Rroxscaffold_2G00148510

Fanconi Anaemia group E protein FANCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014432
Physical Location & Seq
Forward (+)
86178335 .. 86180023
1689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00148510.1

Sequence Viewer

Length: 1098 bp
ATGTCTGAGTCGAATTACGAGTGGATTTCCTGCTTGGGTTTGGATTCTGGGGAGAAGGAGGATGATTTTGAGTCGTTGCCGGACTGGCTTAGGGTGTCGGCGGCTGAGAGTGATTCAGTGATGCCATGGCTGCCTATATCGGCTGAGGAGTTGAATTCAGGGACAGTGAGTGGTGATGATGGTGGTTCGTTGAGTCAAGTTGGAGGGGATGAAGATGAGGATTTGGATATGGATGATGTTGTCGAGGAAATTAATATTGATTCTCCAAAAAGTGTTGATATTGAACCTGGAGTTAGAGAGAAGGCTATTAGTTTGAAAGAGCGGGTTTTGAGTTTTGAATCAACTTCGAAGACTGTGGGATTAGCGAATGAAATTCGTGAACTTTGCTTGGGCAAAGGAGGAGAATGTTTCGCGGTTTTGGGTCTGATTGAACCTTGGTTAGCTGATGATGAGGCTGCTTCAGTTCTACTTTCTCATCTGACAAGTGGAGGCGAGGAAGAGCTTACTTGGCCAAGCCAGGTTCTGTGCTCGATTGTCCTGCCCAAGTTGTTGGTTCTTGATGAACCAGCCTCGCGTGTGCTAGTGACTGCAACAGTAGAGTACTGCAGGCTACATCAAAGGGCTGCTGAGTATGCACTGTTGTTTCCACTGATTCTCCGACAGGAAGGCATCAACAATCCTATATATGATGTGATCACAAGAGTCATCAAGGAAAGCTTGCACCCGGCTCATGTCTCATCTTTCTGTCAGAAGCTGCTGTGTGGAGAAAAAGATGAGAGGAGAGTCATTTGTCTTCCTTGCCACAAATATTTGATAACTGATATGATGGTATGGACAGAATCATTGTTTAGCCTGCTGCAAAGCATTTTGAATCATAATGTTCATTTTACACAGAGTTCTGTTGACCATATAGTTTACCAGGTTCAGCAATTGGCTGAAACATTTTCTAACTCTCTGAAATTTGGGAACTTTTTGTTATGTTTAGTCACCAAATGCTCTCCATTGTTGAAGCGTCACAAGCTTATGTTGACTAAAGTAGTTGAGAAAAACAAAACATTCTTAGCTAAATCTATATTATGTAAAATAGCTGGCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 map03460
Pfam Domains
Protein Families
FA_FANCE

Protein Analysis

365

Amino Acids

40.53

Weight (kDa)

4.73

Isoelectric Point (pI)

