pycom03g12010

Phospholipase A2 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0014189
Physical Location & Seq
Forward (+)
12344875 .. 12345739
865 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g12010.2

Sequence Viewer

Length: 735 bp
ATGAACCTGGGTTTTCTTGGTAATCTCCCTTGGTTTAGGGCCCAGTCAAACAGCGATTTGGAATTGGAATTGGAACCAACTCTTAATCCAACAACTACCCTTTTCGAGCAACCTAACCAAAAGGGTGGTTTTGATGTCAAGTTGTTGGGATTGTCCCTTCTTTCCTTTGTTCCATGGGTGGCGGAGAATTCTAAAGATAAGATTCGAACTCCATCCACTATTAACCGCGGCTTAAGAAGGCGTGCACAGCCTCGCAGGGTGTTTGAGAATGGGGATCCCAGTACGTCTTTGCGATTTAGGCCATATGTTTCTAGGGTTCCGTGGCATACTGGCGTAAGAGGTTTTCTCTCTCAGCTATTTCCGAGATATGGGCATTATTGTGGACCTAATTGGTCAAGTGGGAAAGATGGAGGATCTCCTATTTGGGACAAGCGGCCAATTGATTGGTTGGATTTTTGTTGCTACTGCCATGACATTGGTTATGACAGTCACGATCAGGCTGATCTGCTGAAGGCTGATTTAGCTTTTCTGGACTGCCTTGAGAGGCCAAATATGAGTACTAAAGGAGATGCGCGCATTGCTCACCTTTACAAGACAATGTGCACCACAGGTCTCAGGAATTTACTTATTCCGTACAGAAGTCATCTTTTGAAGCTGCAAGCAGGACAACCTTTGATTCAATTTGGATGGCTAAGCAATGTTAGATGGAGAGTTTGGAAATTTCAGAAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

245

Amino Acids

28.11

Weight (kDa)

9.48

Isoelectric Point (pI)

