MD15G1205200.v1.1

Fanconi Anaemia group E protein FANCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0014432
Physical Location & Seq
Reverse (-)
16313446 .. 16316174
2729 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1205200.v1.1.491

Sequence Viewer

Length: 1218 bp
ATGGAGCAGTGGGTCCCACTCTTCGACATCTTCTTGACTTCCCCGACTCCCGAACCCGAAGCTTCTGCGTGGATAAACCAATCTTTCAGCGCCTCCTCGTCATCGGCTACCCCAATCACCACCGGCTCCTTCCTCTTGTTGCTGATGAAACCTCTGGACTCGATCGTTGCCAGAGATTCTCGTTCTTCGACTTCGGGTTTTTATACAGACTCTTCCGAACATGGTTCAGAGCTTGATTTATGGGCTCAGAGGGCTTCACGCAATCTGCTCGATGGAATGTCTGAGTCAAGTTATGAGTGGATTAATTGCTTGAGTTTGGATTCCGTGGAGGATGCGTTTGAGTCCTTGCCTAGTTGGCTTAAGGACTCCGTGGCTTCCAGTGATCTGGTCCTACCATGGCTTCCTATATCGCTTGAGGAATTGAATTCGAGGACAATGAGTGGTAATTGTGAAAACTATGATGGCTCATCGAGTCAAGTTGGAGAGGATGAAGACGTGTTTATGAATGATGTTCTGGAGGAAATAAATATTGATGACCCAGTTAGCGTTCATCTTGAACCTGAAATTCAAAAAGCGGCAGTTAATTTGAAAGCTCAGGTTGCAGATTTTCAAGCAAATTCTAAAACCATAGGCTTAGCGAATGAAATTCGTGAACTTTGCTTGGACAAAGGAGGAGATTCTTTGACAATTTCGGGATTGATTGAACCTTGGTTAGCTGACGATGAGATTGCTTCAGTTGTACTTTCTTATCTAACAAGCAGAAGCAAAGAAGAGCTTACTTGGCCAAGCCAGGTTTTGTGCTCGGTCATCCTTCCCAAGTTGTTGGTGCTTGAGGAACCAGCTTCTCGAGTATTAGTGATTGCAATGATGGTAAAAATCCTACCAATCATCATGAAAAGCTCGCACACAGTTCGTGCTTCTTCCTTCTTTCAGAAGCTTCTCTGCAGAGAAAAAGATGAGAGGAGAGTCATCTGTCTTCCTTGCCACCAATATCTGATAACGGATAAAATGGTATGGACAGAATCATTGTTTACCCTGCTCCAAAGCATTTTGAATTATAATGTTCATTCAACACAAAGTTCAGATGACCATATTGTTTACCAGGCTCAGCAATTGGCCAGAATTTTTTCCAATTCTCTGAAATTTGGCAACTTTTTTCTTATGCTTAGTCAACAAATGTTCTCCGCTCTTGAAGCGTCACAAGCTTATATTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 map03460
Pfam Domains
Protein Families
FA_FANCE

Protein Analysis

406

Amino Acids

45.21

Weight (kDa)

4.44

Isoelectric Point (pI)

