Prupe.7G211900_v2.0.a1

Fanconi Anaemia group E protein FANCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0014432
Physical Location & Seq
Forward (+)
19337503 .. 19339465
1963 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G211900.1

Sequence Viewer

Length: 1491 bp
ATGGAGCAATGGGTCCCGCTCTTCGACATCTTCTTGACCTCCCCAACTCCCGAGTCCGAAGCGTCTACATGGTTAAACCAATCTTTCAGTGCCTCATCGTCAACCTCGACCCCGATTACCACAGGCTCTTTCCTCTCGTTGCTAATGAAGCCTTTGGATTCGATTGTCGTCGATGAGTCTTCTTCTTCATCTTCGGCTTGGCCTCCGTGTACAAATAGGGTGATGTTTATACAGACTCTACCGAACATGGTTCAGTCGCGGGTTCTGTCATTTCTTGGTTTTGAACGTCAAAGGTTTTCAAGCAGCGATTTGGCTAAGCTGGCCAGGACCGTTTTGAGTGGAAGTCAGGAGCTTGACTTTTGGGTACATAGGGCTGCACGCAATCTGCTCGATGTAGTGTCTGAGTCAAGTTACGAGTGGATTTCTTGCTTGAGTTTGGATTCTGGGGAGGATGAGTTTGAGTCCTTGCCGGGTTGGCTTAAGGATTCCGCTGCTTCCAGTGACTTGGTTCTACCATGGCTTCCTATATCGCCAGAAGAATTGGATTGGAGGACAGTGAATGGTAATTATGAAAATAACTATGGCTCATTGAGTCAAGTTGGAGAGGGTGAAGATGAGGATATGAATGATGTTCTGGAGGAAATGAATATTGATAATCCAGAAAGTGTTCATCTTGAACCTGAAATTAAAAAAAGGGCAGTAAGTTTGAAAGCTTGGGTTGTGGATTTTCAATCAACTTCTAAAACTGTTGGATTAGCAAAAGAAATTCGCGAACTTTGCTTAGAAAAAGGAGGAGATTCTTTCACAGTTTTGGGTCTGATTGAACCTTGGTTAGCTGATGATGAGACTGCTTCAATTCTATTATCTCATCTAACAAGTGGAAGTGAAGAAGAGCTTACTTGGCCAAGCCAGGTTCTGTGCTCGATCATGCTTCCCAAGTTGTTGGCCCTTGAGGAACCAGCTTCTCGTGTGCTAGTGACTGCAACAGTAGAGTACTGCAAGTGTCATCAAAGGGCCAGTGAGTATGCACTCTTATTTCCACTAATTCTTCGACGGGATGGCATCAACAACCCCATATATGATGTGATCACGAGGATCATCAAGGAAAGCTTGCACCCAGCTCATGTTGCTTCTTTCTGTCAGAAGCTGCTGTGTGGACAAAAAGATGAGAGGAAAGTCATTTGTCTTCCTTGCCATCAATATCTGATAACTGATAAAATGGTATGGACAGAATCATTTTTTAACCTGCTCCAAAGCATTTTGAATCATAATGTTCATTTATCACAGAATTCAGTTGACCAAATTATTTACCAGGTTCAGCAATTGGCTGAAAGATTTTCCAACTCTCTGAAATTTGGGAACTTTTTGTTATGTTTTGTCACCAAATGTTCTCCATTCTTGAAGCATCACAAGCTTATATTGACTAGAGTAGTTGAGCATAACAAAACGTTCTTAGCCAAATCTATATTAGGTAAATTGGCTGGCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 map03460
Pfam Domains
Protein Families
FA_FANCE

Protein Analysis

497

Amino Acids

55.76

Weight (kDa)

4.99

Isoelectric Point (pI)

