Rorug05G0261300

Phospholipase A2 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0014189
Physical Location & Seq
Reverse (-)
29531639 .. 29533621
1983 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0261300.1

Sequence Viewer

Length: 612 bp
ATGGAACCACAAACCCAGCAACCAACGGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGCAGTGCTAACATGCATTGCAGGCGGAGCAGTACCAAGTGGGCTCCTACTACAGATCAGATAAGAATCCTCAAGGAGTTTTATGACAATGGAGTTAAGAACCCAACTCCAGAGCAGGTTCAGGGGATTTGTCTCCAGCTGAAACAGTACGGACAGGTCGAGAACAAGAACGTCTATTATTGGTTCCAGAACCACAAGTCTCGGGAGAGGCAGAAGAAGAAGTTAACTTCCGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGGATCCATTAATCTCAATTTTGGGTCAACTAGTTCTACTGGTGTTGATGGATCCATTAATCTCAATTTTGGATCAACTTGTTCTGCTGGTGTTGGTGGATCCATCATGGAACAACGAGGAGAAGATCACCAGGAGATTGAAACCCTTCCACTGTTCCCCATGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGAGGGAGGTAGCGGTTATGGCGGTGGCTCTCGCATTTCCCTTGAGCTCAGTCTCAACTCCTCCGGAGCTGCTGACATGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

21.95

Weight (kDa)

6.21

Isoelectric Point (pI)