44.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29070 AT4G29070
fragaria_vesca FvH4_3g27811
malus_domestica MD03G1165500.v1.1
prunus_persica Prupe.4G265500_v2.0.a1
pyrus_communis pycom03g12010
rosa_chinensis RchiOBHm_Chr5g0050481
rosa_laevigata RLG00000034704
rosa_multiflora Rmu_sc0000459.1_g000004 Rmu_sc0003202.1_g000007
rosa_roxburghii Rroxscaffold_1G00030410
rosa_rugosa Rorug05G0261300
rosa_samantha Rh5AG333000 Rh5BG343100 Rh5CG370400 Rh5DG355700
rosa_wichuraiana Rw5G031460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 228, 574
AciI CCGC 4 cut(s) 182, 226, 228, 433
AclWI GGATC 3 cut(s) 269, 282, 421
AcoI YGGCCR 1 cut(s) 434
AcsI RAATTY 3 cut(s) 187, 619, 719
AcuI CTGAAG 1 cut(s) 530
AfaI GTAC 3 cut(s) 283, 559, 635
AfiI CCNNNNNNNGG 1 cut(s) 368
AflII CTTAAG 1 cut(s) 232
AgsI TTSAA 2 cut(s) 652, 680
AjnI CCWGG 1 cut(s) 6
AluBI AGCT 3 cut(s) 355, 524, 655
AluI AGCT 3 cut(s) 355, 524, 655
Alw21I GWGCWC 2 cut(s) 247, 605
Alw26I GTCTC 1 cut(s) 617
Alw44I GTGCAC 2 cut(s) 243, 601
AlwI GGATC 3 cut(s) 269, 282, 421
AoxI GGCC 4 cut(s) 39, 299, 434, 545
ApaI GGGCCC 1 cut(s) 43
ApaLI GTGCAC 2 cut(s) 243, 601
ApeKI GCWGC 1 cut(s) 655
ApoI RAATTY 3 cut(s) 187, 619, 719
AspLEI GCGC 2 cut(s) 574, 576
AspS9I GGNCC 3 cut(s) 39, 40, 383
AsuHPI GGTGA 1 cut(s) 575
AsuII TTCGAA 1 cut(s) 205
AvaII GGWCC 1 cut(s) 383
BaeGI GKGCMC 3 cut(s) 43, 247, 605
BamHI GGATCC 1 cut(s) 274
BanII GRGCYC 1 cut(s) 43
Bbv12I GWGCWC 2 cut(s) 247, 605
BbvI GCAGC 1 cut(s) 642
BccI CCATC 4 cut(s) 220, 401, 681, 699
BciT130I CCWGG 1 cut(s) 8
BcoDI GTCTC 1 cut(s) 617
BfaI CTAG 1 cut(s) 312
BfrI CTTAAG 1 cut(s) 232
BisI GCNGC 3 cut(s) 229, 434, 656
BlpI GCTNAGC 1 cut(s) 692
BlsI GCNGC 3 cut(s) 230, 435, 657
BmcAI AGTACT 1 cut(s) 559
Bme1390I CCNGG 1 cut(s) 8
Bme18I GGWCC 1 cut(s) 383
BmgT120I GGNCC 3 cut(s) 39, 40, 383
BmiI GGNNCC 4 cut(s) 41, 75, 276, 318
BmrFI CCNGG 1 cut(s) 8
BmrI ACTGGG 2 cut(s) 37, 273
BmsI GCATC 1 cut(s) 559
BmuI ACTGGG 2 cut(s) 37, 273
BplI GAGNNNNNCTC 2 cut(s) 330, 362
Bpu1102I GCTNAGC 1 cut(s) 692
Bpu14I TTCGAA 1 cut(s) 205
BpuEI CTTGAG 1 cut(s) 560
BsaI GGTCTC 1 cut(s) 617
BsaJI CCNNGG 5 cut(s) 7, 29, 173, 226, 320
Bsc4I CCNNNNNNNGG 1 cut(s) 368
Bse1I ACTGG 3 cut(s) 43, 279, 334
Bse3DI GCAATG 2 cut(s) 576, 703
BseBI CCWGG 1 cut(s) 8
BseDI CCNNGG 5 cut(s) 7, 29, 173, 226, 320
BseGI GGATG 2 cut(s) 212, 692
BseLI CCNNNNNNNGG 1 cut(s) 368
BseMI GCAATG 2 cut(s) 576, 703
BseMII CTCAG 2 cut(s) 365, 628
BseNI ACTGG 3 cut(s) 43, 279, 334
BsePI GCGCGC 1 cut(s) 572
BseSI GKGCMC 3 cut(s) 43, 247, 605
BseXI GCAGC 1 cut(s) 642
Bsh1236I CGCG 2 cut(s) 228, 574
BshFI GGCC 4 cut(s) 41, 301, 436, 547
BsiHKAI GWGCWC 2 cut(s) 247, 605
BslFI GGGAC 2 cut(s) 139, 440
BslI CCNNNNNNNGG 1 cut(s) 368
BsmAI GTCTC 1 cut(s) 617
BsmFI GGGAC 2 cut(s) 139, 440
BsnI GGCC 4 cut(s) 41, 301, 436, 547
Bso31I GGTCTC 1 cut(s) 617
Bsp119I TTCGAA 1 cut(s) 205
Bsp120I GGGCCC 1 cut(s) 39