48.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29560
fragaria_vesca FvH4_1g07200
malus_domestica MD02G1076500.v1.1 MD15G1205200.v1.1
prunus_persica Prupe.7G211900_v2.0.a1
pyrus_communis pycom02g06080 pycom15g18200
rosa_chinensis RchiOBHm_Chr2g0093101
rosa_laevigata RLG00000016368
rosa_multiflora Rmu_sc0006865.1_g000010
rosa_roxburghii Rroxscaffold_2G00148510
rosa_rugosa Rorug02G0032800
rosa_samantha Rh2AG078100 Rh2BG079400 Rh2CG081800 Rh2DG077100
rosa_wichuraiana Rw2G006820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1254
AccBSI CCGCTC 1 cut(s) 19
AccI GTMKAC 1 cut(s) 65
AccII CGCG 2 cut(s) 259, 771
AciI CCGC 3 cut(s) 17, 259, 489
AclI AACGTT 1 cut(s) 1448
AclWI GGATC 1 cut(s) 1103
AcoI YGGCCR 2 cut(s) 321, 902
AcsI RAATTY 3 cut(s) 765, 1288, 1352
AfaI GTAC 3 cut(s) 211, 366, 995
AflII CTTAAG 1 cut(s) 479
AgsI TTSAA 9 cut(s) 284, 300, 677, 709, 731, 824, 855, 1264, 1402
AjnI CCWGG 3 cut(s) 323, 909, 1311
Alw21I GWGCWC 1 cut(s) 923
Alw26I GTCTC 1 cut(s) 839
AlwI GGATC 1 cut(s) 1103
AlwNI CAGNNNCTG 2 cut(s) 916, 1147
Ama87I CYCGRG 1 cut(s) 50
AoxI GGCC 5 cut(s) 200, 321, 902, 945, 1014
ApeKI GCWGC 4 cut(s) 303, 374, 491, 1147
ApoI RAATTY 3 cut(s) 765, 1288, 1352
Asp700I GAANNNNTTC 1 cut(s) 666
AspS9I GGNCC 4 cut(s) 13, 327, 946, 1014
AsuC2I CCSGG 1 cut(s) 471
AsuHPI GGTGA 3 cut(s) 232, 620, 1372
AvaI CYCGRG 1 cut(s) 50
AvaII GGWCC 2 cut(s) 13, 327
BalI TGGCCA 2 cut(s) 323, 904
BauI CACGAG 2 cut(s) 966, 1090
BbsI GAAGAC 2 cut(s) 171, 1178
Bbv12I GWGCWC 1 cut(s) 923
BbvI GCAGC 4 cut(s) 315, 361, 478, 1134
BccI CCATC 2 cut(s) 1052, 1203
BcgI CGANNNNNNTGC 2 cut(s) 370, 404
BciT130I CCWGG 3 cut(s) 325, 911, 1313
BclI TGATCA 1 cut(s) 1086
BcnI CCSGG 1 cut(s) 471
BcoDI GTCTC 1 cut(s) 839
BfaI CTAG 2 cut(s) 974, 1425
BfrI CTTAAG 1 cut(s) 479
BfuAI ACCTGC 1 cut(s) 1254
BglI GCCNNNNNGGC 1 cut(s) 475
BisI GCNGC 4 cut(s) 304, 375, 492, 1148
BlpI GCTNAGC 1 cut(s) 315
BlsI GCNGC 4 cut(s) 305, 376, 493, 1149
BmcAI AGTACT 1 cut(s) 995
Bme1390I CCNGG 4 cut(s) 325, 471, 911, 1313
Bme18I GGWCC 2 cut(s) 13, 327
BmeT110I CYCGRG 1 cut(s) 50
BmgT120I GGNCC 4 cut(s) 13, 327, 946, 1014
BmiI GGNNCC 3 cut(s) 14, 15, 957
BmrFI CCNGG 4 cut(s) 325, 471, 911, 1313
BmsI GCATC 2 cut(s) 1071, 1414
BpiI GAAGAC 2 cut(s) 171, 1178
BpmI CTGGAG 1 cut(s) 656
Bpu1102I GCTNAGC 1 cut(s) 315
BpuEI CTTGAG 2 cut(s) 451, 971
BpuMI CCSGG 1 cut(s) 471
BsaJI CCNNGG 2 cut(s) 515, 827
BsaXI ACNNNNNCTCC 2 cut(s) 440, 470
Bse1I ACTGG 2 cut(s) 498, 1017
Bse3DI GCAATG 1 cut(s) 14
BseBI CCWGG 3 cut(s) 325, 911, 1313
BseDI CCNNGG 2 cut(s) 515, 827