55.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29560
fragaria_vesca FvH4_1g07200
malus_domestica MD02G1076500.v1.1 MD15G1205200.v1.1
prunus_persica Prupe.7G211900_v2.0.a1
pyrus_communis pycom02g06080 pycom15g18200
rosa_chinensis RchiOBHm_Chr2g0093101
rosa_laevigata RLG00000016368
rosa_multiflora Rmu_sc0006865.1_g000010
rosa_roxburghii Rroxscaffold_2G00148510
rosa_rugosa Rorug02G0032800
rosa_samantha Rh2AG078100 Rh2BG079400 Rh2CG081800 Rh2DG077100
rosa_wichuraiana Rw2G006820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1059
AccBSI CCGCTC 1 cut(s) 1187
AciI CCGC 2 cut(s) 575, 1185
AcoI YGGCCR 2 cut(s) 782, 1116
AcsI RAATTY 6 cut(s) 424, 564, 616, 645, 1122, 1142
AcuI CTGAAG 1 cut(s) 717
AfaI GTAC 1 cut(s) 741
AflII CTTAAG 1 cut(s) 359
AflIII ACRYGT 1 cut(s) 495
AgsI TTSAA 9 cut(s) 424, 557, 569, 589, 611, 704, 1054, 1071, 1193
AjiI CACGTC 1 cut(s) 496
AjnI CCWGG 2 cut(s) 789, 1101
AluBI AGCT 9 cut(s) 62, 232, 593, 716, 775, 842, 900, 937, 1205
AluI AGCT 9 cut(s) 62, 232, 593, 716, 775, 842, 900, 937, 1205
Alw21I GWGCWC 1 cut(s) 803
Ama87I CYCGRG 1 cut(s) 846
AoxI GGCC 2 cut(s) 782, 1116
ApoI RAATTY 6 cut(s) 424, 564, 616, 645, 1122, 1142
AseI ATTAAT 1 cut(s) 303
Asp700I GAANNNNTTC 1 cut(s) 1126
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 2 cut(s) 13, 388
AsuHPI GGTGA 1 cut(s) 109
AvaI CYCGRG 1 cut(s) 846
AvaII GGWCC 2 cut(s) 13, 388
BalI TGGCCA 2 cut(s) 784, 1118
BanII GRGCYC 1 cut(s) 247
BbsI GAAGAC 2 cut(s) 498, 968
Bbv12I GWGCWC 1 cut(s) 803
BccI CCATC 3 cut(s) 266, 455, 862
BcgI CGANNNNNNTGC 8 cut(s) 47, 81, 250, 284, 710, 744, 893, 927
BciT130I CCWGG 2 cut(s) 791, 1103
BfaI CTAG 1 cut(s) 351
BfmI CTRYAG 1 cut(s) 943
BfoI RGCGCY 1 cut(s) 93
BfrI CTTAAG 1 cut(s) 359
BglI GCCNNNNNGGC 1 cut(s) 355
BisI GCNGC 1 cut(s) 576
BlpI GCTNAGC 2 cut(s) 634, 1107
BlsI GCNGC 1 cut(s) 577
Bme1390I CCNGG 2 cut(s) 791, 1103
Bme18I GGWCC 2 cut(s) 13, 388
BmeT110I CYCGRG 1 cut(s) 846
BmgBI CACGTC 1 cut(s) 496
BmgT120I GGNCC 2 cut(s) 13, 388
BmiI GGNNCC 4 cut(s) 14, 15, 127, 837
BmrFI CCNGG 2 cut(s) 791, 1103
BmrI ACTGGG 1 cut(s) 533
BmsI GCATC 1 cut(s) 322
BmuI ACTGGG 1 cut(s) 533
BpiI GAAGAC 2 cut(s) 498, 968
BpmI CTGGAG 1 cut(s) 536
Bpu10I CCTNAGC 1 cut(s) 594
Bpu1102I GCTNAGC 2 cut(s) 634, 1107
BpuEI CTTGAG 3 cut(s) 331, 434, 851
BsaJI CCNNGG 4 cut(s) 324, 369, 395, 707
BsaXI ACNNNNNCTCC 2 cut(s) 320, 350
Bse118I RCCGGY 1 cut(s) 122
Bse1I ACTGG 2 cut(s) 378, 539
Bse3DI GCAATG 1 cut(s) 870
BseBI CCWGG 2 cut(s) 791, 1103
BseDI CCNNGG 4 cut(s) 324, 369, 395, 707
BseGI GGATG 3 cut(s) 337, 493, 807
BseMI GCAATG 1 cut(s) 870
BseMII CTCAG 4 cut(s) 260, 273, 608, 1121
BseNI ACTGG 2 cut(s) 378, 539
BseRI GAGGAG 3 cut(s) 85, 687, 976
Bsh1285I CGRYCG 1 cut(s) 165
BshFI GGCC 2 cut(s) 784, 1118
BsiEI CGRYCG 1 cut(s) 165
BsiHKAI GWGCWC 1 cut(s) 803
BsiHKCI CYCGRG 1 cut(s) 846
BsiSI CCGG 1 cut(s) 123
BsnI GGCC 2 cut(s) 784, 1118
BsoBI CYCGRG 1 cut(s) 846
Bsp1286I GDGCHC 2 cut(s) 247, 803
Bsp143I GATC 2 cut(s) 162, 382
Bsp1720I GCTNAGC 2 cut(s) 634, 1107
Bsp19I CCATGG 1 cut(s) 395
BspACI CCGC 2 cut(s) 575, 1185