Bsp1286I GDGCHC 3 cut(s) 43, 247, 605
Bsp143I GATC 4 cut(s) 274, 413, 493, 502
Bsp1720I GCTNAGC 1 cut(s) 692
Bsp19I CCATGG 1 cut(s) 173
BspACI CCGC 4 cut(s) 182, 226, 228, 433
BspANI GGCC 4 cut(s) 41, 301, 436, 547
BspCNI CTCAG 2 cut(s) 364, 627
BspFNI CGCG 2 cut(s) 228, 574
BspLI GGNNCC 4 cut(s) 41, 75, 276, 318
BspPI GGATC 3 cut(s) 269, 282, 421
BspT104I TTCGAA 1 cut(s) 205
BspTI CTTAAG 1 cut(s) 232
BspTNI GGTCTC 1 cut(s) 617
BsrDI GCAATG 2 cut(s) 576, 703
BsrI ACTGG 3 cut(s) 43, 279, 334
BssECI CCNNGG 5 cut(s) 7, 29, 173, 226, 320
BssHII GCGCGC 1 cut(s) 572
BssMI GATC 4 cut(s) 274, 413, 493, 502
BssT1I CCWWGG 2 cut(s) 29, 173
Bst2UI CCWGG 1 cut(s) 8
Bst4CI ACNGT 1 cut(s) 488
BstAFI CTTAAG 1 cut(s) 232
BstBI TTCGAA 1 cut(s) 205
BstC8I GCNNGC 3 cut(s) 243, 574, 660
BstDEI CTNAG 3 cut(s) 351, 614, 692
BstDSI CCRYGG 3 cut(s) 173, 226, 320
BstF5I GGATG 2 cut(s) 212, 692
BstFNI CGCG 2 cut(s) 228, 574
BstHHI GCGC 2 cut(s) 574, 576
BstKTI GATC 4 cut(s) 277, 416, 496, 505
BstMAI GTCTC 1 cut(s) 617
BstMBI GATC 4 cut(s) 274, 413, 493, 502
BstMWI GCNNNNNNNGC 4 cut(s) 247, 298, 521, 578
BstNI CCWGG 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 6
BstSLI GKGCMC 3 cut(s) 43, 247, 605
BstUI CGCG 2 cut(s) 228, 574
BstV1I GCAGC 1 cut(s) 642
BstX2I RGATCY 2 cut(s) 274, 413
BstXI CCANNNNNNTGG 3 cut(s) 125, 444, 476
BstYI RGATCY 2 cut(s) 274, 413
BsuRI GGCC 4 cut(s) 41, 301, 436, 547
BtgI CCRYGG 3 cut(s) 173, 226, 320
BtsCI GGATG 2 cut(s) 212, 692
Cac8I GCNNGC 3 cut(s) 243, 574, 660
CfoI GCGC 2 cut(s) 574, 576
Cfr13I GGNCC 3 cut(s) 39, 40, 383
Cfr42I CCGCGG 1 cut(s) 229
Csp6I GTAC 3 cut(s) 282, 558, 634
CviAII CATG 2 cut(s) 174, 470
CviQI GTAC 3 cut(s) 282, 558, 634
DdeI CTNAG 3 cut(s) 351, 614, 692
DpnI GATC 4 cut(s) 276, 415, 495, 504
DpnII GATC 4 cut(s) 274, 413, 493, 502
EaeI YGGCCR 1 cut(s) 434
EciI GGCGGA 1 cut(s) 197
Eco130I CCWWGG 2 cut(s) 29, 173
Eco24I GRGCYC 1 cut(s) 43
Eco31I GGTCTC 1 cut(s) 617
Eco47I GGWCC 1 cut(s) 383
Eco57I CTGAAG 1 cut(s) 530
EcoO109I RGGNCCY 1 cut(s) 39
EcoRI GAATTC 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 6
EcoT14I CCWWGG 2 cut(s) 29, 173
EcoT38I GRGCYC 1 cut(s) 43
ErhI CCWWGG 2 cut(s) 29, 173
FaeI CATG 2 cut(s) 177, 473
FaiI YATR 8 cut(s) 175, 304, 306, 327, 369, 471, 483, 554
FaqI GGGAC 2 cut(s) 139, 440
FatI CATG 2 cut(s) 173, 469
FauNDI CATATG 1 cut(s) 304
Fnu4HI GCNGC 3 cut(s) 229, 434, 656
FokI GGATG 2 cut(s) 199, 699
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 3 cut(s) 229, 434, 656
FspBI CTAG 1 cut(s) 312
GlaI GCGC 2 cut(s) 573, 575
GluI GCNGC 3 cut(s) 229, 434, 656
HaeIII GGCC 4 cut(s) 41, 301, 436, 547
HhaI GCGC 2 cut(s) 574, 576
Hin1II CATG 2 cut(s) 177, 473
Hin6I GCGC 2 cut(s) 572, 574
HinP1I GCGC 2 cut(s) 572, 574
HinfI GANTC 2 cut(s) 202, 676
HphI GGTGA 1 cut(s) 575
Hpy166II GTNNAC 3 cut(s) 245, 383, 603
Hpy188I TCNGA 2 cut(s) 363, 726
Hpy188III TCNNGA 3 cut(s) 491, 530, 616
Hpy8I GTNNAC 3 cut(s) 245, 383, 603
