FvH4_3g27811

Phospholipase A2 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0014189
Physical Location & Seq
Reverse (-)
20835592 .. 20836912
1321 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g27811.t1

Sequence Viewer

Length: 615 bp
ATGAAGTTTGGGGTTGTTGGTAACATCCTTTGGTTCAGAGCCCAACCAAACAGTGAACAAGAACCTGAGGCTGGTTTTGATCTCAAATGGGTGGCTGCTAAACCATCATCCACTATCAACCGGCAGTTGAGAAGGCGTGCCCAACCACGCGCTCCTCCTCGTGACTTTTTGCGCTTCCGGCCTTATGTTTCCAGGGTTCCATGGCATACTGGTGTTAGAGGGTTCCTTTCTCAGCTGTTTCCGAGATACGGCCATTATTGTGGCCCTAATTTTTCGAGTGGCAAGGATGGTGGATCTCCTGTTTGGGACCAGCGGCCCATCGATTGGTTGGATTTCTGTTGCTACTGCCATGACATTGGCTATGACACTCATGATCAGGCTGAGCTGCTCAAGGCTGATTTAGCATTTCTCGACTGCCTTGAGAAGCCTAATATGAGCACCAAAGGAGATGCTGGCGTTGCTCTCCTTTATAAGACAATGTGCACCACAGGTCTCAGGAATTTCCTTATACCCTACAGAACTCACCTTGTGAAGCTGACATCAAGACCACCATTGATTCAGTTTGGATGGCTAAGCAATGTTAGATGGAGAGGTTGGAGTTTTCAGAAAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

23.57

Weight (kDa)

9.63

Isoelectric Point (pI)

