MD02G1076500.v1.1

Fanconi Anaemia group E protein FANCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0014432
Physical Location & Seq
Reverse (-)
6055123 .. 6056860
1738 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1076500.v1.1.491

Sequence Viewer

Length: 1491 bp
ATGGAGCAATGGGTCCCACTCTTCGACATCTTCTTGACCTCCCCGACTCCCGAATCCGAAGCTTCTGCGTGGCTGAACCAATCTTTCAGCGCCTCATCGTCATCGGCGACCCCAATCACCACCGGCTCCTTCCTCTCGTTGCTGATGAAACCTCTGGACTCGATCGTCGCCGACGATTCTCTTCCCTCGTCTTCGGCTTGGCCTCCAAGCACAGATAGGGTGATGTTTATACAGACTCTGCCGAACATGGTTCAGTCGCGGATTCTTTCGTTTCTGGGTTTGGAGCGTCAGAGGTTTTGCGGTCGGGACTTGGCGAGGCTGGCGAGGACTGTGTTGGATGGAAGTCAGCAGCTTGATTTTTGGGTTCAGAGGGCTGCACGCAATCTGCTCGATGGAATGTCCGATTCAAGTTATGAGTGGATTAGTGGCTTGAGTTTGGAATTCGAGGAGGATGAATTTGAATCCTTGCCGGGTTGTCTTAAGGATTCCGGGGCTTTTGGTGAGTTGGTTCTACCTTGGCTTCCTGTATCGCCTGAGGAATTGAATTCGAGGACAGTAACTGGTAATTTTGAAAACAATGATGGGTCGTCGAGTCAAGTTGAAGAGGATGAAGATGTGGATATGAATGATGTTTTGGAGGAAATGAATATTGATGATCCAATTAGTGTTCATCTTGAGCCTGAAATTCAAAAGATGGCAGTTAGTTTGAAAGCACAGGTTGCAGATTTTCAATCAACTTCTAAAACTGTAGGCTTAGCGAATGAAATTCGCAAACTTTGCTTAGACAAAAGAGGAGATTCTTTGACGATTTTGGGTCTGATTGAACCATGGTTAGCTGATGACGAGACTGCTTCAATTCTACTTTCTCATCTAACAAGCGGAAGTGAAGAAGAGCTTGCTTGGGCAAGCCAGGTTCTGTGCTCGGTCATCCTTCCCAAATTGTTGGTACTCGAGGAACCTGCTTCTCGAGTGCTAGTGACTGCAACAGTAGATTACTGCAAACTCCATCAAAGGGCCTGTGAATATACACTCTTATTTCCACTGATTCTTCGACAGGATGGCATCAATAATCCCATATGTGATGTGATCGCGAGGATCATCAAGGAAAGTTTGCACCCGGCTCATGCTTCTTCTTTCTGTCAGAAGCTCCTGTGCGGAGAAAAAGATGAGAGGAGAGTCATCTGTCTCCCTTGCCACCGATATCTGATAACCGATAAAATGGTATGGACAGAATCATTGTTTACCCTGCTCGAAAGCATTTTGAATCATAATGTTCATTTAACACAGAGTTCAGTTGATCATATTGTTTACCAGGCTCAGCAATTGGCCGAAATATTTTCGAATTCTCTGAAATTTGGGAACTTTTTGTTATGCTTAGTCAACAAATGTTCTCCGTTCTTGAAGCCTCACAAGCTTACATTGACTGAAGTAGTCGAGCAAAACAAAACCTTTTTAGCCAGATCAATATTAGGAAAATTGGCTGGATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 map03460
Pfam Domains
Protein Families
FA_FANCE

Protein Analysis

497

Amino Acids

55.28

Weight (kDa)

4.69

Isoelectric Point (pI)

