AT4G29560

Fanconi Anaemia group E protein FANCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014432
Physical Location & Seq
Reverse (-)
14503873 .. 14506015
2143 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G29560.1

Sequence Viewer

Length: 1482 bp
ATGGAGGAGTGGATTCCACTATTCGACATTTTCTTGAAGAGTCCATCTCCGGAGGCTGAGGCTTCGCTGTGGTTAGACCAGGCTTCGAACCTTTTTTCTTCCTCCTCCTCTGCGGCGGCGCCGATCAACCGGAGCTCGTTTGTTTCATTGCTGAAGAAACAATGCGATCAGAATTCATCTCCGGTTACGAAGAAGGTTCTTTTCATTGAGACATTACCGAACATGGTTCAGTCAAAGATTCTATCTTTTCTTCTTTTCGAGTATCAGAGGTTTTGCGTTAGTGATTTGGTTTGGCTGGCTAGAGAAATGTTGGGTAGTGGTGGTAATAAAGTTGTCGATTTCTGGGTTCAGAGAGATGCACATAACCTGCTCGACAGAATTCCTAAACCAAAATTTGAATGGATATCTAATCTAGATTTGGATTCAGCTGATGAAGACAGCATGAAGCAGGTATTTGACTCTGTACCTGATTGGCTCAGTGAGAAACTTGGTTCTGCTGGTACAATTCTTCCATGGCTTCCTGTATCCTGTGATGATGTAGATTCAGAAATGCTGGTTGTTGATTCTTGGAATGGGAAGGAGATAACTCAAATCAAAGAGGATATGGAAGAAGATCAGAGAGAAGTTGTGCATAACATTGATCATACCATGACTGTTGGGTTACAAGCTCATGATCATGAAATGGCTGTGAATCTTAGAGCTCAGATTTCGAACTTTGAGTCTACTTCTGAAGTTTTAACCTTGTGTAACGACATTCGGAGACTTTGCTTGGAGAAGGGTAAGGACTCTTTGAGAGTTTTGGCTTTGATTGAGCCTTGGAATGCAGATGATGAGACTGCTGCAGTTTTACTTTCGAGTTTGCATAATGGAAGTGAGGAAGAAGAGCTTGGTTGGCCAAGCCATGTTCTATGTTCGATCGTGCTTCCAAAGTTTTTGTCTCTTGAGAAGTCTGCCTCTCGTGTGCTGATGTCTTCAACAATCGAGTTTTGCAAGATCCACCAAAGAGCAGCTGAGTATGCATTGGTGTTCCCTTTAATACTCAGGAAAGAAGGGATAAACAATTTCATTTGTGAGGTGATTTCAAGGGTTTTGAAAGAGTGCTTGCACTTGGGTCAAATCTCTGGTTTTTGCCAGAAGTTGCTTTGTGGAAGAACACAAGAGCGGAGGTTTATGTTCCTTCCCTGCCATCGAGATCTCATATCGGATGAACTGACATGGAATGAATATCTGTTTATCCTTTTCCAGAACATATTGATCCATGGCATCCCTTTATCCCAAGATTCCGTCGATTGTCTTGTTTCCAAGGTTCAGGAGTTGGCGGAAAGGTATTCGAAATCGCTAAAATTTGGAAACTTCTTGCTACATTTTACTGCCAAATGTGCTCCGATGCTACAGGCTCATAAGTATCAGCTGATCGAATCAGTTAAGTGCACCAACAGTCTAGTTACAAAATCTATCCTATCGAAACTCAATGCCCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 map03460
Pfam Domains
Protein Families
FA_FANCE

Protein Analysis

493

Amino Acids

55.96

Weight (kDa)

5.19

Isoelectric Point (pI)

