Rw2G006820

Fanconi Anaemia group E protein FANCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0014432
Physical Location & Seq
Forward (+)
6606184 .. 6607818
1635 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G006820.1

Sequence Viewer

Length: 1098 bp
ATGTCTGCGTCAAATTACGAGTGGATTTCCTGCTTGGGTTTGGATTCCGGGGAGGAGGAGGATGAGTTTGAGTCGTTGCCGGATTGGCTTAAGGTGTCGGCGGCTGAGAGTGATTCAGTGATGCCATGGCTGCCTATATCGGCTGAGGTGTTGAATTCAAGGACAGTGAGTGGTGATGATGGTGGTTCGTTGAGTCAAGTTGGAGGGGATGAAGATGAGGATTTGGATATGGATGATATTGCCGAGGAAATGAATATTGATTCCCCAAAAAGTGTTGATATTGAACCTGGAGTTAGAGAGAAGGCTATTAGTTTGAAAGAGCGGGTTGTGAGTTTTGAATCAACTTCAAAGACTGTGGGATTAGCAAATGAAATTCGTGAACTTTGCTTGGGCAAAGGAGGAGAATGTTTCGCGGTTTTGGGTCTGATTGAACCTTGGTTAGCTGATGATGAGACTGCTTCAGTTCTACTTTCTCATCTGACAAGTGGAGGCGAGGAAGAGCTTACTTGGCCAAGCCAGGTTCTGTGCTCGATTGTCCTGCCCAAGTTGTTGGTTCTTGAGGAACCAGCCTCACGTGTGCTAGTGACCGCAATAGTAGAGTACTGCAGGCTACACCAAAGGGCTGCTGAGTATGCACTGTTGTTTCCACTGATTCTCCAACAGGAAGGCATCAACAATCCTATATATGATGTGATCACAAGAGTCATCAAGGAAAGCTTGCACCCGGCTCATGTCTCATCTTTCTGTCAGAAGCTGCTGTGTGGAGAAAAAGATGAGAGGAGAGTCATTTGTCTTCCTTGCCACAAATATTTGATAACTGATAAAATGGTATGGACAGAATCATTGTTTAGCCTGCTGCAAAGCATTTTGAATCATAATATTCATTTTACACAGAGTTCTGTTGACCATATTGTTTACCAGGTTCAGCAATTGGCTGAAACATTTTCTAACTCTCTGAAATTTGGGAACTTTTTGTTATGTTTAGTCACCAAATGCTCTCCATTGTTGAAGCCTCACAAGCTTATGTTGACTAAAGTAGTTGAGCAAAACAAAACATTCTTAGCTAAATCTATATTATGTAAAATAGCTGGCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 map03460
Pfam Domains
Protein Families
FA_FANCE

Protein Analysis

365

Amino Acids

40.5

Weight (kDa)

4.7

Isoelectric Point (pI)