52.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29560
fragaria_vesca FvH4_1g07200
malus_domestica MD02G1076500.v1.1 MD15G1205200.v1.1
prunus_persica Prupe.7G211900_v2.0.a1
pyrus_communis pycom02g06080 pycom15g18200
rosa_chinensis RchiOBHm_Chr2g0093101
rosa_laevigata RLG00000016368
rosa_multiflora Rmu_sc0006865.1_g000010
rosa_roxburghii Rroxscaffold_2G00148510
rosa_rugosa Rorug02G0032800
rosa_samantha Rh2AG078100 Rh2BG079400 Rh2CG081800 Rh2DG077100
rosa_wichuraiana Rw2G006820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 164
Acc36I ACCTGC 1 cut(s) 967
AccII CGCG 2 cut(s) 259, 1091
AciI CCGC 4 cut(s) 259, 300, 879, 1155
AclWI GGATC 2 cut(s) 650, 1103
AcoI YGGCCR 1 cut(s) 1326
AcsI RAATTY 7 cut(s) 440, 455, 544, 684, 765, 1342, 1352
AcuI CTGAAG 1 cut(s) 1446
AfaI GTAC 1 cut(s) 948
AfiI CCNNNNNNNGG 1 cut(s) 1012
AflII CTTAAG 1 cut(s) 479
AjnI CCWGG 2 cut(s) 909, 1311
AjuI GAANNNNNNNTTGG 2 cut(s) 617, 649
AluBI AGCT 6 cut(s) 62, 352, 836, 895, 1147, 1414
AluI AGCT 6 cut(s) 62, 352, 836, 895, 1147, 1414
Alw21I GWGCWC 1 cut(s) 923
Alw26I GTCTC 2 cut(s) 839, 1190
AlwI GGATC 2 cut(s) 650, 1103
AlwNI CAGNNNCTG 3 cut(s) 238, 560, 916
Ama87I CYCGRG 2 cut(s) 950, 966
AoxI GGCC 3 cut(s) 200, 1014, 1326
ApeKI GCWGC 2 cut(s) 349, 374
ApoI RAATTY 7 cut(s) 440, 455, 544, 684, 765, 1342, 1352
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 2 cut(s) 13, 1014
AsuC2I CCSGG 3 cut(s) 471, 490, 1118
AsuHPI GGTGA 3 cut(s) 109, 232, 512
AsuII TTCGAA 1 cut(s) 1340
AvaI CYCGRG 2 cut(s) 950, 966
AvaII GGWCC 1 cut(s) 13
AxyI CCTNAGG 1 cut(s) 534
BbsI GAAGAC 1 cut(s) 183
Bbv12I GWGCWC 1 cut(s) 923
BbvI GCAGC 2 cut(s) 361, 361
BccI CCATC 6 cut(s) 332, 386, 575, 688, 1014, 1052
BcgI CGANNNNNNTGC 6 cut(s) 47, 81, 370, 404, 941, 975
BciT130I CCWGG 2 cut(s) 911, 1313
BclI TGATCA 1 cut(s) 1297
BcnI CCSGG 3 cut(s) 471, 490, 1118
BcoDI GTCTC 2 cut(s) 839, 1190
BfaI CTAG 1 cut(s) 974
BfmI CTRYAG 1 cut(s) 747
BfoI RGCGCY 1 cut(s) 93
BfrI CTTAAG 1 cut(s) 479
BfuAI ACCTGC 1 cut(s) 967
BisI GCNGC 2 cut(s) 350, 375
BlpI GCTNAGC 2 cut(s) 754, 1317
BlsI GCNGC 2 cut(s) 351, 376