51.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29560
fragaria_vesca FvH4_1g07200
malus_domestica MD02G1076500.v1.1 MD15G1205200.v1.1
prunus_persica Prupe.7G211900_v2.0.a1
pyrus_communis pycom02g06080 pycom15g18200
rosa_chinensis RchiOBHm_Chr2g0093101
rosa_laevigata RLG00000016368
rosa_multiflora Rmu_sc0006865.1_g000010
rosa_roxburghii Rroxscaffold_2G00148510
rosa_rugosa Rorug02G0032800
rosa_samantha Rh2AG078100 Rh2BG079400 Rh2CG081800 Rh2DG077100
rosa_wichuraiana Rw2G006820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 322
AccII CGCG 2 cut(s) 413, 574
AciI CCGC 3 cut(s) 101, 322, 413
AcoI YGGCCR 1 cut(s) 509
AcsI RAATTY 3 cut(s) 154, 372, 959
AcuI CTGAAG 1 cut(s) 444
AfaI GTAC 1 cut(s) 602
AgsI TTSAA 7 cut(s) 154, 284, 316, 338, 431, 871, 1009
AjnI CCWGG 3 cut(s) 286, 516, 918
AluBI AGCT 7 cut(s) 443, 502, 717, 754, 1021, 1064, 1088
AluI AGCT 7 cut(s) 443, 502, 717, 754, 1021, 1064, 1088
Alw21I GWGCWC 1 cut(s) 530
Alw26I GTCTC 1 cut(s) 739
AlwNI CAGNNNCTG 2 cut(s) 523, 754
AoxI GGCC 1 cut(s) 509
ApeKI GCWGC 5 cut(s) 130, 455, 623, 754, 856
ApoI RAATTY 3 cut(s) 154, 372, 959
AseI ATTAAT 1 cut(s) 252
AsuC2I CCSGG 1 cut(s) 725
AsuHPI GGTGA 2 cut(s) 185, 979
AsuII TTCGAA 1 cut(s) 347
BalI TGGCCA 1 cut(s) 511
BbsI GAAGAC 2 cut(s) 356, 785
Bbv12I GWGCWC 1 cut(s) 530
BbvCI CCTCAGC 1 cut(s) 144
BbvI GCAGC 5 cut(s) 117, 442, 610, 741, 843
BccI CCATC 2 cut(s) 173, 820
BcgI CGANNNNNNTGC 2 cut(s) 520, 554
BciT130I CCWGG 3 cut(s) 288, 518, 920
BclI TGATCA 1 cut(s) 693
BcnI CCSGG 1 cut(s) 725
BcoDI GTCTC 1 cut(s) 739
BfaI CTAG 1 cut(s) 581
BfmI CTRYAG 1 cut(s) 604
BglI GCCNNNNNGGC 1 cut(s) 85
BisI GCNGC 6 cut(s) 102, 131, 456, 624, 755, 857
BlsI GCNGC 6 cut(s) 103, 132, 457, 625, 756, 858
BmcAI AGTACT 1 cut(s) 602
Bme1390I CCNGG 4 cut(s) 288, 518, 725, 920
BmrFI CCNGG 4 cut(s) 288, 518, 725, 920
BmsI GCATC 2 cut(s) 111, 678
BpiI GAAGAC 2 cut(s) 356, 785
BpmI CTGGAG 1 cut(s) 309
Bpu10I CCTNAGC 2 cut(s) 89, 144
Bpu14I TTCGAA 1 cut(s) 347
BpuMI CCSGG 1 cut(s) 725
BsaJI CCNNGG 2 cut(s) 125, 434
BsaXI ACNNNNNCTCC 2 cut(s) 639, 669
Bse1I ACTGG 1 cut(s) 89
BseBI CCWGG 3 cut(s) 288, 518, 920
BseDI CCNNGG 2 cut(s) 125, 434
BseGI GGATG 3 cut(s) 67, 214, 238
BseMII CTCAG 3 cut(s) 96, 135, 618
BseNI ACTGG 1 cut(s) 89
BseRI GAGGAG 3 cut(s) 161, 414, 793
BseXI GCAGC 5 cut(s) 117, 442, 610, 741, 843
Bsh1236I CGCG 2 cut(s) 413, 574
BshFI GGCC 1 cut(s) 511
BsiHKAI GWGCWC 1 cut(s) 530
BsiSI CCGG 2 cut(s) 80, 725
BslFI GGGAC 1 cut(s) 175
BsmAI GTCTC 1 cut(s) 739
BsmFI GGGAC 1 cut(s) 175
BsnI GGCC 1 cut(s) 511
Bsp119I TTCGAA 1 cut(s) 347
Bsp1286I GDGCHC 1 cut(s) 530
Bsp143I GATC 1 cut(s) 693
Bsp19I CCATGG 1 cut(s) 125
BspACI CCGC 3 cut(s) 101, 322, 413
BspANI GGCC 1 cut(s) 511