52.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29560
fragaria_vesca FvH4_1g07200
malus_domestica MD02G1076500.v1.1 MD15G1205200.v1.1
prunus_persica Prupe.7G211900_v2.0.a1
pyrus_communis pycom02g06080 pycom15g18200
rosa_chinensis RchiOBHm_Chr2g0093101
rosa_laevigata RLG00000016368
rosa_multiflora Rmu_sc0006865.1_g000010
rosa_roxburghii Rroxscaffold_2G00148510
rosa_rugosa Rorug02G0032800
rosa_samantha Rh2AG078100 Rh2BG079400 Rh2CG081800 Rh2DG077100
rosa_wichuraiana Rw2G006820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 322
AccII CGCG 1 cut(s) 413
AciI CCGC 4 cut(s) 101, 322, 413, 588
AcoI YGGCCR 1 cut(s) 509
AcsI RAATTY 3 cut(s) 154, 372, 959
AcuI CTGAAG 1 cut(s) 444
AcvI CACGTG 1 cut(s) 575
AfaI GTAC 1 cut(s) 602
AflII CTTAAG 1 cut(s) 89
AflIII ACRYGT 1 cut(s) 574
AgsI TTSAA 9 cut(s) 154, 159, 284, 316, 338, 348, 431, 871, 1009
AjnI CCWGG 3 cut(s) 286, 516, 918
AluBI AGCT 7 cut(s) 443, 502, 717, 754, 1021, 1064, 1088
AluI AGCT 7 cut(s) 443, 502, 717, 754, 1021, 1064, 1088
Alw21I GWGCWC 1 cut(s) 530
Alw26I GTCTC 2 cut(s) 446, 739
AlwNI CAGNNNCTG 2 cut(s) 523, 754
AoxI GGCC 1 cut(s) 509
ApeKI GCWGC 4 cut(s) 130, 623, 754, 856
ApoI RAATTY 3 cut(s) 154, 372, 959
AsuC2I CCSGG 2 cut(s) 49, 725
AsuHPI GGTGA 2 cut(s) 185, 979
BalI TGGCCA 1 cut(s) 511
BbrPI CACGTG 1 cut(s) 575
BbsI GAAGAC 1 cut(s) 785
Bbv12I GWGCWC 1 cut(s) 530
BbvCI CCTCAGC 1 cut(s) 144
BbvI GCAGC 4 cut(s) 117, 610, 741, 843
BccI CCATC 1 cut(s) 173
BcgI CGANNNNNNTGC 2 cut(s) 520, 554
BciT130I CCWGG 3 cut(s) 288, 518, 920
BclI TGATCA 1 cut(s) 693
BcnI CCSGG 2 cut(s) 49, 725
BcoDI GTCTC 2 cut(s) 446, 739
BfaI CTAG 1 cut(s) 581
BfmI CTRYAG 1 cut(s) 604
BfrI CTTAAG 1 cut(s) 89
BglI GCCNNNNNGGC 1 cut(s) 85
BisI GCNGC 5 cut(s) 102, 131, 624, 755, 857
BlsI GCNGC 5 cut(s) 103, 132, 625, 756, 858
BmcAI AGTACT 1 cut(s) 602
Bme1390I CCNGG 5 cut(s) 49, 288, 518, 725, 920
BmiI GGNNCC 1 cut(s) 564
BmrFI CCNGG 5 cut(s) 49, 288, 518, 725, 920
BmsI GCATC 2 cut(s) 111, 678
BpiI GAAGAC 1 cut(s) 785
BpmI CTGGAG 1 cut(s) 309
Bpu10I CCTNAGC 1 cut(s) 144
BpuEI CTTGAG 1 cut(s) 578
BpuMI CCSGG 2 cut(s) 49, 725
BsaAI YACGTR 1 cut(s) 575
BsaJI CCNNGG 4 cut(s) 48, 125, 243, 434
BsaXI ACNNNNNCTCC 4 cut(s) 50, 80, 639, 669
BseBI CCWGG 3 cut(s) 288, 518, 920
BseDI CCNNGG 4 cut(s) 48, 125, 243, 434
BseGI GGATG 3 cut(s) 67, 214, 238
BseMII CTCAG 3 cut(s) 96, 135, 618
BseRI GAGGAG 4 cut(s) 68, 71, 414, 793
BseXI GCAGC 4 cut(s) 117, 610, 741, 843
Bsh1236I CGCG 1 cut(s) 413
BshFI GGCC 1 cut(s) 511
BsiHKAI GWGCWC 1 cut(s) 530
BsiSI CCGG 3 cut(s) 48, 80, 725
BsmAI GTCTC 2 cut(s) 446, 739
BsnI GGCC 1 cut(s) 511
Bsp1286I GDGCHC 1 cut(s) 530
Bsp143I GATC 1 cut(s) 693
Bsp19I CCATGG 1 cut(s) 125
BspACI CCGC 4 cut(s) 101, 322, 413, 588
BspANI GGCC 1 cut(s) 511
BspCNI CTCAG 3 cut(s) 97, 136, 619
BspFNI CGCG 1 cut(s) 413