Bme1390I CCNGG 5 cut(s) 471, 490, 911, 1118, 1313
Bme18I GGWCC 1 cut(s) 13
BmeT110I CYCGRG 2 cut(s) 950, 966
BmgT120I GGNCC 2 cut(s) 13, 1014
BmiI GGNNCC 4 cut(s) 14, 15, 127, 957
BmrFI CCNGG 5 cut(s) 471, 490, 911, 1118, 1313
BmsI GCATC 1 cut(s) 1071
BpiI GAAGAC 1 cut(s) 183
Bpu1102I GCTNAGC 2 cut(s) 754, 1317
Bpu14I TTCGAA 1 cut(s) 1340
BpuEI CTTGAG 2 cut(s) 451, 695
BpuMI CCSGG 3 cut(s) 471, 490, 1118
BsaJI CCNNGG 3 cut(s) 489, 515, 827
Bsc4I CCNNNNNNNGG 1 cut(s) 1012
Bse118I RCCGGY 1 cut(s) 122
Bse1I ACTGG 1 cut(s) 565
Bse21I CCTNAGG 1 cut(s) 534
Bse3DI GCAATG 1 cut(s) 14
BseBI CCWGG 2 cut(s) 911, 1313
BseDI CCNNGG 3 cut(s) 489, 515, 827
BseGI GGATG 5 cut(s) 343, 457, 613, 927, 1063
BseLI CCNNNNNNNGG 1 cut(s) 1012
BseMI GCAATG 1 cut(s) 14
BseMII CTCAG 2 cut(s) 525, 1331
BseNI ACTGG 1 cut(s) 565
BseRI GAGGAG 3 cut(s) 461, 807, 1186
BseXI GCAGC 2 cut(s) 361, 361
BsgI GTGCAG 1 cut(s) 360
Bsh1236I CGCG 2 cut(s) 259, 1091
Bsh1285I CGRYCG 2 cut(s) 165, 304
BshFI GGCC 3 cut(s) 202, 1016, 1328
BsiEI CGRYCG 2 cut(s) 165, 304
BsiHKAI GWGCWC 1 cut(s) 923
BsiHKCI CYCGRG 2 cut(s) 950, 966
BsiSI CCGG 4 cut(s) 123, 470, 489, 1118
BslFI GGGAC 1 cut(s) 320
BslI CCNNNNNNNGG 1 cut(s) 1012
BsmAI GTCTC 2 cut(s) 839, 1190
BsmFI GGGAC 1 cut(s) 320
BsnI GGCC 3 cut(s) 202, 1016, 1328
BsoBI CYCGRG 2 cut(s) 950, 966
Bsp119I TTCGAA 1 cut(s) 1340
Bsp1286I GDGCHC 1 cut(s) 923
Bsp143I GATC 6 cut(s) 162, 655, 1086, 1095, 1297, 1460
Bsp1720I GCTNAGC 2 cut(s) 754, 1317
Bsp19I CCATGG 1 cut(s) 827
Bsp68I TCGCGA 1 cut(s) 1091
BspACI CCGC 4 cut(s) 259, 300, 879, 1155
BspANI GGCC 3 cut(s) 202, 1016, 1328
BspCNI CTCAG 2 cut(s) 526, 1330
BspFNI CGCG 2 cut(s) 259, 1091
BspLI GGNNCC 4 cut(s) 14, 15, 127, 957
BspMI ACCTGC 1 cut(s) 967
BspPI GGATC 2 cut(s) 650, 1103
BspQI GCTCTTC 1 cut(s) 885
BspT104I TTCGAA 1 cut(s) 1340
BspTI CTTAAG 1 cut(s) 479
BsrDI GCAATG 1 cut(s) 14
BsrFI RCCGGY 1 cut(s) 122
BsrI ACTGG 1 cut(s) 565
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 3 cut(s) 489, 515, 827
BssMI GATC 6 cut(s) 162, 655, 1086, 1095, 1297, 1460
BssT1I CCWWGG 2 cut(s) 515, 827
Bst2UI CCWGG 2 cut(s) 911, 1313
Bst4CI ACNGT 4 cut(s) 331, 556, 748, 988
