Prupe.4G265500_v2.0.a1

Phospholipase A2 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0014189
Physical Location & Seq
Forward (+)
19783631 .. 19787482
3852 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G265500.1

Sequence Viewer

Length: 720 bp
ATGAACTTTGGGTTTCTTGGTAATATCCCTTGGTTTAGGGCCCAATCAAACAATGATTTGGAACCAGCTCTACCAACAACTTCCCTTCTTGAACAACCTCAGCAGAAGGGTAGTTTTGGTATCAAGTTGTTGGGTTGGCCCCTTCTGTCCTTTGTTCCTTGGGTGTCAGTGAATTCTAAAGATAAGATTCGAACTCCATCCACTATTAACCGCGGTTTGAGAAGGCGTGCACAACCTCGTGGGGTGTTTGAGAATGGTGATTTCAATAACTTTTTGCGCTTTAGGCCATATGTTTCTAGGGTCCCATGGCATACTGGCGTAAGAGGTTTTCTTTCTCAGCTATTCCCAAGATATGGGCATTATTGTGGGCCAAATTGGTCAAGTGGGAAGGATGGAGGATCTCCTCTTTGGGACAAGCGGCCAATTGATTGGTTGGACTTTTGTTGCTACTGTCATGACATAGGTTATGACAGTCATGATCAGGCTGATTTGCTGAAGGCTGATTTAGCTTTTCTGGAGTGCCTTGAGAGGCCAAATATGGCTACCAAAGGGGACGCTAGCATTGCTCACCTTTATAAGACAATGTGCATCACAGGTCTCAGGAATTTACTTATCCCTTACAGAACTCACCTTTTGAAACTGCAAGCAGGACAACCCTTGATTCAATTTGGATGGCTAAGCAATGTAAGATGGAGAGGTTGGAATTTTCAGAAAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

240

Amino Acids

27.52

Weight (kDa)