BspCNI CTCAG 3 cut(s) 97, 136, 619
BspFNI CGCG 2 cut(s) 413, 574
BspMAI CTGCAG 1 cut(s) 608
BspQI GCTCTTC 1 cut(s) 492
BspT104I TTCGAA 1 cut(s) 347
BsrBI CCGCTC 1 cut(s) 322
BsrI ACTGG 1 cut(s) 89
BssECI CCNNGG 2 cut(s) 125, 434
BssMI GATC 1 cut(s) 693
BssT1I CCWWGG 2 cut(s) 125, 434
Bst2UI CCWGG 3 cut(s) 288, 518, 920
Bst4CI ACNGT 4 cut(s) 166, 355, 595, 639
Bst6I CTCTTC 1 cut(s) 492
BstBI TTCGAA 1 cut(s) 347
BstC8I GCNNGC 4 cut(s) 608, 719, 854, 1090
BstDEI CTNAG 6 cut(s) 6, 89, 105, 144, 627, 1060
BstDSI CCRYGG 1 cut(s) 125
BstF5I GGATG 3 cut(s) 67, 214, 238
BstFNI CGCG 2 cut(s) 413, 574
BstKTI GATC 1 cut(s) 696
BstMAI GTCTC 1 cut(s) 739
BstMBI GATC 1 cut(s) 693
BstMWI GCNNNNNNNGC 5 cut(s) 85, 130, 508, 632, 1018
BstNI CCWGG 3 cut(s) 288, 518, 920
BstSCI CCNGG 4 cut(s) 286, 516, 723, 918
BstSFI CTRYAG 1 cut(s) 604
BstUI CGCG 2 cut(s) 413, 574
BstV1I GCAGC 5 cut(s) 117, 442, 610, 741, 843
BstV2I GAAGAC 2 cut(s) 356, 785
BstXI CCANNNNNNTGG 1 cut(s) 550
BsuRI GGCC 1 cut(s) 511
BtgI CCRYGG 1 cut(s) 125
BtsCI GGATG 3 cut(s) 67, 214, 238
BtsIMutI CAGTG 4 cut(s) 123, 171, 635, 647
Cac8I GCNNGC 4 cut(s) 608, 719, 854, 1090
CaiI CAGNNNCTG 2 cut(s) 523, 754
CseI GACGC 1 cut(s) 1001
CsiI ACCWGGT 1 cut(s) 918
Csp6I GTAC 1 cut(s) 601
CviAII CATG 2 cut(s) 126, 731
CviQI GTAC 1 cut(s) 601
DdeI CTNAG 6 cut(s) 6, 89, 105, 144, 627, 1060
DpnI GATC 1 cut(s) 695
DpnII GATC 1 cut(s) 693
EaeI YGGCCR 1 cut(s) 509
Eam1104I CTCTTC 1 cut(s) 492
EarI CTCTTC 1 cut(s) 492
Eco130I CCWWGG 2 cut(s) 125, 434
Eco57I CTGAAG 1 cut(s) 444
EcoRI GAATTC 1 cut(s) 154
EcoRII CCWGG 3 cut(s) 286, 516, 918
EcoT14I CCWWGG 2 cut(s) 125, 434
ErhI CCWWGG 2 cut(s) 125, 434
FaeI CATG 2 cut(s) 129, 734
FalI AAGNNNNNCTT 2 cut(s) 701, 733
FaqI GGGAC 1 cut(s) 175
FatI CATG 2 cut(s) 125, 730
FauI CCCGC 1 cut(s) 315
FbaI TGATCA 1 cut(s) 693
Fnu4HI GCNGC 6 cut(s) 102, 131, 456, 624, 755, 857
FokI GGATG 3 cut(s) 74, 221, 245
Fsp4HI GCNGC 6 cut(s) 102, 131, 456, 624, 755, 857
FspBI CTAG 1 cut(s) 581
GluI GCNGC 6 cut(s) 102, 131, 456, 624, 755, 857
GsuI CTGGAG 1 cut(s) 309
HaeIII GGCC 1 cut(s) 511
HapII CCGG 2 cut(s) 80, 725
HgaI GACGC 1 cut(s) 1001
Hin1II CATG 2 cut(s) 129, 734
HincII GTYRAC 2 cut(s) 904, 1029
HindII GTYRAC 2 cut(s) 904, 1029
HindIII AAGCTT 2 cut(s) 715, 1019
HpaII CCGG 2 cut(s) 80, 725
HphI GGTGA 2 cut(s) 185, 979
Hpy166II GTNNAC 4 cut(s) 380, 904, 916, 1029
Hpy188I TCNGA 6 cut(s) 7, 426, 480, 659, 750, 957
Hpy188III TCNNGA 2 cut(s) 377, 557
Hpy8I GTNNAC 4 cut(s) 380, 904, 916, 1029
HpyAV CCTTC 3 cut(s) 49, 295, 659
HpyCH4III ACNGT 4 cut(s) 166, 355, 595, 639
HpyCH4V TGCA 5 cut(s) 590, 606, 635, 721, 859
HpyF10VI GCNNNNNNNGC 5 cut(s) 85, 130, 508, 632, 1018
HpyF3I CTNAG 6 cut(s) 6, 89, 105, 144, 627, 1060