BspLI GGNNCC 1 cut(s) 564
BspMAI CTGCAG 1 cut(s) 608
BspQI GCTCTTC 1 cut(s) 492
BspTI CTTAAG 1 cut(s) 89
BsrBI CCGCTC 1 cut(s) 322
BssECI CCNNGG 4 cut(s) 48, 125, 243, 434
BssMI GATC 1 cut(s) 693
BssT1I CCWWGG 2 cut(s) 125, 434
Bst2UI CCWGG 3 cut(s) 288, 518, 920
Bst4CI ACNGT 3 cut(s) 166, 355, 639
Bst6I CTCTTC 1 cut(s) 492
BstAFI CTTAAG 1 cut(s) 89
BstBAI YACGTR 1 cut(s) 575
BstC8I GCNNGC 4 cut(s) 608, 719, 854, 1090
BstDEI CTNAG 4 cut(s) 105, 144, 627, 1060
BstDSI CCRYGG 1 cut(s) 125
BstF5I GGATG 3 cut(s) 67, 214, 238
BstFNI CGCG 1 cut(s) 413
BstKTI GATC 1 cut(s) 696
BstMAI GTCTC 2 cut(s) 446, 739
BstMBI GATC 1 cut(s) 693
BstMWI GCNNNNNNNGC 5 cut(s) 85, 130, 508, 632, 1018
BstNI CCWGG 3 cut(s) 288, 518, 920
BstSCI CCNGG 5 cut(s) 47, 286, 516, 723, 918
BstSFI CTRYAG 1 cut(s) 604
BstUI CGCG 1 cut(s) 413
BstV1I GCAGC 4 cut(s) 117, 610, 741, 843
BstV2I GAAGAC 1 cut(s) 785
BstXI CCANNNNNNTGG 1 cut(s) 550
BsuRI GGCC 1 cut(s) 511
BtgI CCRYGG 1 cut(s) 125
BtsCI GGATG 3 cut(s) 67, 214, 238
BtsIMutI CAGTG 4 cut(s) 123, 171, 635, 647
Cac8I GCNNGC 4 cut(s) 608, 719, 854, 1090
CaiI CAGNNNCTG 2 cut(s) 523, 754
CsiI ACCWGGT 1 cut(s) 918
Csp6I GTAC 1 cut(s) 601
CspCI CAANNNNNGTGG 2 cut(s) 336, 371
CviAII CATG 2 cut(s) 126, 731
CviQI GTAC 1 cut(s) 601
DdeI CTNAG 4 cut(s) 105, 144, 627, 1060
DpnI GATC 1 cut(s) 695
DpnII GATC 1 cut(s) 693
EaeI YGGCCR 1 cut(s) 509
Eam1104I CTCTTC 1 cut(s) 492
EarI CTCTTC 1 cut(s) 492
Eco130I CCWWGG 2 cut(s) 125, 434
Eco57I CTGAAG 1 cut(s) 444
Eco72I CACGTG 1 cut(s) 575
EcoRI GAATTC 1 cut(s) 154
EcoRII CCWGG 3 cut(s) 286, 516, 918
EcoT14I CCWWGG 2 cut(s) 125, 434
ErhI CCWWGG 2 cut(s) 125, 434
FaeI CATG 2 cut(s) 129, 734
FalI AAGNNNNNCTT 2 cut(s) 701, 733
FatI CATG 2 cut(s) 125, 730
FauI CCCGC 1 cut(s) 315
FbaI TGATCA 1 cut(s) 693
Fnu4HI GCNGC 5 cut(s) 102, 131, 624, 755, 857
FokI GGATG 3 cut(s) 74, 221, 245
Fsp4HI GCNGC 5 cut(s) 102, 131, 624, 755, 857
FspBI CTAG 1 cut(s) 581
GluI GCNGC 5 cut(s) 102, 131, 624, 755, 857
GsuI CTGGAG 1 cut(s) 309
HaeIII GGCC 1 cut(s) 511
HapII CCGG 3 cut(s) 48, 80, 725
Hin1II CATG 2 cut(s) 129, 734
HincII GTYRAC 2 cut(s) 904, 1029
HindII GTYRAC 2 cut(s) 904, 1029
HindIII AAGCTT 2 cut(s) 715, 1019
HpaII CCGG 3 cut(s) 48, 80, 725
HphI GGTGA 2 cut(s) 185, 979
Hpy166II GTNNAC 4 cut(s) 380, 904, 916, 1029
Hpy188I TCNGA 4 cut(s) 426, 480, 750, 957
Hpy188III TCNNGA 2 cut(s) 377, 557
Hpy8I GTNNAC 4 cut(s) 380, 904, 916, 1029
HpyAV CCTTC 2 cut(s) 295, 659
HpyCH4III ACNGT 3 cut(s) 166, 355, 639
HpyCH4IV ACGT 1 cut(s) 574
HpyCH4V TGCA 4 cut(s) 606, 635, 721, 859
HpyF10VI GCNNNNNNNGC 5 cut(s) 85, 130, 508, 632, 1018
HpyF3I CTNAG 4 cut(s) 105, 144, 627, 1060
HpySE526I ACGT 1 cut(s) 574
Hsp92II CATG 2 cut(s) 129, 734
Ksp22I TGATCA 1 cut(s) 693
Kzo9I GATC 1 cut(s) 693
LguI GCTCTTC 1 cut(s) 492