9.6

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29070 AT4G29070
fragaria_vesca FvH4_3g27811
malus_domestica MD03G1165500.v1.1
prunus_persica Prupe.4G265500_v2.0.a1
pyrus_communis pycom03g12010
rosa_chinensis RchiOBHm_Chr5g0050481
rosa_laevigata RLG00000034704
rosa_multiflora Rmu_sc0000459.1_g000004 Rmu_sc0003202.1_g000007
rosa_roxburghii Rroxscaffold_1G00030410
rosa_rugosa Rorug05G0261300
rosa_samantha Rh5AG333000 Rh5BG343100 Rh5CG370400 Rh5DG355700
rosa_wichuraiana Rw5G031460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 576
AccB7I CCANNNNNTGG 1 cut(s) 353
AccII CGCG 1 cut(s) 213
AciI CCGC 3 cut(s) 211, 213, 418
AclWI GGATC 1 cut(s) 406
AcoI YGGCCR 1 cut(s) 419
AcsI RAATTY 3 cut(s) 172, 604, 703
AcuI CTGAAG 1 cut(s) 515
AfiI CCNNNNNNNGG 1 cut(s) 353
AgsI TTSAA 4 cut(s) 92, 265, 637, 665
AluBI AGCT 3 cut(s) 68, 340, 509
AluI AGCT 3 cut(s) 68, 340, 509
Alw21I GWGCWC 1 cut(s) 232
Alw26I GTCTC 1 cut(s) 602
Alw44I GTGCAC 1 cut(s) 228
AlwI GGATC 1 cut(s) 406
AoxI GGCC 6 cut(s) 39, 137, 284, 368, 419, 530
ApaI GGGCCC 1 cut(s) 43
ApaLI GTGCAC 1 cut(s) 228
ApoI RAATTY 3 cut(s) 172, 604, 703
AspLEI GCGC 1 cut(s) 279
AspS9I GGNCC 5 cut(s) 39, 40, 138, 301, 368
AsuHPI GGTGA 3 cut(s) 269, 560, 620
AsuII TTCGAA 1 cut(s) 190
AsuNHI GCTAGC 1 cut(s) 557
AvaII GGWCC 1 cut(s) 301
BaeGI GKGCMC 2 cut(s) 43, 232
BanII GRGCYC 1 cut(s) 43
BauI CACGAG 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 232
BbvCI CCTCAGC 1 cut(s) 99
BccI CCATC 4 cut(s) 205, 386, 666, 684
BclI TGATCA 1 cut(s) 478
BcoDI GTCTC 1 cut(s) 602
BfaI CTAG 2 cut(s) 297, 558
BisI GCNGC 1 cut(s) 419
BlpI GCTNAGC 1 cut(s) 677
BlsI GCNGC 1 cut(s) 420
Bme18I GGWCC 1 cut(s) 301
BmgT120I GGNCC 5 cut(s) 39, 40, 138, 301, 368
BmiI GGNNCC 5 cut(s) 41, 63, 140, 302, 303
BmsI GCATC 1 cut(s) 597
BmtI GCTAGC 1 cut(s) 561
BpmI CTGGAG 1 cut(s) 536
Bpu10I CCTNAGC 1 cut(s) 99
Bpu1102I GCTNAGC 1 cut(s) 677
Bpu14I TTCGAA 1 cut(s) 190
BpuEI CTTGAG 1 cut(s) 545
BsaI GGTCTC 1 cut(s) 602
BsaJI CCNNGG 4 cut(s) 29, 158, 211, 305
Bsc4I CCNNNNNNNGG 1 cut(s) 353
Bse1I ACTGG 1 cut(s) 319
Bse3DI GCAATG 2 cut(s) 561, 688
BseDI CCNNGG 4 cut(s) 29, 158, 211, 305
BseGI GGATG 3 cut(s) 197, 397, 677
BseLI CCNNNNNNNGG 1 cut(s) 353
BseMI GCAATG 2 cut(s) 561, 688
BseMII CTCAG 3 cut(s) 113, 350, 613
BseNI ACTGG 1 cut(s) 319
BseRI GAGGAG 1 cut(s) 393
BseSI GKGCMC 2 cut(s) 43, 232
Bsh1236I CGCG 1 cut(s) 213
BshFI GGCC 6 cut(s) 41, 139, 286, 370, 421, 532
BsiHKAI GWGCWC 1 cut(s) 232
BslFI GGGAC 3 cut(s) 287, 425, 566
BslI CCNNNNNNNGG 1 cut(s) 353
BsmAI GTCTC 1 cut(s) 602
BsmFI GGGAC 3 cut(s) 287, 425, 566
BsnI GGCC 6 cut(s) 41, 139, 286, 370, 421, 532
Bso31I GGTCTC 1 cut(s) 602
Bsp119I TTCGAA 1 cut(s) 190
