGNNCC 1 cut(s) 357
BmrFI CCNGG 1 cut(s) 536
BmsI GCATC 2 cut(s) 48, 601
Bpu10I CCTNAGC 1 cut(s) 746
BpuEI CTTGAG 3 cut(s) 590, 600, 641
BsaI GGTCTC 2 cut(s) 466, 659
BsaJI CCNNGG 2 cut(s) 215, 359
Bsc4I CCNNNNNNNGG 1 cut(s) 407
Bse1I ACTGG 1 cut(s) 434
Bse3DI GCAATG 1 cut(s) 493
BseBI CCWGG 1 cut(s) 536
BseDI CCNNGG 2 cut(s) 215, 359
BseLI CCNNNNNNNGG 1 cut(s) 407
BseMI GCAATG 1 cut(s) 493
BseMII CTCAG 1 cut(s) 760
BseNI ACTGG 1 cut(s) 434
BsiHKCI CYCGRG 1 cut(s) 400
BslFI GGGAC 1 cut(s) 385
BslI CCNNNNNNNGG 1 cut(s) 407
BsmAI GTCTC 2 cut(s) 466, 659
BsmFI GGGAC 1 cut(s) 385
Bso31I GGTCTC 2 cut(s) 466, 659
BsoBI CYCGRG 1 cut(s) 400
Bsp143I GATC 3 cut(s) 305, 466, 490
BspCNI CTCAG 1 cut(s) 759
BspHI TCATGA 1 cut(s) 529
BspLI GGNNCC 1 cut(s) 357
BspPI GGATC 1 cut(s) 474
BspTNI GGTCTC 2 cut(s) 466, 659
BsrDI GCAATG 1 cut(s) 493
BsrI ACTGG 1 cut(s) 434
BssECI CCNNGG 2 cut(s) 215, 359
BssMI GATC 3 cut(s) 305, 466, 490
BssT1I CCWWGG 1 cut(s) 215
Bst2UI CCWGG 1 cut(s) 536
Bst4CI ACNGT 1 cut(s) 325
BstC8I GCNNGC 1 cut(s) 282
BstDEI CTNAG 2 cut(s) 351, 746
BstDSI CCRYGG 1 cut(s) 359
BstKTI GATC 3 cut(s) 308, 469, 493
BstMAI GTCTC 2 cut(s) 466, 659
BstMBI GATC 3 cut(s) 305, 466, 490
BstMWI GCNNNNNNNGC 5 cut(s) 504, 560, 620, 747, 756
BstNI CCWGG 1 cut(s) 536
BstNSI RCATGY 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 534
BstSFI CTRYAG 1 cut(s) 676
BstXI CCANNNNNNTGG 1 cut(s) 515
BtgI CCRYGG 1 cut(s) 359
Cac8I GCNNGC 1 cut(s) 282
CciI TCATGA 1 cut(s) 529
Cfr13I GGNCC 2 cut(s) 192, 422
CviAII CATG 4 cut(s) 281, 509, 530, 559
CviJI RGCY 8 cut(s) 62, 109, 148, 165, 394, 554, 729, 759
CviKI_1 RGCY 8 cut(s) 62, 109, 148, 165, 394, 554, 729, 759
DdeI CTNAG 2 cut(s) 351, 746
DpnI GATC 3 cut(s) 307, 468, 492
DpnII GATC 3 cut(s) 305, 466, 490
Eco130I CCWWGG 1 cut(s) 215
Eco31I GGTCTC 2 cut(s) 466, 659
Eco47I GGWCC 2 cut(s) 192, 422
Eco57I CTGAAG 1 cut(s) 184
Eco88I CYCGRG 1 cut(s) 400
EcoRII CCWGG 1 cut(s) 534
EcoT14I CCWWGG 1 cut(s) 215
ErhI CCWWGG 1 cut(s) 215
FaeI CATG 4 cut(s) 284, 512, 533, 562
FalI AAGNNNNNCTT 2 cut(s) 10, 42
FaqI GGGAC 1 cut(s) 385
FatI CATG 4 cut(s) 280, 508, 529, 558
FspBI CTAG 2 cut(s) 435, 603
Hin1II CATG 4 cut(s) 284, 512, 533, 562
HinfI GANTC 2 cut(s) 71, 581