BseGI GGATG 2 cut(s) 457, 1063
BseMI GCAATG 1 cut(s) 14
BseMII CTCAG 1 cut(s) 393
BseNI ACTGG 2 cut(s) 498, 1017
BseRI GAGGAG 1 cut(s) 807
BseXI GCAGC 4 cut(s) 315, 361, 478, 1134
BseYI CCCAGC 1 cut(s) 1117
BsgI GTGCAG 1 cut(s) 360
Bsh1236I CGCG 2 cut(s) 259, 771
BshFI GGCC 5 cut(s) 202, 323, 904, 947, 1016
BsiHKAI GWGCWC 1 cut(s) 923
BsiHKCI CYCGRG 1 cut(s) 50
BsiSI CCGG 1 cut(s) 470
BsmAI GTCTC 1 cut(s) 839
BsnI GGCC 5 cut(s) 202, 323, 904, 947, 1016
BsoBI CYCGRG 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 923
Bsp1407I TGTACA 1 cut(s) 209
Bsp143I GATC 3 cut(s) 924, 1086, 1095
Bsp1720I GCTNAGC 1 cut(s) 315
Bsp19I CCATGG 1 cut(s) 515
Bsp68I TCGCGA 1 cut(s) 771
BspACI CCGC 3 cut(s) 17, 259, 489
BspANI GGCC 5 cut(s) 202, 323, 904, 947, 1016
BspCNI CTCAG 1 cut(s) 394
BspFNI CGCG 2 cut(s) 259, 771
BspLI GGNNCC 3 cut(s) 14, 15, 957
BspMI ACCTGC 1 cut(s) 1254
BspPI GGATC 1 cut(s) 1103
BspQI GCTCTTC 2 cut(s) 26, 885
BspTI CTTAAG 1 cut(s) 479
BsrBI CCGCTC 1 cut(s) 19
BsrDI GCAATG 1 cut(s) 14
BsrGI TGTACA 1 cut(s) 209
BsrI ACTGG 2 cut(s) 498, 1017
BssECI CCNNGG 2 cut(s) 515, 827
BssMI GATC 3 cut(s) 924, 1086, 1095
BssSI CACGAG 2 cut(s) 966, 1090
BssT1I CCWWGG 2 cut(s) 515, 827
Bst2BI CACGAG 2 cut(s) 966, 1090
Bst2UI CCWGG 3 cut(s) 325, 911, 1313
Bst4CI ACNGT 5 cut(s) 331, 556, 748, 808, 988
Bst6I CTCTTC 2 cut(s) 26, 885
BstAFI CTTAAG 1 cut(s) 479
BstAUI TGTACA 1 cut(s) 209
BstC8I GCNNGC 4 cut(s) 321, 379, 1112, 1483
BstDEI CTNAG 4 cut(s) 315, 402, 781, 1453
BstDSI CCRYGG 1 cut(s) 515
BstF5I GGATG 2 cut(s) 457, 1063
BstFNI CGCG 2 cut(s) 259, 771
BstKTI GATC 3 cut(s) 927, 1089, 1098
BstMAI GTCTC 1 cut(s) 839
BstMBI GATC 3 cut(s) 924, 1086, 1095
BstMWI GCNNNNNNNGC 7 cut(s) 148, 320, 475, 777, 901, 1127, 1411
BstNI CCWGG 3 cut(s) 325, 911, 1313
BstSCI CCNGG 4 cut(s) 323, 469, 909, 1311
BstUI CGCG 2 cut(s) 259, 771
BstV1I GCAGC 4 cut(s) 315, 361, 478, 1134
BstV2I GAAGAC 2 cut(s) 171, 1178
BstXI CCANNNNNNTGG 2 cut(s) 505, 943
BsuRI GGCC 5 cut(s) 202, 323, 904, 947, 1016
BtgI CCRYGG 1 cut(s) 515
BtsCI GGATG 2 cut(s) 457, 1063
BtsIMutI CAGTG 4 cut(s) 94, 505, 561, 1024
BtuMI TCGCGA 1 cut(s) 771
BveI ACCTGC 1 cut(s) 1254
Cac8I GCNNGC 4 cut(s) 321, 379, 1112, 1483
CaiI CAGNNNCTG 2 cut(s) 916, 1147
Cfr13I GGNCC 4 cut(s) 13, 327, 946, 1014
CseI GACGC 1 cut(s) 51
CsiI ACCWGGT 1 cut(s) 1311
Csp6I GTAC 3 cut(s) 210, 365, 994
CviAII CATG 5 cut(s) 69, 247, 516, 928, 1124
CviQI GTAC 3 cut(s) 210, 365, 994
DdeI CTNAG 4 cut(s) 315, 402, 781, 1453
DpnI GATC 3 cut(s) 926, 1088, 1097
DpnII GATC 3 cut(s) 924, 1086, 1095