Bsp120I GGGCCC 1 cut(s) 39
Bsp1286I GDGCHC 2 cut(s) 43, 232
Bsp143I GATC 2 cut(s) 398, 478
Bsp1720I GCTNAGC 1 cut(s) 677
Bsp19I CCATGG 1 cut(s) 305
BspACI CCGC 3 cut(s) 211, 213, 418
BspANI GGCC 6 cut(s) 41, 139, 286, 370, 421, 532
BspCNI CTCAG 3 cut(s) 112, 349, 612
BspFNI CGCG 1 cut(s) 213
BspHI TCATGA 2 cut(s) 454, 475
BspLI GGNNCC 5 cut(s) 41, 63, 140, 302, 303
BspOI GCTAGC 1 cut(s) 561
BspPI GGATC 1 cut(s) 406
BspT104I TTCGAA 1 cut(s) 190
BspTNI GGTCTC 1 cut(s) 602
BsrDI GCAATG 2 cut(s) 561, 688
BsrI ACTGG 1 cut(s) 319
BssECI CCNNGG 4 cut(s) 29, 158, 211, 305
BssMI GATC 2 cut(s) 398, 478
BssSI CACGAG 1 cut(s) 237
BssT1I CCWWGG 3 cut(s) 29, 158, 305
Bst2BI CACGAG 1 cut(s) 237
Bst4CI ACNGT 2 cut(s) 452, 473
BstBI TTCGAA 1 cut(s) 190
BstC8I GCNNGC 3 cut(s) 228, 559, 645
BstDEI CTNAG 4 cut(s) 99, 336, 599, 677
BstDSI CCRYGG 2 cut(s) 211, 305
BstF5I GGATG 3 cut(s) 197, 397, 677
BstFNI CGCG 1 cut(s) 213
BstHHI GCGC 1 cut(s) 279
BstKTI GATC 2 cut(s) 401, 481
BstMAI GTCTC 1 cut(s) 602
BstMBI GATC 2 cut(s) 398, 478
BstMWI GCNNNNNNNGC 3 cut(s) 283, 506, 563
BstSLI GKGCMC 2 cut(s) 43, 232
BstUI CGCG 1 cut(s) 213
BstX2I RGATCY 1 cut(s) 398
BstXI CCANNNNNNTGG 1 cut(s) 429
BstYI RGATCY 1 cut(s) 398
BsuRI GGCC 6 cut(s) 41, 139, 286, 370, 421, 532
BtgI CCRYGG 2 cut(s) 211, 305
BtsCI GGATG 3 cut(s) 197, 397, 677
BtsIMutI CAGTG 1 cut(s) 174
Cac8I GCNNGC 3 cut(s) 228, 559, 645
CciI TCATGA 2 cut(s) 454, 475
CfoI GCGC 1 cut(s) 279
Cfr13I GGNCC 5 cut(s) 39, 40, 138, 301, 368
Cfr42I CCGCGG 1 cut(s) 214
CseI GACGC 1 cut(s) 563
CviAII CATG 3 cut(s) 306, 455, 476
DdeI CTNAG 4 cut(s) 99, 336, 599, 677
DpnI GATC 2 cut(s) 400, 480
DpnII GATC 2 cut(s) 398, 478
EaeI YGGCCR 1 cut(s) 419
Eco130I CCWWGG 3 cut(s) 29, 158, 305
Eco24I GRGCYC 1 cut(s) 43
Eco31I GGTCTC 1 cut(s) 602
Eco47I GGWCC 1 cut(s) 301
Eco57I CTGAAG 1 cut(s) 515
EcoO109I RGGNCCY 2 cut(s) 39, 301
EcoRI GAATTC 1 cut(s) 172
EcoT14I CCWWGG 3 cut(s) 29, 158, 305
EcoT38I GRGCYC 1 cut(s) 43
ErhI CCWWGG 3 cut(s) 29, 158, 305
FaeI CATG 3 cut(s) 309, 458, 479
FaqI GGGAC 3 cut(s) 287, 425, 566
FatI CATG 3 cut(s) 305, 454, 475
FauNDI CATATG 1 cut(s) 289
FbaI TGATCA 1 cut(s) 478
Fnu4HI GCNGC 1 cut(s) 419
FokI GGATG 3 cut(s) 184, 404, 684
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 1 cut(s) 419
FspBI CTAG 2 cut(s) 297, 558
GlaI GCGC 1 cut(s) 278
GluI GCNGC 1 cut(s) 419
GsuI CTGGAG 1 cut(s) 536
HaeIII GGCC 6 cut(s) 41, 139, 286, 370, 421, 532
HgaI GACGC 1 cut(s) 563
HhaI GCGC 1 cut(s) 279
Hin1II CATG 3 cut(s) 309, 458, 479
Hin6I GCGC 1 cut(s) 277
HinP1I GCGC 1 cut(s) 277
HinfI GANTC 2 cut(s) 187, 661
HphI GGTGA 3 cut(s) 269, 560, 620
Hpy166II GTNNAC 1 cut(s) 230