49.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 31 - 90 1.1e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29070 AT4G29070
fragaria_vesca FvH4_3g27811
malus_domestica MD03G1165500.v1.1
prunus_persica Prupe.4G265500_v2.0.a1
pyrus_communis pycom03g12010
rosa_chinensis RchiOBHm_Chr5g0050481
rosa_laevigata RLG00000034704
rosa_multiflora Rmu_sc0000459.1_g000004 Rmu_sc0003202.1_g000007
rosa_roxburghii Rroxscaffold_1G00030410
rosa_rugosa Rorug05G0261300
rosa_samantha Rh5AG333000 Rh5BG343100 Rh5CG370400 Rh5DG355700
rosa_wichuraiana Rw5G031460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 163
AccIII TCCGGA 1 cut(s) 590
AciI CCGC 3 cut(s) 82, 540, 549
AclWI GGATC 7 cut(s) 324, 337, 372, 385, 406, 420, 433
AfaI GTAC 2 cut(s) 91, 206
AfiI CCNNNNNNNGG 1 cut(s) 491
AgsI TTSAA 1 cut(s) 467
AhlI ACTAGT 1 cut(s) 356
AjnI CCWGG 1 cut(s) 456
AluBI AGCT 3 cut(s) 196, 574, 596
AluI AGCT 3 cut(s) 196, 574, 596
Alw21I GWGCWC 1 cut(s) 576
Alw26I GTCTC 3 cut(s) 194, 261, 584
AlwI GGATC 7 cut(s) 324, 337, 372, 385, 406, 420, 433
Ama87I CYCGRG 1 cut(s) 258
Aor13HI TCCGGA 1 cut(s) 590
ApeKI GCWGC 2 cut(s) 50, 596
AseI ATTAAT 2 cut(s) 336, 384
Asp700I GAANNNNTTC 1 cut(s) 471
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 446, 506
AvaI CYCGRG 1 cut(s) 258
BaeGI GKGCMC 1 cut(s) 303
BamHI GGATCC 3 cut(s) 329, 377, 425
BanII GRGCYC 2 cut(s) 103, 576
BbsI GAAGAC 1 cut(s) 524
Bbv12I GWGCWC 1 cut(s) 576
BbvI GCAGC 2 cut(s) 62, 583
BccI CCATC 3 cut(s) 26, 368, 437
BciT130I CCWGG 1 cut(s) 458
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 3 cut(s) 194, 261, 584
BcuI ACTAGT 1 cut(s) 356
BfaI CTAG 1 cut(s) 357
BfmI CTRYAG 1 cut(s) 108
BfuAI ACCTGC 1 cut(s) 163
BisI GCNGC 2 cut(s) 51, 597
BlsI GCNGC 2 cut(s) 52, 598
Bme1390I CCNGG 2 cut(s) 55, 458
BmeT110I CYCGRG 1 cut(s) 258
BmiI GGNNCC 6 cut(s) 6, 102, 242, 331, 379, 427
BmrFI CCNGG 2 cut(s) 55, 458
BpiI GAAGAC 1 cut(s) 524
BpmI CTGGAG 2 cut(s) 150, 176
BpuEI CTTGAG 2 cut(s) 113, 590
BpuMI CCSGG 1 cut(s) 55
BsaBI GATNNNNATC 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 528
BsaWI WCCGGW 1 cut(s) 590
Bsc4I CCNNNNNNNGG 1 cut(s) 491
Bse1I ACTGG 1 cut(s) 370
Bse3DI GCAATG 1 cut(s) 73
Bse8I GATNNNNATC 1 cut(s) 122
BseAI TCCGGA 1 cut(s) 590
BseBI CCWGG 1 cut(s) 458
BseDI CCNNGG 1 cut(s) 528
BseGI GGATG 1 cut(s) 37
BseJI GATNNNNATC 1 cut(s) 122
BseLI CCNNNNNNNGG 1 cut(s) 491
BseMI GCAATG 1 cut(s) 73
BseMII CTCAG 1 cut(s) 589
BseNI ACTGG 1 cut(s) 370
BseRI GAGGAG 2 cut(s) 459, 577
BseSI GKGCMC 1 cut(s) 303
BseXI GCAGC 2 cut(s) 62, 583
BseYI CCCAGC 1 cut(s) 15
BsiHKAI GWGCWC 1 cut(s) 576
BsiHKCI CYCGRG 1 cut(s) 258
BsiSI CCGG 2 cut(s) 54, 591
BslI CCNNNNNNNGG 1 cut(s) 491
BsmAI GTCTC 3 cut(s) 194, 261, 584
BsoBI CYCGRG 1 cut(s) 258