50.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29070 AT4G29070
fragaria_vesca FvH4_3g27811
malus_domestica MD03G1165500.v1.1
prunus_persica Prupe.4G265500_v2.0.a1
pyrus_communis pycom03g12010
rosa_chinensis RchiOBHm_Chr5g0050481
rosa_laevigata RLG00000034704
rosa_multiflora Rmu_sc0000459.1_g000004 Rmu_sc0003202.1_g000007
rosa_roxburghii Rroxscaffold_1G00030410
rosa_rugosa Rorug05G0261300
rosa_samantha Rh5AG333000 Rh5BG343100 Rh5CG370400 Rh5DG355700
rosa_wichuraiana Rw5G031460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 471
AccB7I CCANNNNNTGG 1 cut(s) 324
AccII CGCG 1 cut(s) 150
AciI CCGC 1 cut(s) 313
AclWI GGATC 1 cut(s) 301
AcoI YGGCCR 1 cut(s) 250
AcsI RAATTY 1 cut(s) 499
AdeI CACNNNGTG 1 cut(s) 529
AfiI CCNNNNNNNGG 3 cut(s) 71, 248, 324
AjnI CCWGG 1 cut(s) 191
AluBI AGCT 3 cut(s) 235, 385, 535
AluI AGCT 3 cut(s) 235, 385, 535
Alw21I GWGCWC 2 cut(s) 440, 485
Alw26I GTCTC 1 cut(s) 497
Alw44I GTGCAC 1 cut(s) 481
AlwI GGATC 1 cut(s) 301
AoxI GGCC 4 cut(s) 179, 250, 262, 314
ApaLI GTGCAC 1 cut(s) 481
ApeKI GCWGC 2 cut(s) 95, 385
ApoI RAATTY 1 cut(s) 499
AspLEI GCGC 2 cut(s) 152, 174
AspS9I GGNCC 3 cut(s) 263, 307, 315
AsuHPI GGTGA 1 cut(s) 515
AvaII GGWCC 1 cut(s) 307
AxyI CCTNAGG 1 cut(s) 66
BaeGI GKGCMC 2 cut(s) 142, 485
BanII GRGCYC 1 cut(s) 43
BauI CACGAG 1 cut(s) 159
Bbv12I GWGCWC 2 cut(s) 440, 485
BbvI GCAGC 2 cut(s) 82, 372
BccI CCATC 5 cut(s) 112, 281, 326, 561, 579
BceAI ACGGC 1 cut(s) 265
BciT130I CCWGG 1 cut(s) 193
BclI TGATCA 1 cut(s) 373
BcoDI GTCTC 1 cut(s) 497
BfmI CTRYAG 1 cut(s) 514
BisI GCNGC 3 cut(s) 96, 314, 386
BlpI GCTNAGC 2 cut(s) 381, 572
BlsI GCNGC 3 cut(s) 97, 315, 387
Bme1390I CCNGG 1 cut(s) 193
Bme18I GGWCC 1 cut(s) 307
BmgT120I GGNCC 3 cut(s) 263, 307, 315
BmiI GGNNCC 3 cut(s) 198, 224, 308
BmrFI CCNGG 1 cut(s) 193
BmsI GCATC 1 cut(s) 439
Bpu1102I GCTNAGC 2 cut(s) 381, 572
BpuEI CTTGAG 2 cut(s) 374, 440
Bsa29I ATCGAT 1 cut(s) 321
BsaI GGTCTC 1 cut(s) 497
BsaJI CCNNGG 2 cut(s) 192, 200
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 248, 324
Bse118I RCCGGY 1 cut(s) 120
Bse1I ACTGG 1 cut(s) 214
Bse21I CCTNAGG 1 cut(s) 66
Bse3DI GCAATG 1 cut(s) 583
BseBI CCWGG 1 cut(s) 193
BseCI ATCGAT 1 cut(s) 321
BseDI CCNNGG 2 cut(s) 192, 200
BseGI GGATG 4 cut(s) 24, 107, 292, 572
BseLI CCNNNNNNNGG 3 cut(s) 71, 248, 324
BseMI GCAATG 1 cut(s) 583
BseMII CTCAG 4 cut(s) 57, 245, 372, 508
BseNI ACTGG 1 cut(s) 214
BseRI GAGGAG 2 cut(s) 144, 147
BseSI GKGCMC 2 cut(s) 142, 485
BseXI GCAGC 2 cut(s) 82, 372
Bsh1236I CGCG 1 cut(s) 150
BshFI GGCC 4 cut(s) 181, 252, 264, 316
BshVI ATCGAT 1 cut(s) 321
BsiHKAI GWGCWC 2 cut(s) 440, 485
BsiSI CCGG 2 cut(s) 121, 178
BslFI GGGAC 1 cut(s) 320
BslI CCNNNNNNNGG 3 cut(s) 71, 248, 324
BsmAI GTCTC 1 cut(s) 497