Hpy188I TCNGA 1 cut(s) 711
Hpy188III TCNNGA 5 cut(s) 89, 455, 476, 515, 601
Hpy8I GTNNAC 1 cut(s) 230
HpyAV CCTTC 6 cut(s) 95, 100, 152, 216, 382, 490
HpyCH4III ACNGT 2 cut(s) 452, 473
HpyCH4V TGCA 3 cut(s) 230, 588, 643
HpyF10VI GCNNNNNNNGC 3 cut(s) 283, 506, 563
HpyF3I CTNAG 4 cut(s) 99, 336, 599, 677
Hsp92II CATG 3 cut(s) 309, 458, 479
HspAI GCGC 1 cut(s) 277
KflI GGGWCCC 1 cut(s) 301
Ksp22I TGATCA 1 cut(s) 478
KspI CCGCGG 1 cut(s) 214
Kzo9I GATC 2 cut(s) 398, 478
LpnPI CCDG 7 cut(s) 78, 300, 467, 500, 579, 586, 633
LweI GCATC 1 cut(s) 597
MaeI CTAG 2 cut(s) 297, 558
MalI GATC 2 cut(s) 400, 480
MboI GATC 2 cut(s) 398, 478
MfeI CAATTG 1 cut(s) 423
MflI RGATCY 1 cut(s) 398
MhlI GDGCHC 2 cut(s) 43, 232
MluCI AATT 6 cut(s) 172, 373, 423, 604, 665, 703
MmeI TCCRAC 2 cut(s) 414, 680
MnlI CCTC 7 cut(s) 108, 246, 317, 389, 414, 522, 689
MseI TTAA 2 cut(s) 207, 718
MslI CAYNNNNRTG 1 cut(s) 363
MspA1I CMGCKG 1 cut(s) 213
MunI CAATTG 1 cut(s) 423
MvnI CGCG 1 cut(s) 213
MwoI GCNNNNNNNGC 3 cut(s) 283, 506, 563
NcoI CCATGG 1 cut(s) 305
NdeI CATATG 1 cut(s) 289
NdeII GATC 2 cut(s) 398, 478
NheI GCTAGC 1 cut(s) 557
NlaIII CATG 3 cut(s) 309, 458, 479
NlaIV GGNNCC 5 cut(s) 41, 63, 140, 302, 303
NspV TTCGAA 1 cut(s) 190
PagI TCATGA 2 cut(s) 454, 475
PfeI GAWTC 2 cut(s) 187, 661
PflMI CCANNNNNTGG 1 cut(s) 353
PkrI GCNGC 1 cut(s) 420
PpuMI RGGWCCY 1 cut(s) 301
PsiI TTATAA 1 cut(s) 576
Psp5II RGGWCCY 1 cut(s) 301
PspN4I GGNNCC 5 cut(s) 41, 63, 140, 302, 303
PspOMI GGGCCC 1 cut(s) 39
PspPI GGNCC 5 cut(s) 39, 40, 138, 301, 368
PspPPI RGGWCCY 1 cut(s) 301
PsrI GAACNNNNNNTAC 2 cut(s) 54, 86
PsuI RGATCY 1 cut(s) 398
RseI CAYNNNNRTG 1 cut(s) 363
SacII CCGCGG 1 cut(s) 214
SaqAI TTAA 2 cut(s) 207, 718
SatI GCNGC 1 cut(s) 419
Sau3AI GATC 2 cut(s) 398, 478
Sau96I GGNCC 5 cut(s) 39, 40, 138, 301, 368
SduI GDGCHC 2 cut(s) 43, 232
SfaNI GCATC 1 cut(s) 597
Sfr303I CCGCGG 1 cut(s) 214
SfuI TTCGAA 1 cut(s) 190
SgrBI CCGCGG 1 cut(s) 214
SinI GGWCC 1 cut(s) 301
SmiMI CAYNNNNRTG 1 cut(s) 363
SmlI CTYRAG 1 cut(s) 524
SmoI CTYRAG 1 cut(s) 524
Sse9I AATT 6 cut(s) 172, 373, 423, 604, 665, 703
SsiI CCGC 3 cut(s) 211, 213, 418
SspMI CTAG 2 cut(s) 297, 558
StyI CCWWGG 3 cut(s) 29, 158, 305
TaaI ACNGT 2 cut(s) 452, 473
TaqI TCGA 1 cut(s) 190
TasI AATT 6 cut(s) 172, 373, 423, 604, 665, 703
TauI GCSGC 1 cut(s) 421
TfiI GAWTC 2 cut(s) 187, 661
Tru1I TTAA 2 cut(s) 207, 718
Tru9I TTAA 2 cut(s) 207, 718
TscAI CASTG 1 cut(s) 174
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 174
Van91I CCANNNNNTGG 1 cut(s) 353
VneI GTGCAC 1 cut(s) 228
VpaK11BI GGWCC 1 cut(s) 301
XapI RAATTY 3 cut(s) 172, 604, 703
XspI CTAG 2 cut(s) 297, 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.