Bst6I CTCTTC 4 cut(s) 26, 186, 597, 885
BstAFI CTTAAG 1 cut(s) 479
BstAPI GCANNNNNTGC 2 cut(s) 719, 777
BstBI TTCGAA 1 cut(s) 1340
BstC8I GCNNGC 4 cut(s) 321, 379, 897, 907
BstDEI CTNAG 5 cut(s) 534, 754, 781, 1317, 1375
BstDSI CCRYGG 1 cut(s) 827
BstF5I GGATG 5 cut(s) 343, 457, 613, 927, 1063
BstFNI CGCG 2 cut(s) 259, 1091
BstH2I RGCGCY 1 cut(s) 93
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 6 cut(s) 165, 658, 1089, 1098, 1300, 1463
BstMAI GTCTC 2 cut(s) 839, 1190
BstMBI GATC 6 cut(s) 162, 655, 1086, 1095, 1297, 1460
BstMCI CGRYCG 2 cut(s) 165, 304
BstMWI GCNNNNNNNGC 4 cut(s) 320, 719, 777, 1411
BstNI CCWGG 2 cut(s) 911, 1313
BstSCI CCNGG 5 cut(s) 469, 488, 909, 1116, 1311
BstSFI CTRYAG 1 cut(s) 747
BstUI CGCG 2 cut(s) 259, 1091
BstV1I GCAGC 2 cut(s) 361, 361
BstV2I GAAGAC 1 cut(s) 183
BstXI CCANNNNNNTGG 1 cut(s) 943
Bsu36I CCTNAGG 1 cut(s) 534
BsuRI GGCC 3 cut(s) 202, 1016, 1328
BtgI CCRYGG 1 cut(s) 827
BtsCI GGATG 5 cut(s) 343, 457, 613, 927, 1063
BtsIMutI CAGTG 1 cut(s) 1040
BtuMI TCGCGA 1 cut(s) 1091
BveI ACCTGC 1 cut(s) 967
Cac8I GCNNGC 4 cut(s) 321, 379, 897, 907
CaiI CAGNNNCTG 3 cut(s) 238, 560, 916
CfoI GCGC 1 cut(s) 92
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 2 cut(s) 13, 1014
CseI GACGC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 947
CviAII CATG 3 cut(s) 247, 828, 1124
CviQI GTAC 1 cut(s) 947
DdeI CTNAG 5 cut(s) 534, 754, 781, 1317, 1375
DpnI GATC 6 cut(s) 164, 657, 1088, 1097, 1299, 1462
DpnII GATC 6 cut(s) 162, 655, 1086, 1095, 1297, 1460
DrdI GACNNNNNNGTC 1 cut(s) 164
DseDI GACNNNNNNGTC 1 cut(s) 164
EaeI YGGCCR 1 cut(s) 1326
Eam1104I CTCTTC 4 cut(s) 26, 186, 597, 885
EarI CTCTTC 4 cut(s) 26, 186, 597, 885
Eco130I CCWWGG 2 cut(s) 515, 827
Eco32I GATATC 1 cut(s) 1202
Eco47I GGWCC 1 cut(s) 13
Eco57I CTGAAG 1 cut(s) 1446
Eco81I CCTNAGG 1 cut(s) 534
Eco88I CYCGRG 2 cut(s) 950, 966
EcoO109I RGGNCCY 2 cut(s) 13, 1014
EcoRI GAATTC 3 cut(s) 440, 544, 1342
EcoRII CCWGG 2 cut(s) 909, 1311
EcoRV GATATC 1 cut(s) 1202
EcoT14I CCWWGG 2 cut(s) 515, 827
ErhI CCWWGG 2 cut(s) 515, 827
FaeI CATG 3 cut(s) 250, 831, 1127