Bsp1286I GDGCHC 3 cut(s) 103, 303, 576
Bsp13I TCCGGA 1 cut(s) 590
Bsp143I GATC 7 cut(s) 112, 311, 329, 377, 398, 425, 451
BspACI CCGC 3 cut(s) 82, 540, 549
BspCNI CTCAG 1 cut(s) 588
BspEI TCCGGA 1 cut(s) 590
BspLI GGNNCC 6 cut(s) 6, 102, 242, 331, 379, 427
BspMI ACCTGC 1 cut(s) 163
BspPI GGATC 7 cut(s) 324, 337, 372, 385, 406, 420, 433
BsrDI GCAATG 1 cut(s) 73
BsrI ACTGG 1 cut(s) 370
BssECI CCNNGG 1 cut(s) 528
BssMI GATC 7 cut(s) 112, 311, 329, 377, 398, 425, 451
Bst2UI CCWGG 1 cut(s) 458
Bst4CI ACNGT 2 cut(s) 204, 480
BstC8I GCNNGC 1 cut(s) 80
BstDEI CTNAG 2 cut(s) 575, 609
BstF5I GGATG 1 cut(s) 37
BstKTI GATC 7 cut(s) 115, 314, 332, 380, 401, 428, 454
BstMAI GTCTC 3 cut(s) 194, 261, 584
BstMBI GATC 7 cut(s) 112, 311, 329, 377, 398, 425, 451
BstMWI GCNNNNNNNGC 4 cut(s) 79, 84, 546, 605
BstNI CCWGG 1 cut(s) 458
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 2 cut(s) 53, 456
BstSFI CTRYAG 1 cut(s) 108
BstSLI GKGCMC 1 cut(s) 303
BstV1I GCAGC 2 cut(s) 62, 583
BstV2I GAAGAC 1 cut(s) 524
BstX2I RGATCY 3 cut(s) 329, 377, 425
BstYI RGATCY 3 cut(s) 329, 377, 425
BtsCI GGATG 1 cut(s) 37
BtsI GCAGTG 1 cut(s) 67
BtsIMutI CAGTG 2 cut(s) 67, 476
BveI ACCTGC 1 cut(s) 163
Cac8I GCNNGC 1 cut(s) 80
Csp6I GTAC 2 cut(s) 90, 205
CviAII CATG 8 cut(s) 70, 296, 304, 433, 487, 491, 514, 604
CviJI RGCY 8 cut(s) 53, 101, 196, 319, 555, 574, 596, 608
CviKI_1 RGCY 8 cut(s) 53, 101, 196, 319, 555, 574, 596, 608
CviQI GTAC 2 cut(s) 90, 205
DdeI CTNAG 2 cut(s) 575, 609
DpnI GATC 7 cut(s) 114, 313, 331, 379, 400, 427, 453
DpnII GATC 7 cut(s) 112, 311, 329, 377, 398, 425, 451
EciI GGCGGA 1 cut(s) 97
Ecl136II GAGCTC 1 cut(s) 574
Eco24I GRGCYC 2 cut(s) 103, 576
Eco53kI GAGCTC 1 cut(s) 574
Eco88I CYCGRG 1 cut(s) 258
EcoICRI GAGCTC 1 cut(s) 574
EcoRII CCWGG 1 cut(s) 456
EcoT22I ATGCAT 2 cut(s) 75, 492
EcoT38I GRGCYC 2 cut(s) 103, 576
FaeI CATG 8 cut(s) 73, 299, 307, 436, 490, 494, 517, 607
FatI CATG 8 cut(s) 69, 295, 303, 432, 486, 490, 513, 603
Fnu4HI GCNGC 2 cut(s) 51, 597
FokI GGATG 1 cut(s) 44
FriOI GRGCYC 2 cut(s) 103, 576
Fsp4HI GCNGC 2 cut(s) 51, 597
FspBI CTAG 1 cut(s) 357
GluI GCNGC 2 cut(s) 51, 597
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 2 cut(s) 150, 176
HapII CCGG 2 cut(s) 54, 591
Hin1II CATG 8 cut(s) 73, 299, 307, 436, 490, 494, 517, 607
HincII GTYRAC 2 cut(s) 282, 354
HindII GTYRAC 2 cut(s) 282, 354
HinfI GANTC 1 cut(s) 123
HpaI GTTAAC 1 cut(s) 282
HpaII CCGG 2 cut(s) 54, 591
HphI GGTGA 2 cut(s) 446, 506
Hpy166II GTNNAC 2 cut(s) 282, 354
Hpy188I TCNGA 3 cut(s) 117, 289, 529
Hpy188III TCNNGA 5 cut(s) 167, 217, 244, 260, 591
Hpy8I GTNNAC 2 cut(s) 282, 354
HpyAV CCTTC 1 cut(s) 482
HpyCH4III ACNGT 2 cut(s) 204, 480
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 4 cut(s) 73, 78, 307, 490