EaeI YGGCCR 2 cut(s) 321, 902
Eam1104I CTCTTC 2 cut(s) 26, 885
EarI CTCTTC 2 cut(s) 26, 885
Eco130I CCWWGG 2 cut(s) 515, 827
Eco47I GGWCC 2 cut(s) 13, 327
Eco88I CYCGRG 1 cut(s) 50
EcoO109I RGGNCCY 1 cut(s) 13
EcoRI GAATTC 1 cut(s) 1288
EcoRII CCWGG 3 cut(s) 323, 909, 1311
EcoT14I CCWWGG 2 cut(s) 515, 827
ErhI CCWWGG 2 cut(s) 515, 827
FaeI CATG 5 cut(s) 72, 250, 519, 931, 1127
FalI AAGNNNNNCTT 4 cut(s) 879, 911, 1094, 1126
FatI CATG 5 cut(s) 68, 246, 515, 927, 1123
FauI CCCGC 2 cut(s) 24, 252
FbaI TGATCA 1 cut(s) 1086
FblI GTMKAC 1 cut(s) 65
Fnu4HI GCNGC 4 cut(s) 304, 375, 492, 1148
FokI GGATG 2 cut(s) 464, 1070
Fsp4HI GCNGC 4 cut(s) 304, 375, 492, 1148
FspBI CTAG 2 cut(s) 974, 1425
GluI GCNGC 4 cut(s) 304, 375, 492, 1148
GsaI CCCAGC 1 cut(s) 1121
GsuI CTGGAG 1 cut(s) 656
HaeIII GGCC 5 cut(s) 202, 323, 904, 947, 1016
HapII CCGG 1 cut(s) 470
HgaI GACGC 1 cut(s) 51
Hin1II CATG 5 cut(s) 72, 250, 519, 931, 1127
HincII GTYRAC 2 cut(s) 102, 1297
HindII GTYRAC 2 cut(s) 102, 1297
HindIII AAGCTT 3 cut(s) 711, 1108, 1412
HpaII CCGG 1 cut(s) 470
HphI GGTGA 3 cut(s) 232, 620, 1372
Hpy166II GTNNAC 5 cut(s) 66, 102, 210, 1157, 1297
Hpy188I TCNGA 6 cut(s) 58, 403, 819, 1143, 1206, 1350
Hpy188III TCNNGA 9 cut(s) 34, 50, 347, 635, 659, 674, 770, 1090, 1399
Hpy8I GTNNAC 5 cut(s) 66, 102, 210, 1157, 1297
Hpy99I CGWCG 2 cut(s) 173, 1056
HpyCH4III ACNGT 5 cut(s) 331, 556, 748, 808, 988
HpyCH4IV ACGT 2 cut(s) 286, 1448
HpyCH4V TGCA 5 cut(s) 377, 983, 999, 1028, 1114
HpyF10VI GCNNNNNNNGC 7 cut(s) 148, 320, 475, 777, 901, 1127, 1411
HpyF3I CTNAG 4 cut(s) 315, 402, 781, 1453
HpySE526I ACGT 2 cut(s) 286, 1448
Hsp92II CATG 5 cut(s) 72, 250, 519, 931, 1127
KflI GGGWCCC 1 cut(s) 13
Ksp22I TGATCA 1 cut(s) 1086
Kzo9I GATC 3 cut(s) 924, 1086, 1095
LguI GCTCTTC 2 cut(s) 26, 885
LmnI GCTCC 3 cut(s) 4, 349, 1254
Lsp1109I GCAGC 4 cut(s) 315, 361, 478, 1134
LweI GCATC 2 cut(s) 1071, 1414
MabI ACCWGGT 1 cut(s) 1311
MaeI CTAG 2 cut(s) 974, 1425
MaeII ACGT 2 cut(s) 286, 1448
MaeIII GTNAC 4 cut(s) 410, 500, 976, 1378
MalI GATC 3 cut(s) 926, 1088, 1097
MbiI CCGCTC 1 cut(s) 19
MboI GATC 3 cut(s) 924, 1086, 1095
MfeI CAATTG 1 cut(s) 1322
MhlI GDGCHC 1 cut(s) 923
MlsI TGGCCA 2 cut(s) 323, 904
MluNI TGGCCA 2 cut(s) 323, 904
MlyI GAGTC 6 cut(s) 62, 185, 229, 413, 470, 601
MmeI TCCRAC 3 cut(s) 580, 730, 1365
Mox20I TGGCCA 2 cut(s) 323, 904
MroXI GAANNNNTTC 1 cut(s) 666
MscI TGGCCA 2 cut(s) 323, 904
MseI TTAA 4 cut(s) 74, 480, 687, 1242
Msp20I TGGCCA 2 cut(s) 323, 904
MspA1I CMGCKG 1 cut(s) 491
MspCI CTTAAG 1 cut(s) 479
MspI CCGG 1 cut(s) 470