49.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29560
fragaria_vesca FvH4_1g07200
malus_domestica MD02G1076500.v1.1 MD15G1205200.v1.1
prunus_persica Prupe.7G211900_v2.0.a1
pyrus_communis pycom02g06080 pycom15g18200
rosa_chinensis RchiOBHm_Chr2g0093101
rosa_laevigata RLG00000016368
rosa_multiflora Rmu_sc0006865.1_g000010
rosa_roxburghii Rroxscaffold_2G00148510
rosa_rugosa Rorug02G0032800
rosa_samantha Rh2AG078100 Rh2BG079400 Rh2CG081800 Rh2DG077100
rosa_wichuraiana Rw2G006820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 375, 439
AccB1I GGYRCC 1 cut(s) 118
AccBSI CCGCTC 1 cut(s) 1162
AccI GTMKAC 1 cut(s) 722
AccIII TCCGGA 1 cut(s) 49
AciI CCGC 4 cut(s) 113, 116, 1162, 1319
AclWI GGATC 2 cut(s) 988, 1249
AcoI YGGCCR 1 cut(s) 893
AcsI RAATTY 4 cut(s) 172, 378, 392, 1343
AcuI CTGAAG 2 cut(s) 173, 750
AcyI GRCGYC 1 cut(s) 119
AfaI GTAC 2 cut(s) 465, 502
AgsI TTSAA 5 cut(s) 37, 398, 975, 1083, 1093
AjnI CCWGG 1 cut(s) 78
AjuI GAANNNNNNNTTGG 2 cut(s) 870, 902
AluBI AGCT 7 cut(s) 135, 428, 668, 701, 886, 1010, 1411
AluI AGCT 7 cut(s) 135, 428, 668, 701, 886, 1010, 1411
Alw21I GWGCWC 4 cut(s) 137, 703, 1384, 1433
Alw26I GTCTC 4 cut(s) 203, 754, 827, 942
Alw44I GTGCAC 1 cut(s) 1429
AlwI GGATC 2 cut(s) 988, 1249
Aor13HI TCCGGA 1 cut(s) 49
AoxI GGCC 1 cut(s) 893
ApaLI GTGCAC 1 cut(s) 1429
ApeKI GCWGC 2 cut(s) 839, 1007
ApoI RAATTY 4 cut(s) 172, 378, 392, 1343
ArsI GACNNNNNNTTYG 4 cut(s) 704, 736, 920, 952
AspLEI GCGC 1 cut(s) 121
AsuHPI GGTGA 1 cut(s) 1087
AsuII TTCGAA 3 cut(s) 86, 710, 1331
BaeGI GKGCMC 1 cut(s) 1433
BalI TGGCCA 1 cut(s) 895
BanI GGYRCC 1 cut(s) 118
BanII GRGCYC 2 cut(s) 137, 703
BauI CACGAG 1 cut(s) 957
BbsI GAAGAC 2 cut(s) 441, 963
Bbv12I GWGCWC 4 cut(s) 137, 703, 1384, 1433
BbvCI CCTCAGC 1 cut(s) 57
BbvI GCAGC 2 cut(s) 826, 1019
BccI CCATC 2 cut(s) 52, 1194
BciT130I CCWGG 1 cut(s) 80
BciVI GTATCC 1 cut(s) 535
BclI TGATCA 2 cut(s) 640, 673
BcoDI GTCTC 4 cut(s) 203, 754, 827, 942
BfaI CTAG 3 cut(s) 300, 413, 1442
BfmI CTRYAG 3 cut(s) 840, 1391, 1478
BfoI RGCGCY 1 cut(s) 122
BfuAI ACCTGC 2 cut(s) 375, 439
BfuI GTATCC 1 cut(s) 535
BglII AGATCT 1 cut(s) 1192
BisI GCNGC 4 cut(s) 114, 117, 840, 1008
BlsI GCNGC 4 cut(s) 115, 118, 841, 1009
Bme1390I CCNGG 1 cut(s) 80
BmiI GGNNCC 1 cut(s) 120
BmrFI CCNGG 1 cut(s) 80
BmsI GCATC 3 cut(s) 346, 1272, 1377
BpiI GAAGAC 2 cut(s) 441, 963
BplI GAGNNNNNCTC 2 cut(s) 31, 63
Bpu10I CCTNAGC 1 cut(s) 57
Bpu14I TTCGAA 3 cut(s) 86, 710, 1331
BpuEI CTTGAG 1 cut(s) 962
BsaHI GRCGYC 1 cut(s) 119
BsaJI CCNNGG 4 cut(s) 512, 815, 1258, 1302