BsmFI GGGAC 1 cut(s) 320
BsnI GGCC 4 cut(s) 181, 252, 264, 316
Bso31I GGTCTC 1 cut(s) 497
Bsp1286I GDGCHC 4 cut(s) 43, 142, 440, 485
Bsp143I GATC 3 cut(s) 79, 293, 373
Bsp1720I GCTNAGC 2 cut(s) 381, 572
Bsp19I CCATGG 1 cut(s) 200
BspACI CCGC 1 cut(s) 313
BspANI GGCC 4 cut(s) 181, 252, 264, 316
BspCNI CTCAG 4 cut(s) 58, 244, 373, 507
BspDI ATCGAT 1 cut(s) 321
BspFNI CGCG 1 cut(s) 150
BspHI TCATGA 1 cut(s) 370
BspLI GGNNCC 3 cut(s) 198, 224, 308
BspPI GGATC 1 cut(s) 301
BspTNI GGTCTC 1 cut(s) 497
BsrDI GCAATG 1 cut(s) 583
BsrFI RCCGGY 1 cut(s) 120
BsrI ACTGG 1 cut(s) 214
BssAI RCCGGY 1 cut(s) 120
BssECI CCNNGG 2 cut(s) 192, 200
BssMI GATC 3 cut(s) 79, 293, 373
BssSI CACGAG 1 cut(s) 159
BssT1I CCWWGG 1 cut(s) 200
Bst2BI CACGAG 1 cut(s) 159
Bst2UI CCWGG 1 cut(s) 193
Bst4CI ACNGT 1 cut(s) 53
BstC8I GCNNGC 2 cut(s) 138, 454
BstDEI CTNAG 5 cut(s) 66, 231, 381, 494, 572
BstDSI CCRYGG 1 cut(s) 200
BstF5I GGATG 4 cut(s) 24, 107, 292, 572
BstFNI CGCG 1 cut(s) 150
BstHHI GCGC 2 cut(s) 152, 174
BstKTI GATC 3 cut(s) 82, 296, 376
BstMAI GTCTC 1 cut(s) 497
BstMBI GATC 3 cut(s) 79, 293, 373
BstMWI GCNNNNNNNGC 3 cut(s) 178, 401, 458
BstNI CCWGG 1 cut(s) 193
BstSCI CCNGG 1 cut(s) 191
BstSFI CTRYAG 1 cut(s) 514
BstSLI GKGCMC 2 cut(s) 142, 485
BstUI CGCG 1 cut(s) 150
BstV1I GCAGC 2 cut(s) 82, 372
BstX2I RGATCY 1 cut(s) 293
BstXI CCANNNNNNTGG 2 cut(s) 260, 356
BstYI RGATCY 1 cut(s) 293
Bsu15I ATCGAT 1 cut(s) 321
Bsu36I CCTNAGG 1 cut(s) 66
BsuRI GGCC 4 cut(s) 181, 252, 264, 316
BsuTUI ATCGAT 1 cut(s) 321
BtgI CCRYGG 1 cut(s) 200
BtsCI GGATG 4 cut(s) 24, 107, 292, 572
BtsIMutI CAGTG 1 cut(s) 58
Cac8I GCNNGC 2 cut(s) 138, 454
CciI TCATGA 1 cut(s) 370
CfoI GCGC 2 cut(s) 152, 174
Cfr10I RCCGGY 1 cut(s) 120
Cfr13I GGNCC 3 cut(s) 263, 307, 315
ClaI ATCGAT 1 cut(s) 321
CspCI CAANNNNNGTGG 2 cut(s) 271, 306
CviAII CATG 3 cut(s) 201, 350, 371
DdeI CTNAG 5 cut(s) 66, 231, 381, 494, 572
DpnI GATC 3 cut(s) 81, 295, 375
DpnII GATC 3 cut(s) 79, 293, 373
DraIII CACNNNGTG 1 cut(s) 529
EaeI YGGCCR 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 200
Eco24I GRGCYC 1 cut(s) 43
Eco31I GGTCTC 1 cut(s) 497
Eco47I GGWCC 1 cut(s) 307
Eco81I CCTNAGG 1 cut(s) 66
EcoRII CCWGG 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 200
EcoT38I GRGCYC 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 200
FaeI CATG 3 cut(s) 204, 353, 374
FaiI YATR 9 cut(s) 186, 202, 207, 351, 363, 372, 434, 471, 509
FaqI GGGAC 1 cut(s) 320
FatI CATG 3 cut(s) 200, 349, 370
FbaI TGATCA 1 cut(s) 373
Fnu4HI GCNGC 3 cut(s) 96, 314, 386
FokI GGATG 4 cut(s) 11, 94, 299, 579
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 3 cut(s) 96, 314, 386
GlaI GCGC 2 cut(s) 151, 173
GluI GCNGC 3 cut(s) 96, 314, 386
HaeIII GGCC 4 cut(s) 181, 252, 264, 316