Hpy166II GTNNAC 1 cut(s) 422
Hpy188I TCNGA 4 cut(s) 235, 294, 471, 771
Hpy188III TCNNGA 5 cut(s) 303, 400, 530, 569, 658
Hpy8I GTNNAC 1 cut(s) 422
HpyAV CCTTC 1 cut(s) 208
HpyCH4III ACNGT 1 cut(s) 325
HpyCH4V TGCA 2 cut(s) 224, 645
HpyF10VI GCNNNNNNNGC 5 cut(s) 504, 560, 620, 747, 756
HpyF3I CTNAG 2 cut(s) 351, 746
Hsp92II CATG 4 cut(s) 284, 512, 533, 562
Kzo9I GATC 3 cut(s) 305, 466, 490
LpnPI CCDG 9 cut(s) 123, 162, 354, 415, 521, 548, 636, 715, 745
LweI GCATC 2 cut(s) 48, 601
MaeI CTAG 2 cut(s) 435, 603
MaeIII GTNAC 4 cut(s) 76, 387, 598, 683
MalI GATC 3 cut(s) 307, 468, 492
MboI GATC 3 cut(s) 305, 466, 490
MboII GAAGA 3 cut(s) 128, 203, 706
MluCI AATT 1 cut(s) 4
MnlI CCTC 7 cut(s) 205, 241, 260, 288, 369, 443, 755
MseI TTAA 2 cut(s) 272, 549
MslI CAYNNNNRTG 1 cut(s) 417
MspR9I CCNGG 1 cut(s) 536
MvaI CCWGG 1 cut(s) 536
MwoI GCNNNNNNNGC 5 cut(s) 504, 560, 620, 747, 756
NdeII GATC 3 cut(s) 305, 466, 490
NlaIII CATG 4 cut(s) 284, 512, 533, 562
NlaIV GGNNCC 1 cut(s) 357
NmuCI GTSAC 2 cut(s) 76, 387
NspI RCATGY 1 cut(s) 284
PaeI GCATGC 1 cut(s) 284
PagI TCATGA 1 cut(s) 529
PfeI GAWTC 2 cut(s) 71, 581
PflFI GACNNNGTC 1 cut(s) 190
Psp6I CCWGG 1 cut(s) 534
PspGI CCWGG 1 cut(s) 534
PspN4I GGNNCC 1 cut(s) 357
PspPI GGNCC 2 cut(s) 192, 422
PsyI GACNNNGTC 1 cut(s) 190
RseI CAYNNNNRTG 1 cut(s) 417
SaqAI TTAA 2 cut(s) 272, 549
Sau3AI GATC 3 cut(s) 305, 466, 490
Sau96I GGNCC 2 cut(s) 192, 422
ScrFI CCNGG 1 cut(s) 536
SfaNI GCATC 2 cut(s) 48, 601
SfcI CTRYAG 1 cut(s) 676
SinI GGWCC 2 cut(s) 192, 422
SmiMI CAYNNNNRTG 1 cut(s) 417
SmlI CTYRAG 3 cut(s) 569, 615, 656
SmoI CTYRAG 3 cut(s) 569, 615, 656
SphI GCATGC 1 cut(s) 284
Sse9I AATT 1 cut(s) 4
SspMI CTAG 2 cut(s) 435, 603
StyD4I CCNGG 1 cut(s) 534
StyI CCWWGG 1 cut(s) 215
TaaI ACNGT 1 cut(s) 325
TaqI TCGA 2 cut(s) 455, 720
TasI AATT 1 cut(s) 4
TfiI GAWTC 2 cut(s) 71, 581
Tru1I TTAA 2 cut(s) 272, 549
Tru9I TTAA 2 cut(s) 272, 549
TseFI GTSAC 2 cut(s) 76, 387
Tsp45I GTSAC 2 cut(s) 76, 387
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 64, 348
Tth111I GACNNNGTC 1 cut(s) 190
VpaK11BI GGWCC 2 cut(s) 192, 422
XapI RAATTY 1 cut(s) 4
XceI RCATGY 1 cut(s) 284
XcmI CCANNNNNNNNNTGG 1 cut(s) 24
XspI CTAG 2 cut(s) 435, 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.