BsaWI WCCGGW 3 cut(s) 49, 129, 181
Bse3DI GCAATG 1 cut(s) 146
BseAI TCCGGA 1 cut(s) 49
BseBI CCWGG 1 cut(s) 80
BseDI CCNNGG 4 cut(s) 512, 815, 1258, 1302
BseGI GGATG 2 cut(s) 1210, 1263
BseMI GCAATG 1 cut(s) 146
BseMII CTCAG 5 cut(s) 48, 490, 716, 1002, 1054
BseRI GAGGAG 3 cut(s) 20, 94, 97
BseSI GKGCMC 1 cut(s) 1433
BseXI GCAGC 2 cut(s) 826, 1019
Bsh1285I CGRYCG 1 cut(s) 918
BshFI GGCC 1 cut(s) 895
BshNI GGYRCC 1 cut(s) 118
BsiEI CGRYCG 1 cut(s) 918
BsiHKAI GWGCWC 4 cut(s) 137, 703, 1384, 1433
BsiSI CCGG 3 cut(s) 50, 130, 182
BsmAI GTCTC 4 cut(s) 203, 754, 827, 942
BsmI GAATGC 1 cut(s) 826
BsnI GGCC 1 cut(s) 895
Bsp119I TTCGAA 3 cut(s) 86, 710, 1331
Bsp1286I GDGCHC 4 cut(s) 137, 703, 1384, 1433
Bsp13I TCCGGA 1 cut(s) 49
Bsp19I CCATGG 2 cut(s) 512, 1258
BspACI CCGC 4 cut(s) 113, 116, 1162, 1319
BspANI GGCC 1 cut(s) 895
BspCNI CTCAG 5 cut(s) 49, 489, 715, 1003, 1053
BspEI TCCGGA 1 cut(s) 49
BspHI TCATGA 2 cut(s) 670, 676
BspLI GGNNCC 1 cut(s) 120
BspMAI CTGCAG 1 cut(s) 844
BspMI ACCTGC 2 cut(s) 375, 439
BspPI GGATC 2 cut(s) 988, 1249
BspQI GCTCTTC 1 cut(s) 876
BspT104I TTCGAA 3 cut(s) 86, 710, 1331
BspT107I GGYRCC 1 cut(s) 118
BsrBI CCGCTC 1 cut(s) 1162
BsrDI GCAATG 1 cut(s) 146
BssECI CCNNGG 4 cut(s) 512, 815, 1258, 1302
BssNI GRCGYC 1 cut(s) 119
BssSI CACGAG 1 cut(s) 957
BssT1I CCWWGG 4 cut(s) 512, 815, 1258, 1302
Bst2BI CACGAG 1 cut(s) 957
Bst2UI CCWGG 1 cut(s) 80
Bst4CI ACNGT 2 cut(s) 655, 1439
Bst6I CTCTTC 2 cut(s) 32, 876
BstACI GRCGYC 1 cut(s) 119
BstBI TTCGAA 3 cut(s) 86, 710, 1331
BstC8I GCNNGC 2 cut(s) 297, 1103
BstDEI CTNAG 6 cut(s) 57, 476, 695, 702, 1011, 1040
BstDSI CCRYGG 2 cut(s) 512, 1258
BstF5I GGATG 2 cut(s) 1210, 1263
BstH2I RGCGCY 1 cut(s) 122
BstHHI GCGC 1 cut(s) 121
BstMAI GTCTC 4 cut(s) 203, 754, 827, 942
BstMCI CGRYCG 1 cut(s) 918
BstMWI GCNNNNNNNGC 3 cut(s) 892, 1016, 1379
BstNI CCWGG 1 cut(s) 80
BstSCI CCNGG 1 cut(s) 78
BstSFI CTRYAG 3 cut(s) 840, 1391, 1478
BstSLI GKGCMC 1 cut(s) 1433
BstV1I GCAGC 2 cut(s) 826, 1019
BstV2I GAAGAC 2 cut(s) 441, 963
BstX2I RGATCY 2 cut(s) 993, 1192
BstYI RGATCY 2 cut(s) 993, 1192
BsuI GTATCC 1 cut(s) 535
BsuRI GGCC 1 cut(s) 895
BtgI CCRYGG 2 cut(s) 512, 1258
BtsCI GGATG 2 cut(s) 1210, 1263
BtsIMutI CAGTG 1 cut(s) 484
BveI ACCTGC 2 cut(s) 375, 439
Cac8I GCNNGC 2 cut(s) 297, 1103
CciI TCATGA 2 cut(s) 670, 676
CfoI GCGC 1 cut(s) 121
Csp6I GTAC 2 cut(s) 464, 501
CviAII CATG 9 cut(s) 223, 442, 513, 649, 671, 677, 902, 1215, 1259
CviQI GTAC 2 cut(s) 464, 501
DdeI CTNAG 6 cut(s) 57, 476, 695, 702, 1011, 1040