HapII CCGG 2 cut(s) 121, 178
HhaI GCGC 2 cut(s) 152, 174
Hin1II CATG 3 cut(s) 204, 353, 374
Hin6I GCGC 2 cut(s) 150, 172
HinP1I GCGC 2 cut(s) 150, 172
HinfI GANTC 1 cut(s) 556
HpaII CCGG 2 cut(s) 121, 178
HphI GGTGA 1 cut(s) 515
Hpy166II GTNNAC 2 cut(s) 56, 483
Hpy188I TCNGA 3 cut(s) 38, 243, 606
Hpy188III TCNNGA 5 cut(s) 161, 371, 410, 496, 543
Hpy8I GTNNAC 2 cut(s) 56, 483
HpyAV CCTTC 1 cut(s) 126
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4V TGCA 1 cut(s) 483
HpyF10VI GCNNNNNNNGC 3 cut(s) 178, 401, 458
HpyF3I CTNAG 5 cut(s) 66, 231, 381, 494, 572
Hsp92II CATG 3 cut(s) 204, 353, 374
HspAI GCGC 2 cut(s) 150, 172
Ksp22I TGATCA 1 cut(s) 373
Kzo9I GATC 3 cut(s) 79, 293, 373
LmnI GCTCC 1 cut(s) 157
Lsp1109I GCAGC 2 cut(s) 82, 372
LweI GCATC 1 cut(s) 439
MaeIII GTNAC 2 cut(s) 20, 161
MalI GATC 3 cut(s) 81, 295, 375
MboI GATC 3 cut(s) 79, 293, 373
MflI RGATCY 1 cut(s) 293
MhlI GDGCHC 4 cut(s) 43, 142, 440, 485
MluCI AATT 2 cut(s) 268, 499
MmeI TCCRAC 2 cut(s) 309, 575
MnlI CCTC 5 cut(s) 61, 165, 168, 212, 584
MslI CAYNNNNRTG 2 cut(s) 210, 258
MspA1I CMGCKG 2 cut(s) 235, 313
MspI CCGG 2 cut(s) 121, 178
MspR9I CCNGG 1 cut(s) 193
MvaI CCWGG 1 cut(s) 193
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 3 cut(s) 178, 401, 458
NcoI CCATGG 1 cut(s) 200
NdeII GATC 3 cut(s) 79, 293, 373
NlaIII CATG 3 cut(s) 204, 353, 374
NlaIV GGNNCC 3 cut(s) 198, 224, 308
NmuCI GTSAC 1 cut(s) 161
PagI TCATGA 1 cut(s) 370
PfeI GAWTC 1 cut(s) 556
PflMI CCANNNNNTGG 1 cut(s) 324
PkrI GCNGC 3 cut(s) 97, 315, 387
PsiI TTATAA 1 cut(s) 471
Psp6I CCWGG 1 cut(s) 191
PspGI CCWGG 1 cut(s) 191
PspN4I GGNNCC 3 cut(s) 198, 224, 308
PspPI GGNCC 3 cut(s) 263, 307, 315
PsuI RGATCY 1 cut(s) 293
PvuII CAGCTG 1 cut(s) 235
RseI CAYNNNNRTG 2 cut(s) 210, 258
SatI GCNGC 3 cut(s) 96, 314, 386
Sau3AI GATC 3 cut(s) 79, 293, 373
Sau96I GGNCC 3 cut(s) 263, 307, 315
ScrFI CCNGG 1 cut(s) 193
SduI GDGCHC 4 cut(s) 43, 142, 440, 485
SetI ASST 8 cut(s) 67, 237, 387, 493, 528, 537, 595, 614
SfaNI GCATC 1 cut(s) 439
SfcI CTRYAG 1 cut(s) 514
SinI GGWCC 1 cut(s) 307
SmiMI CAYNNNNRTG 2 cut(s) 210, 258
SmlI CTYRAG 2 cut(s) 389, 419
SmoI CTYRAG 2 cut(s) 389, 419
Sse9I AATT 2 cut(s) 268, 499
SsiI CCGC 1 cut(s) 313
StyD4I CCNGG 1 cut(s) 191
StyI CCWWGG 1 cut(s) 200
TaaI ACNGT 1 cut(s) 53
TaqI TCGA 3 cut(s) 275, 321, 411
TasI AATT 2 cut(s) 268, 499
TauI GCSGC 1 cut(s) 316
TfiI GAWTC 1 cut(s) 556
TscAI CASTG 1 cut(s) 58
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 2 cut(s) 95, 385
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 58
Van91I CCANNNNNTGG 1 cut(s) 324
VneI GTGCAC 1 cut(s) 481
VpaK11BI GGWCC 1 cut(s) 307
XapI RAATTY 1 cut(s) 499
XcmI CCANNNNNNNNNTGG 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.