HpyF10VI GCNNNNNNNGC 4 cut(s) 79, 84, 546, 605
HpyF3I CTNAG 2 cut(s) 575, 609
HpySE526I ACGT 1 cut(s) 228
Hsp92II CATG 8 cut(s) 73, 299, 307, 436, 490, 494, 517, 607
Kpn2I TCCGGA 1 cut(s) 590
KspAI GTTAAC 1 cut(s) 282
Kzo9I GATC 7 cut(s) 112, 311, 329, 377, 398, 425, 451
LmnI GCTCC 4 cut(s) 57, 84, 106, 593
Lsp1109I GCAGC 2 cut(s) 62, 583
MaeI CTAG 1 cut(s) 357
MaeII ACGT 1 cut(s) 228
MalI GATC 7 cut(s) 114, 313, 331, 379, 400, 427, 453
MboI GATC 7 cut(s) 112, 311, 329, 377, 398, 425, 451
MboII GAAGA 4 cut(s) 283, 286, 461, 529
MflI RGATCY 3 cut(s) 329, 377, 425
MhlI GDGCHC 3 cut(s) 103, 303, 576
MluCI AATT 2 cut(s) 343, 391
MnlI CCTC 9 cut(s) 22, 29, 137, 258, 437, 490, 523, 527, 598
Mph1103I ATGCAT 2 cut(s) 75, 492
MroI TCCGGA 1 cut(s) 590
MroXI GAANNNNTTC 1 cut(s) 471
MseI TTAA 4 cut(s) 153, 281, 336, 384
MspA1I CMGCKG 1 cut(s) 196
MspI CCGG 2 cut(s) 54, 591
MspR9I CCNGG 2 cut(s) 55, 458
MvaI CCWGG 1 cut(s) 458
MwoI GCNNNNNNNGC 4 cut(s) 79, 84, 546, 605
NciI CCSGG 1 cut(s) 55
NdeII GATC 7 cut(s) 112, 311, 329, 377, 398, 425, 451
NlaIII CATG 8 cut(s) 73, 299, 307, 436, 490, 494, 517, 607
NlaIV GGNNCC 6 cut(s) 6, 102, 242, 331, 379, 427
NsiI ATGCAT 2 cut(s) 75, 492
NspI RCATGY 1 cut(s) 73
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PdmI GAANNNNTTC 1 cut(s) 471
PfeI GAWTC 1 cut(s) 123
PkrI GCNGC 2 cut(s) 52, 598
PshBI ATTAAT 2 cut(s) 336, 384
Psp124BI GAGCTC 1 cut(s) 576
Psp6I CCWGG 1 cut(s) 456
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 1 cut(s) 456
PspN4I GGNNCC 6 cut(s) 6, 102, 242, 331, 379, 427
PsuI RGATCY 3 cut(s) 329, 377, 425
PvuII CAGCTG 1 cut(s) 196
RsaI GTAC 2 cut(s) 91, 206
RsaNI GTAC 2 cut(s) 90, 205
SacI GAGCTC 1 cut(s) 576
SaqAI TTAA 4 cut(s) 153, 281, 336, 384
SatI GCNGC 2 cut(s) 51, 597
Sau3AI GATC 7 cut(s) 112, 311, 329, 377, 398, 425, 451
ScrFI CCNGG 2 cut(s) 55, 458
SduI GDGCHC 3 cut(s) 103, 303, 576
SetI ASST 7 cut(s) 177, 198, 216, 231, 538, 576, 598
SfcI CTRYAG 1 cut(s) 108
SmlI CTYRAG 2 cut(s) 128, 569
SmoI CTYRAG 2 cut(s) 128, 569
SpeI ACTAGT 1 cut(s) 356
Sse9I AATT 2 cut(s) 343, 391
SsiI CCGC 3 cut(s) 82, 540, 549
SspMI CTAG 1 cut(s) 357
SstI GAGCTC 1 cut(s) 576
StyD4I CCNGG 2 cut(s) 53, 456
TaaI ACNGT 2 cut(s) 204, 480
TaiI ACGT 1 cut(s) 231
TaqI TCGA 1 cut(s) 216
TasI AATT 2 cut(s) 343, 391
TfiI GAWTC 1 cut(s) 123
Tru1I TTAA 4 cut(s) 153, 281, 336, 384
Tru9I TTAA 4 cut(s) 153, 281, 336, 384
TscAI CASTG 2 cut(s) 67, 483
TseI GCWGC 2 cut(s) 50, 596
TspDTI ATGAA 2 cut(s) 284, 530
TspGWI ACGGA 2 cut(s) 41, 222
TspRI CASTG 2 cut(s) 67, 483
VspI ATTAAT 2 cut(s) 336, 384
XceI RCATGY 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 471
XspI CTAG 1 cut(s) 357
Zsp2I ATGCAT 2 cut(s) 75, 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.