MspR9I CCNGG 4 cut(s) 325, 471, 911, 1313
MunI CAATTG 1 cut(s) 1322
MvaI CCWGG 3 cut(s) 325, 911, 1313
MvnI CGCG 2 cut(s) 259, 771
MwoI GCNNNNNNNGC 7 cut(s) 148, 320, 475, 777, 901, 1127, 1411
NciI CCSGG 1 cut(s) 471
NcoI CCATGG 1 cut(s) 515
NdeII GATC 3 cut(s) 924, 1086, 1095
NlaIII CATG 5 cut(s) 72, 250, 519, 931, 1127
NlaIV GGNNCC 3 cut(s) 14, 15, 957
NmuCI GTSAC 3 cut(s) 500, 976, 1378
NruI TCGCGA 1 cut(s) 771
PciSI GCTCTTC 2 cut(s) 26, 885
PcsI WCGNNNNNNNCGW 1 cut(s) 104
PdmI GAANNNNTTC 1 cut(s) 666
PfeI GAWTC 6 cut(s) 158, 440, 485, 797, 1232, 1264
PkrI GCNGC 4 cut(s) 305, 376, 493, 1149
PleI GAGTC 6 cut(s) 61, 184, 229, 412, 469, 600
PpsI GAGTC 6 cut(s) 61, 184, 229, 412, 469, 600
PpuMI RGGWCCY 1 cut(s) 13
Psp1406I AACGTT 1 cut(s) 1448
Psp5II RGGWCCY 1 cut(s) 13
Psp6I CCWGG 3 cut(s) 323, 909, 1311
PspFI CCCAGC 1 cut(s) 1117
PspGI CCWGG 3 cut(s) 323, 909, 1311
PspN4I GGNNCC 3 cut(s) 14, 15, 957
PspPI GGNCC 4 cut(s) 13, 327, 946, 1014
PspPPI RGGWCCY 1 cut(s) 13
PstNI CAGNNNCTG 2 cut(s) 916, 1147
RruI TCGCGA 1 cut(s) 771
RsaI GTAC 3 cut(s) 211, 366, 995
RsaNI GTAC 3 cut(s) 210, 365, 994
SapI GCTCTTC 2 cut(s) 26, 885
SaqAI TTAA 4 cut(s) 74, 480, 687, 1242
SatI GCNGC 4 cut(s) 304, 375, 492, 1148
Sau3AI GATC 3 cut(s) 924, 1086, 1095
Sau96I GGNCC 4 cut(s) 13, 327, 946, 1014
ScaI AGTACT 1 cut(s) 995
SchI GAGTC 6 cut(s) 62, 185, 229, 413, 470, 601
ScrFI CCNGG 4 cut(s) 325, 471, 911, 1313
SduI GDGCHC 1 cut(s) 923
SexAI ACCWGGT 1 cut(s) 1311
SfaNI GCATC 2 cut(s) 1071, 1414
SinI GGWCC 2 cut(s) 13, 327
SmlI CTYRAG 3 cut(s) 430, 479, 950
SmoI CTYRAG 3 cut(s) 430, 479, 950
SsiI CCGC 3 cut(s) 17, 259, 489
SspI AATATT 1 cut(s) 649
SspMI CTAG 2 cut(s) 974, 1425
StyD4I CCNGG 4 cut(s) 323, 469, 909, 1311
StyI CCWWGG 2 cut(s) 515, 827
TaaI ACNGT 5 cut(s) 331, 556, 748, 808, 988
TaiI ACGT 2 cut(s) 289, 1451
TaqI TCGA 7 cut(s) 24, 107, 161, 171, 390, 923, 1051
TatI WGTACW 2 cut(s) 209, 993
TfiI GAWTC 6 cut(s) 158, 440, 485, 797, 1232, 1264
Tru1I TTAA 4 cut(s) 74, 480, 687, 1242
Tru9I TTAA 4 cut(s) 74, 480, 687, 1242
TscAI CASTG 4 cut(s) 94, 505, 561, 1024
TseFI GTSAC 3 cut(s) 500, 976, 1378
TseI GCWGC 4 cut(s) 303, 374, 491, 1147
Tsp45I GTSAC 3 cut(s) 500, 976, 1378
TspDTI ATGAA 7 cut(s) 161, 177, 585, 638, 659, 659, 1265
TspGWI ACGGA 1 cut(s) 195
TspRI CASTG 4 cut(s) 94, 505, 561, 1024
Vha464I CTTAAG 1 cut(s) 479
VpaK11BI GGWCC 2 cut(s) 13, 327
XapI RAATTY 3 cut(s) 765, 1288, 1352
XmiI GTMKAC 1 cut(s) 65
XmnI GAANNNNTTC 1 cut(s) 666
XspI CTAG 2 cut(s) 974, 1425
ZrmI AGTACT 1 cut(s) 995
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.