FalI AAGNNNNNCTT 2 cut(s) 879, 911
FaqI GGGAC 1 cut(s) 320
FatI CATG 3 cut(s) 246, 827, 1123
FauNDI CATATG 1 cut(s) 1076
FbaI TGATCA 1 cut(s) 1297
Fnu4HI GCNGC 2 cut(s) 350, 375
FokI GGATG 5 cut(s) 350, 464, 620, 914, 1070
Fsp4HI GCNGC 2 cut(s) 350, 375
FspBI CTAG 1 cut(s) 974
GlaI GCGC 1 cut(s) 91
GluI GCNGC 2 cut(s) 350, 375
HaeII RGCGCY 1 cut(s) 93
HaeIII GGCC 3 cut(s) 202, 1016, 1328
HapII CCGG 4 cut(s) 123, 470, 489, 1118
HgaI GACGC 1 cut(s) 275
HhaI GCGC 1 cut(s) 92
Hin1II CATG 3 cut(s) 250, 831, 1127
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HincII GTYRAC 1 cut(s) 1381
HindII GTYRAC 1 cut(s) 1381
HindIII AAGCTT 2 cut(s) 60, 1412
HpaII CCGG 4 cut(s) 123, 470, 489, 1118
HphI GGTGA 3 cut(s) 109, 232, 512
Hpy166II GTNNAC 3 cut(s) 1242, 1309, 1381
Hpy188I TCNGA 8 cut(s) 58, 291, 369, 403, 819, 1143, 1206, 1350
Hpy188III TCNNGA 8 cut(s) 34, 50, 155, 305, 674, 966, 1090, 1399
Hpy8I GTNNAC 3 cut(s) 1242, 1309, 1381
Hpy99I CGWCG 3 cut(s) 170, 176, 592
HpyAV CCTTC 2 cut(s) 139, 941
HpyCH4III ACNGT 4 cut(s) 331, 556, 748, 988
HpyCH4V TGCA 5 cut(s) 377, 722, 983, 999, 1114
HpyF10VI GCNNNNNNNGC 4 cut(s) 320, 719, 777, 1411
HpyF3I CTNAG 5 cut(s) 534, 754, 781, 1317, 1375
Hsp92II CATG 3 cut(s) 250, 831, 1127
HspAI GCGC 1 cut(s) 90
KflI GGGWCCC 1 cut(s) 13
Ksp22I TGATCA 1 cut(s) 1297
Kzo9I GATC 6 cut(s) 162, 655, 1086, 1095, 1297, 1460
LguI GCTCTTC 1 cut(s) 885
LmnI GCTCC 4 cut(s) 4, 131, 283, 1152
Lsp1109I GCAGC 2 cut(s) 361, 361
LweI GCATC 1 cut(s) 1071
MaeI CTAG 1 cut(s) 974
MaeIII GTNAC 2 cut(s) 556, 976
MalI GATC 6 cut(s) 164, 657, 1088, 1097, 1299, 1462
MboI GATC 6 cut(s) 162, 655, 1086, 1095, 1297, 1460
MfeI CAATTG 1 cut(s) 1322
MhlI GDGCHC 1 cut(s) 923
MlyI GAGTC 5 cut(s) 40, 152, 229, 601, 1185
MmeI TCCRAC 1 cut(s) 315
MseI TTAA 2 cut(s) 480, 1280
MspCI CTTAAG 1 cut(s) 479
MspI CCGG 4 cut(s) 123, 470, 489, 1118
MspR9I CCNGG 5 cut(s) 471, 490, 911, 1118, 1313
MunI CAATTG 1 cut(s) 1322
MvaI CCWGG 2 cut(s) 911, 1313
MvnI CGCG 2 cut(s) 259, 1091
MwoI GCNNNNNNNGC 4 cut(s) 320, 719, 777, 1411
NciI CCSGG 3 cut(s) 471, 490, 1118
NcoI CCATGG 1 cut(s) 827
NdeI CATATG 1 cut(s) 1076