DinI GGCGCC 1 cut(s) 120
EaeI YGGCCR 1 cut(s) 893
Eam1104I CTCTTC 2 cut(s) 32, 876
EarI CTCTTC 2 cut(s) 32, 876
EciI GGCGGA 1 cut(s) 1334
Ecl136II GAGCTC 2 cut(s) 135, 701
Eco130I CCWWGG 4 cut(s) 512, 815, 1258, 1302
Eco24I GRGCYC 2 cut(s) 137, 703
Eco32I GATATC 1 cut(s) 405
Eco53kI GAGCTC 2 cut(s) 135, 701
Eco57I CTGAAG 2 cut(s) 173, 750
EcoICRI GAGCTC 2 cut(s) 135, 701
EcoRI GAATTC 2 cut(s) 172, 378
EcoRII CCWGG 1 cut(s) 78
EcoRV GATATC 1 cut(s) 405
EcoT14I CCWWGG 4 cut(s) 512, 815, 1258, 1302
EcoT22I ATGCAT 1 cut(s) 1021
EcoT38I GRGCYC 2 cut(s) 137, 703
EgeI GGCGCC 1 cut(s) 120
EheI GGCGCC 1 cut(s) 120
ErhI CCWWGG 4 cut(s) 512, 815, 1258, 1302
FaeI CATG 9 cut(s) 226, 445, 516, 652, 674, 680, 905, 1218, 1262
FalI AAGNNNNNCTT 2 cut(s) 870, 902
FatI CATG 9 cut(s) 222, 441, 512, 648, 670, 676, 901, 1214, 1258
FbaI TGATCA 2 cut(s) 640, 673
FblI GTMKAC 1 cut(s) 722
Fnu4HI GCNGC 4 cut(s) 114, 117, 840, 1008
FokI GGATG 2 cut(s) 1217, 1250
FriOI GRGCYC 2 cut(s) 137, 703
Fsp4HI GCNGC 4 cut(s) 114, 117, 840, 1008
FspBI CTAG 3 cut(s) 300, 413, 1442
GlaI GCGC 1 cut(s) 120
GluI GCNGC 4 cut(s) 114, 117, 840, 1008
HaeII RGCGCY 1 cut(s) 122
HaeIII GGCC 1 cut(s) 895
HapII CCGG 3 cut(s) 50, 130, 182
HhaI GCGC 1 cut(s) 121
Hin1I GRCGYC 1 cut(s) 119
Hin1II CATG 9 cut(s) 226, 445, 516, 652, 674, 680, 905, 1218, 1262
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HpaII CCGG 3 cut(s) 50, 130, 182
HphI GGTGA 1 cut(s) 1087
Hpy166II GTNNAC 2 cut(s) 723, 1431
Hpy8I GTNNAC 2 cut(s) 723, 1431
Hpy99I CGWCG 1 cut(s) 1289
HpyAV CCTTC 5 cut(s) 187, 571, 769, 1043, 1187
HpyCH4III ACNGT 2 cut(s) 655, 1439
HpyCH4V TGCA 9 cut(s) 359, 631, 824, 842, 862, 990, 1019, 1105, 1431
HpyF10VI GCNNNNNNNGC 3 cut(s) 892, 1016, 1379
HpyF3I CTNAG 6 cut(s) 57, 476, 695, 702, 1011, 1040
Hsp92I GRCGYC 1 cut(s) 119
Hsp92II CATG 9 cut(s) 226, 445, 516, 652, 674, 680, 905, 1218, 1262
HspAI GCGC 1 cut(s) 119
KasI GGCGCC 1 cut(s) 118
Kpn2I TCCGGA 1 cut(s) 49
Ksp22I TGATCA 2 cut(s) 640, 673
LguI GCTCTTC 1 cut(s) 876
LmnI GCTCC 2 cut(s) 132, 1387
Lsp1109I GCAGC 2 cut(s) 826, 1019
LweI GCATC 3 cut(s) 346, 1272, 1377
MaeI CTAG 3 cut(s) 300, 413, 1442
MaeIII GTNAC 4 cut(s) 184, 660, 746, 1444
MbiI CCGCTC 1 cut(s) 1162
MflI RGATCY 2 cut(s) 993, 1192
MhlI GDGCHC 4 cut(s) 137, 703, 1384, 1433
MlsI TGGCCA 1 cut(s) 895
MluCI AATT 6 cut(s) 172, 378, 392, 504, 1060, 1343
MluNI TGGCCA 1 cut(s) 895
Mly113I GGCGCC 1 cut(s) 119
MlyI GAGTC 4 cut(s) 49, 452, 728, 779
Mox20I TGGCCA 1 cut(s) 895
Mph1103I ATGCAT 1 cut(s) 1021
MroI TCCGGA 1 cut(s) 49