Lsp1109I GCAGC 4 cut(s) 117, 610, 741, 843
LweI GCATC 2 cut(s) 111, 678
MabI ACCWGGT 1 cut(s) 918
MaeI CTAG 1 cut(s) 581
MaeII ACGT 1 cut(s) 574
MaeIII GTNAC 2 cut(s) 583, 985
MalI GATC 1 cut(s) 695
MbiI CCGCTC 1 cut(s) 322
MboI GATC 1 cut(s) 693
MboII GAAGA 3 cut(s) 224, 509, 785
MfeI CAATTG 1 cut(s) 929
MhlI GDGCHC 1 cut(s) 530
MlsI TGGCCA 1 cut(s) 511
MluCI AATT 5 cut(s) 13, 154, 372, 929, 959
MluNI TGGCCA 1 cut(s) 511
MlyI GAGTC 4 cut(s) 80, 202, 711, 792
MmeI TCCRAC 2 cut(s) 181, 682
Mox20I TGGCCA 1 cut(s) 511
MscI TGGCCA 1 cut(s) 511
MseI TTAA 1 cut(s) 90
Msp20I TGGCCA 1 cut(s) 511
MspCI CTTAAG 1 cut(s) 89
MspI CCGG 3 cut(s) 48, 80, 725
MspR9I CCNGG 5 cut(s) 49, 288, 518, 725, 920
MunI CAATTG 1 cut(s) 929
MvaI CCWGG 3 cut(s) 288, 518, 920
MvnI CGCG 1 cut(s) 413
MwoI GCNNNNNNNGC 5 cut(s) 85, 130, 508, 632, 1018
NciI CCSGG 2 cut(s) 49, 725
NcoI CCATGG 1 cut(s) 125
NdeII GATC 1 cut(s) 693
NlaIII CATG 2 cut(s) 129, 734
NlaIV GGNNCC 1 cut(s) 564
NmeAIII GCCGAG 1 cut(s) 268
NmuCI GTSAC 2 cut(s) 583, 985
PciSI GCTCTTC 1 cut(s) 492
PfeI GAWTC 7 cut(s) 44, 113, 260, 338, 652, 839, 871
PkrI GCNGC 5 cut(s) 103, 132, 625, 756, 858
PleI GAGTC 4 cut(s) 79, 201, 710, 791
PmaCI CACGTG 1 cut(s) 575
PmlI CACGTG 1 cut(s) 575
PpsI GAGTC 4 cut(s) 79, 201, 710, 791
Ppu21I YACGTR 1 cut(s) 575
Psp6I CCWGG 3 cut(s) 286, 516, 918
PspCI CACGTG 1 cut(s) 575
PspGI CCWGG 3 cut(s) 286, 516, 918
PspN4I GGNNCC 1 cut(s) 564
PstI CTGCAG 1 cut(s) 608
PstNI CAGNNNCTG 2 cut(s) 523, 754
RsaI GTAC 1 cut(s) 602
RsaNI GTAC 1 cut(s) 601
SapI GCTCTTC 1 cut(s) 492
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 5 cut(s) 102, 131, 624, 755, 857
Sau3AI GATC 1 cut(s) 693
ScaI AGTACT 1 cut(s) 602
SchI GAGTC 4 cut(s) 80, 202, 711, 792
ScrFI CCNGG 5 cut(s) 49, 288, 518, 725, 920
SduI GDGCHC 1 cut(s) 530
SexAI ACCWGGT 1 cut(s) 918
SfaNI GCATC 2 cut(s) 111, 678
SfcI CTRYAG 1 cut(s) 604
SmlI CTYRAG 2 cut(s) 89, 557
SmoI CTYRAG 2 cut(s) 89, 557
Sse9I AATT 5 cut(s) 13, 154, 372, 929, 959
SsiI CCGC 4 cut(s) 101, 322, 413, 588
SspI AATATT 3 cut(s) 256, 809, 880
SspMI CTAG 1 cut(s) 581
StyD4I CCNGG 5 cut(s) 47, 286, 516, 723, 918
StyI CCWWGG 2 cut(s) 125, 434
TaaI ACNGT 3 cut(s) 166, 355, 639
TaiI ACGT 1 cut(s) 577
TaqI TCGA 1 cut(s) 530
TasI AATT 5 cut(s) 13, 154, 372, 929, 959
TatI WGTACW 1 cut(s) 600
TauI GCSGC 1 cut(s) 104
TfiI GAWTC 7 cut(s) 44, 113, 260, 338, 652, 839, 871
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TscAI CASTG 4 cut(s) 123, 171, 642, 654
TseFI GTSAC 2 cut(s) 583, 985
TseI GCWGC 4 cut(s) 130, 623, 754, 856
Tsp45I GTSAC 2 cut(s) 583, 985
TspDTI ATGAA 4 cut(s) 225, 266, 384, 872
TspRI CASTG 4 cut(s) 123, 171, 642, 654
Vha464I CTTAAG 1 cut(s) 89
XapI RAATTY 3 cut(s) 154, 372, 959
XspI CTAG 1 cut(s) 581
ZrmI AGTACT 1 cut(s) 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.