HpyAV CCTTC 3 cut(s) 167, 231, 505
HpyCH4III ACNGT 1 cut(s) 488
HpyCH4IV ACGT 1 cut(s) 284
HpyCH4V TGCA 3 cut(s) 245, 603, 658
HpyF10VI GCNNNNNNNGC 4 cut(s) 247, 298, 521, 578
HpyF3I CTNAG 3 cut(s) 351, 614, 692
HpySE526I ACGT 1 cut(s) 284
Hsp92II CATG 2 cut(s) 177, 473
HspAI GCGC 2 cut(s) 572, 574
KspI CCGCGG 1 cut(s) 229
Kzo9I GATC 4 cut(s) 274, 413, 493, 502
Lsp1109I GCAGC 1 cut(s) 642
LweI GCATC 1 cut(s) 559
MaeI CTAG 1 cut(s) 312
MaeII ACGT 1 cut(s) 284
MaeIII GTNAC 1 cut(s) 488
MalI GATC 4 cut(s) 276, 415, 495, 504
MboI GATC 4 cut(s) 274, 413, 493, 502
MfeI CAATTG 1 cut(s) 438
MflI RGATCY 2 cut(s) 274, 413
MhlI GDGCHC 3 cut(s) 43, 247, 605
MluCI AATT 8 cut(s) 62, 68, 187, 388, 438, 619, 680, 719
MmeI TCCRAC 2 cut(s) 113, 429
MnlI CCTC 4 cut(s) 261, 332, 404, 537
MseI TTAA 3 cut(s) 84, 222, 233
MslI CAYNNNNRTG 1 cut(s) 378
MspA1I CMGCKG 1 cut(s) 228
MspCI CTTAAG 1 cut(s) 232
MspR9I CCNGG 1 cut(s) 8
MunI CAATTG 1 cut(s) 438
MvaI CCWGG 1 cut(s) 8
MvnI CGCG 2 cut(s) 228, 574
MwoI GCNNNNNNNGC 4 cut(s) 247, 298, 521, 578
NcoI CCATGG 1 cut(s) 173
NdeI CATATG 1 cut(s) 304
NdeII GATC 4 cut(s) 274, 413, 493, 502
NlaIII CATG 2 cut(s) 177, 473
NlaIV GGNNCC 4 cut(s) 41, 75, 276, 318
NmuCI GTSAC 1 cut(s) 488
NspV TTCGAA 1 cut(s) 205
PauI GCGCGC 1 cut(s) 572
PfeI GAWTC 2 cut(s) 202, 676
PkrI GCNGC 3 cut(s) 230, 435, 657
Psp6I CCWGG 1 cut(s) 6
PspGI CCWGG 1 cut(s) 6
PspN4I GGNNCC 4 cut(s) 41, 75, 276, 318
PspOMI GGGCCC 1 cut(s) 39
PspPI GGNCC 3 cut(s) 39, 40, 383
PsuI RGATCY 2 cut(s) 274, 413
PteI GCGCGC 1 cut(s) 572
RsaI GTAC 3 cut(s) 283, 559, 635
RsaNI GTAC 3 cut(s) 282, 558, 634
RseI CAYNNNNRTG 1 cut(s) 378
SacII CCGCGG 1 cut(s) 229
SaqAI TTAA 3 cut(s) 84, 222, 233
SatI GCNGC 3 cut(s) 229, 434, 656
Sau3AI GATC 4 cut(s) 274, 413, 493, 502
Sau96I GGNCC 3 cut(s) 39, 40, 383
ScaI AGTACT 1 cut(s) 559
ScrFI CCNGG 1 cut(s) 8
SduI GDGCHC 3 cut(s) 43, 247, 605
SfaNI GCATC 1 cut(s) 559
Sfr303I CCGCGG 1 cut(s) 229
SfuI TTCGAA 1 cut(s) 205
SgrBI CCGCGG 1 cut(s) 229
SinI GGWCC 1 cut(s) 383
SmiMI CAYNNNNRTG 1 cut(s) 378
SmlI CTYRAG 2 cut(s) 232, 539
SmoI CTYRAG 2 cut(s) 232, 539
Sse9I AATT 8 cut(s) 62, 68, 187, 388, 438, 619, 680, 719
SsiI CCGC 4 cut(s) 182, 226, 228, 433
SspMI CTAG 1 cut(s) 312
StyD4I CCNGG 1 cut(s) 6
StyI CCWWGG 2 cut(s) 29, 173
TaaI ACNGT 1 cut(s) 488
TaiI ACGT 1 cut(s) 287
TaqI TCGA 2 cut(s) 105, 205
TasI AATT 8 cut(s) 62, 68, 187, 388, 438, 619, 680, 719
TatI WGTACW 1 cut(s) 557
TauI GCSGC 2 cut(s) 231, 436
TfiI GAWTC 2 cut(s) 202, 676
Tru1I TTAA 3 cut(s) 84, 222, 233
Tru9I TTAA 3 cut(s) 84, 222, 233
TseFI GTSAC 1 cut(s) 488
TseI GCWGC 1 cut(s) 655
Tsp45I GTSAC 1 cut(s) 488
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 309, 621
Vha464I CTTAAG 1 cut(s) 232
VneI GTGCAC 2 cut(s) 243, 601
VpaK11BI GGWCC 1 cut(s) 383
XapI RAATTY 3 cut(s) 187, 619, 719
XspI CTAG 1 cut(s) 312
ZrmI AGTACT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.