MscI TGGCCA 1 cut(s) 895
MseI TTAA 3 cut(s) 737, 1034, 1425
MslI CAYNNNNRTG 1 cut(s) 675
Msp20I TGGCCA 1 cut(s) 895
MspA1I CMGCKG 3 cut(s) 428, 1010, 1411
MspI CCGG 3 cut(s) 50, 130, 182
MspR9I CCNGG 1 cut(s) 80
Mva1269I GAATGC 1 cut(s) 826
MvaI CCWGG 1 cut(s) 80
MwoI GCNNNNNNNGC 3 cut(s) 892, 1016, 1379
NarI GGCGCC 1 cut(s) 119
NcoI CCATGG 2 cut(s) 512, 1258
NlaIII CATG 9 cut(s) 226, 445, 516, 652, 674, 680, 905, 1218, 1262
NlaIV GGNNCC 1 cut(s) 120
NsiI ATGCAT 1 cut(s) 1021
NspV TTCGAA 3 cut(s) 86, 710, 1331
PagI TCATGA 2 cut(s) 670, 676
PciSI GCTCTTC 1 cut(s) 876
PctI GAATGC 1 cut(s) 826
PfeI GAWTC 8 cut(s) 13, 238, 422, 542, 563, 691, 1280, 1418
PkrI GCNGC 4 cut(s) 115, 118, 841, 1009
Ple19I CGATCG 1 cut(s) 918
PleI GAGTC 4 cut(s) 48, 452, 727, 779
PluTI GGCGCC 1 cut(s) 122
PpsI GAGTC 4 cut(s) 48, 452, 727, 779
Psp124BI GAGCTC 2 cut(s) 137, 703
Psp6I CCWGG 1 cut(s) 78
PspGI CCWGG 1 cut(s) 78
PspN4I GGNNCC 1 cut(s) 120
PstI CTGCAG 1 cut(s) 844
PsuI RGATCY 2 cut(s) 993, 1192
PvuI CGATCG 1 cut(s) 918
PvuII CAGCTG 3 cut(s) 428, 1010, 1411
RsaI GTAC 2 cut(s) 465, 502
RsaNI GTAC 2 cut(s) 464, 501
RseI CAYNNNNRTG 1 cut(s) 675
SacI GAGCTC 2 cut(s) 137, 703
SapI GCTCTTC 1 cut(s) 876
SaqAI TTAA 3 cut(s) 737, 1034, 1425
SatI GCNGC 4 cut(s) 114, 117, 840, 1008
SchI GAGTC 4 cut(s) 49, 452, 728, 779
ScrFI CCNGG 1 cut(s) 80
SduI GDGCHC 4 cut(s) 137, 703, 1384, 1433
SfaNI GCATC 3 cut(s) 346, 1272, 1377
SfcI CTRYAG 3 cut(s) 840, 1391, 1478
SfoI GGCGCC 1 cut(s) 120
SfuI TTCGAA 3 cut(s) 86, 710, 1331
SmiMI CAYNNNNRTG 1 cut(s) 675
SmlI CTYRAG 1 cut(s) 941
SmoI CTYRAG 1 cut(s) 941
Sse9I AATT 6 cut(s) 172, 378, 392, 504, 1060, 1343
SsiI CCGC 4 cut(s) 113, 116, 1162, 1319
SspDI GGCGCC 1 cut(s) 118
SspMI CTAG 3 cut(s) 300, 413, 1442
SstI GAGCTC 2 cut(s) 137, 703
StyD4I CCNGG 1 cut(s) 78
StyI CCWWGG 4 cut(s) 512, 815, 1258, 1302
TaaI ACNGT 2 cut(s) 655, 1439
TasI AATT 6 cut(s) 172, 378, 392, 504, 1060, 1343
TauI GCSGC 2 cut(s) 116, 119
TfiI GAWTC 8 cut(s) 13, 238, 422, 542, 563, 691, 1280, 1418
Tru1I TTAA 3 cut(s) 737, 1034, 1425
Tru9I TTAA 3 cut(s) 737, 1034, 1425
TscAI CASTG 1 cut(s) 484
TseI GCWGC 2 cut(s) 839, 1007
TspDTI ATGAA 9 cut(s) 135, 165, 193, 447, 458, 693, 1054, 1221, 1236
TspGWI ACGGA 1 cut(s) 1273
TspRI CASTG 1 cut(s) 484
VneI GTGCAC 1 cut(s) 1429
XapI RAATTY 4 cut(s) 172, 378, 392, 1343
XbaI TCTAGA 1 cut(s) 412
XcmI CCANNNNNNNNNTGG 1 cut(s) 396
XmiI GTMKAC 1 cut(s) 722
XspI CTAG 3 cut(s) 300, 413, 1442
Zsp2I ATGCAT 1 cut(s) 1021
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.