NdeII GATC 6 cut(s) 162, 655, 1086, 1095, 1297, 1460
NlaIII CATG 3 cut(s) 250, 831, 1127
NlaIV GGNNCC 4 cut(s) 14, 15, 127, 957
NmuCI GTSAC 1 cut(s) 976
NruI TCGCGA 1 cut(s) 1091
NspV TTCGAA 1 cut(s) 1340
PaeR7I CTCGAG 2 cut(s) 950, 966
PciSI GCTCTTC 1 cut(s) 885
PcsI WCGNNNNNNNCGW 2 cut(s) 104, 171
PkrI GCNGC 2 cut(s) 351, 376
Ple19I CGATCG 1 cut(s) 165
PleI GAGTC 5 cut(s) 40, 152, 229, 600, 1184
PpsI GAGTC 5 cut(s) 40, 152, 229, 600, 1184
PpuMI RGGWCCY 1 cut(s) 13
Psp5II RGGWCCY 1 cut(s) 13
Psp6I CCWGG 2 cut(s) 909, 1311
PspGI CCWGG 2 cut(s) 909, 1311
PspN4I GGNNCC 4 cut(s) 14, 15, 127, 957
PspPI GGNCC 2 cut(s) 13, 1014
PspPPI RGGWCCY 1 cut(s) 13
PspXI VCTCGAGB 1 cut(s) 950
PstNI CAGNNNCTG 3 cut(s) 238, 560, 916
PvuI CGATCG 1 cut(s) 165
RruI TCGCGA 1 cut(s) 1091
RsaI GTAC 1 cut(s) 948
RsaNI GTAC 1 cut(s) 947
SapI GCTCTTC 1 cut(s) 885
SaqAI TTAA 2 cut(s) 480, 1280
SatI GCNGC 2 cut(s) 350, 375
Sau3AI GATC 6 cut(s) 162, 655, 1086, 1095, 1297, 1460
Sau96I GGNCC 2 cut(s) 13, 1014
SchI GAGTC 5 cut(s) 40, 152, 229, 601, 1185
ScrFI CCNGG 5 cut(s) 471, 490, 911, 1118, 1313
SduI GDGCHC 1 cut(s) 923
SfaNI GCATC 1 cut(s) 1071
SfcI CTRYAG 1 cut(s) 747
Sfr274I CTCGAG 2 cut(s) 950, 966
SfuI TTCGAA 1 cut(s) 1340
SinI GGWCC 1 cut(s) 13
SlaI CTCGAG 2 cut(s) 950, 966
SmlI CTYRAG 5 cut(s) 430, 479, 674, 950, 966
SmoI CTYRAG 5 cut(s) 430, 479, 674, 950, 966
SsiI CCGC 4 cut(s) 259, 300, 879, 1155
SspI AATATT 3 cut(s) 649, 1335, 1467
SspMI CTAG 1 cut(s) 974
StyD4I CCNGG 5 cut(s) 469, 488, 909, 1116, 1311
StyI CCWWGG 2 cut(s) 515, 827
TaaI ACNGT 4 cut(s) 331, 556, 748, 988
TaqII GACCGA 1 cut(s) 913
Tru1I TTAA 2 cut(s) 480, 1280
Tru9I TTAA 2 cut(s) 480, 1280
TscAI CASTG 1 cut(s) 1047
TseFI GTSAC 1 cut(s) 976
TseI GCWGC 2 cut(s) 349, 374
Tsp45I GTSAC 1 cut(s) 976
TspDTI ATGAA 8 cut(s) 161, 468, 624, 638, 659, 659, 777, 1265
TspGWI ACGGA 1 cut(s) 1383
TspRI CASTG 1 cut(s) 1047
Vha464I CTTAAG 1 cut(s) 479
VpaK11BI GGWCC 1 cut(s) 13
XapI RAATTY 7 cut(s) 440, 455, 544, 684, 765, 1342, 1352
XhoI CTCGAG 2 cut(s) 950, 966
XspI CTAG 1 cut(s) 974
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.