Hsp92II CATG 2 cut(s) 129, 734
Ksp22I TGATCA 1 cut(s) 693
Kzo9I GATC 1 cut(s) 693
LguI GCTCTTC 1 cut(s) 492
Lsp1109I GCAGC 5 cut(s) 117, 442, 610, 741, 843
LweI GCATC 2 cut(s) 111, 678
MabI ACCWGGT 1 cut(s) 918
MaeI CTAG 1 cut(s) 581
MaeIII GTNAC 3 cut(s) 583, 985, 1013
MalI GATC 1 cut(s) 695
MbiI CCGCTC 1 cut(s) 322
MboI GATC 1 cut(s) 693
MboII GAAGA 4 cut(s) 224, 361, 509, 785
MfeI CAATTG 1 cut(s) 929
MhlI GDGCHC 1 cut(s) 530
MlsI TGGCCA 1 cut(s) 511
MluCI AATT 6 cut(s) 13, 154, 249, 372, 929, 959
MluNI TGGCCA 1 cut(s) 511
MlyI GAGTC 5 cut(s) 17, 80, 202, 711, 792
MmeI TCCRAC 2 cut(s) 181, 682
Mox20I TGGCCA 1 cut(s) 511
MscI TGGCCA 1 cut(s) 511
MseI TTAA 1 cut(s) 252
Msp20I TGGCCA 1 cut(s) 511
MspI CCGG 2 cut(s) 80, 725
MspR9I CCNGG 4 cut(s) 288, 518, 725, 920
MunI CAATTG 1 cut(s) 929
MvaI CCWGG 3 cut(s) 288, 518, 920
MvnI CGCG 2 cut(s) 413, 574
MwoI GCNNNNNNNGC 5 cut(s) 85, 130, 508, 632, 1018
NciI CCSGG 1 cut(s) 725
NcoI CCATGG 1 cut(s) 125
NdeII GATC 1 cut(s) 693
NlaIII CATG 2 cut(s) 129, 734
NmuCI GTSAC 3 cut(s) 583, 985, 1013
NspV TTCGAA 1 cut(s) 347
PciSI GCTCTTC 1 cut(s) 492
PfeI GAWTC 7 cut(s) 44, 113, 260, 338, 652, 839, 871
PkrI GCNGC 6 cut(s) 103, 132, 457, 625, 756, 858
PleI GAGTC 5 cut(s) 16, 79, 201, 710, 791
PpsI GAGTC 5 cut(s) 16, 79, 201, 710, 791
PshBI ATTAAT 1 cut(s) 252
Psp6I CCWGG 3 cut(s) 286, 516, 918
PspGI CCWGG 3 cut(s) 286, 516, 918
PstI CTGCAG 1 cut(s) 608
PstNI CAGNNNCTG 2 cut(s) 523, 754
RsaI GTAC 1 cut(s) 602
RsaNI GTAC 1 cut(s) 601
SapI GCTCTTC 1 cut(s) 492
SaqAI TTAA 1 cut(s) 252
SatI GCNGC 6 cut(s) 102, 131, 456, 624, 755, 857
Sau3AI GATC 1 cut(s) 693
ScaI AGTACT 1 cut(s) 602
SchI GAGTC 5 cut(s) 17, 80, 202, 711, 792
ScrFI CCNGG 4 cut(s) 288, 518, 725, 920
SduI GDGCHC 1 cut(s) 530
SexAI ACCWGGT 1 cut(s) 918
SfaNI GCATC 2 cut(s) 111, 678
SfcI CTRYAG 1 cut(s) 604
SfuI TTCGAA 1 cut(s) 347
Sse9I AATT 6 cut(s) 13, 154, 249, 372, 929, 959
SsiI CCGC 3 cut(s) 101, 322, 413
SspI AATATT 2 cut(s) 256, 809
SspMI CTAG 1 cut(s) 581
StyD4I CCNGG 4 cut(s) 286, 516, 723, 918
StyI CCWWGG 2 cut(s) 125, 434
TaaI ACNGT 4 cut(s) 166, 355, 595, 639
TaqI TCGA 4 cut(s) 11, 243, 347, 530
TasI AATT 6 cut(s) 13, 154, 249, 372, 929, 959
TatI WGTACW 1 cut(s) 600
TauI GCSGC 1 cut(s) 104
TfiI GAWTC 7 cut(s) 44, 113, 260, 338, 652, 839, 871
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TscAI CASTG 4 cut(s) 123, 171, 642, 654
TseFI GTSAC 3 cut(s) 583, 985, 1013
TseI GCWGC 5 cut(s) 130, 455, 623, 754, 856
Tsp45I GTSAC 3 cut(s) 583, 985, 1013
TspDTI ATGAA 4 cut(s) 225, 384, 576, 872
TspRI CASTG 4 cut(s) 123, 171, 642, 654
VspI ATTAAT 1 cut(s) 252
XapI RAATTY 3 cut(s) 154, 372, 959
XspI CTAG 1 cut(s) 581
ZrmI AGTACT 1 cut(s) 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.