BspANI GGCC 2 cut(s) 784, 1118
BspCNI CTCAG 4 cut(s) 259, 274, 607, 1120
BspHI TCATGA 1 cut(s) 891
BspLI GGNNCC 4 cut(s) 14, 15, 127, 837
BspMAI CTGCAG 1 cut(s) 947
BspQI GCTCTTC 1 cut(s) 765
BspTI CTTAAG 1 cut(s) 359
BsrBI CCGCTC 1 cut(s) 1187
BsrDI GCAATG 1 cut(s) 870
BsrFI RCCGGY 1 cut(s) 122
BsrI ACTGG 2 cut(s) 378, 539
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 4 cut(s) 324, 369, 395, 707
BssMI GATC 2 cut(s) 162, 382
BssT1I CCWWGG 2 cut(s) 395, 707
Bst2UI CCWGG 2 cut(s) 791, 1103
Bst4CI ACNGT 1 cut(s) 910
Bst6I CTCTTC 3 cut(s) 26, 217, 765
BstAFI CTTAAG 1 cut(s) 359
BstC8I GCNNGC 1 cut(s) 902
BstDEI CTNAG 6 cut(s) 246, 282, 594, 634, 1107, 1166
BstDSI CCRYGG 3 cut(s) 324, 369, 395
BstF5I GGATG 3 cut(s) 337, 493, 807
BstH2I RGCGCY 1 cut(s) 93
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 2 cut(s) 165, 385
BstMBI GATC 2 cut(s) 162, 382
BstMCI CGRYCG 1 cut(s) 165
BstMWI GCNNNNNNNGC 6 cut(s) 251, 355, 599, 781, 1193, 1202
BstNI CCWGG 2 cut(s) 791, 1103
BstSCI CCNGG 2 cut(s) 789, 1101
BstSFI CTRYAG 1 cut(s) 943
BstV2I GAAGAC 2 cut(s) 498, 968
BstXI CCANNNNNNTGG 2 cut(s) 385, 823
BsuRI GGCC 2 cut(s) 784, 1118
BtgI CCRYGG 3 cut(s) 324, 369, 395
BtrI CACGTC 1 cut(s) 496
BtsCI GGATG 3 cut(s) 337, 493, 807
BtsI GCAGTG 1 cut(s) 14
BtsIMutI CAGTG 2 cut(s) 14, 385
Cac8I GCNNGC 1 cut(s) 902
CciI TCATGA 1 cut(s) 891
CfoI GCGC 1 cut(s) 92
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 2 cut(s) 13, 388
CseI GACGC 1 cut(s) 1185
Csp6I GTAC 1 cut(s) 740
CviAII CATG 3 cut(s) 221, 396, 892
CviQI GTAC 1 cut(s) 740
DdeI CTNAG 6 cut(s) 246, 282, 594, 634, 1107, 1166
DpnI GATC 2 cut(s) 164, 384
DpnII GATC 2 cut(s) 162, 382
EaeI YGGCCR 2 cut(s) 782, 1116
Eam1104I CTCTTC 3 cut(s) 26, 217, 765
EarI CTCTTC 3 cut(s) 26, 217, 765
Eco130I CCWWGG 2 cut(s) 395, 707
Eco24I GRGCYC 1 cut(s) 247
Eco47I GGWCC 2 cut(s) 13, 388
Eco57I CTGAAG 1 cut(s) 717
Eco88I CYCGRG 1 cut(s) 846
EcoO109I RGGNCCY 1 cut(s) 13
EcoRI GAATTC 1 cut(s) 424
EcoRII CCWGG 2 cut(s) 789, 1101
EcoT14I CCWWGG 2 cut(s) 395, 707
EcoT38I GRGCYC 1 cut(s) 247
ErhI CCWWGG 2 cut(s) 395, 707
FaeI CATG 3 cut(s) 224, 399, 895
FalI AAGNNNNNCTT 2 cut(s) 759, 791
FatI CATG 3 cut(s) 220, 395, 891
Fnu4HI GCNGC 1 cut(s) 576
FokI GGATG 3 cut(s) 344, 500, 794
FriOI GRGCYC 1 cut(s) 247
Fsp4HI GCNGC 1 cut(s) 576
FspBI CTAG 1 cut(s) 351
GlaI GCGC 1 cut(s) 91
GluI GCNGC 1 cut(s) 576
GsuI CTGGAG 1 cut(s) 536
HaeII RGCGCY 1 cut(s) 93
HaeIII GGCC 2 cut(s) 784, 1118
HapII CCGG 1 cut(s) 123
HgaI GACGC 1 cut(s) 1185
HhaI GCGC 1 cut(s) 92
Hin1II CATG 3 cut(s) 224, 399, 895
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HincII GTYRAC 1 cut(s) 1172
HindII GTYRAC 1 cut(s) 1172
HindIII AAGCTT 3 cut(s) 60, 935, 1203
HpaII CCGG 1 cut(s) 123
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 4 cut(s) 653, 1032, 1099, 1172
Hpy188I TCNGA 8 cut(s) 217, 229, 249, 283, 933, 996, 1084, 1140
Hpy8I GTNNAC 4 cut(s) 653, 1032, 1099, 1172
HpyAV CCTTC 3 cut(s) 139, 821, 934
HpyCH4III ACNGT 1 cut(s) 910
HpyCH4IV ACGT 1 cut(s) 495
HpyCH4V TGCA 3 cut(s) 602, 863, 945
HpyF10VI GCNNNNNNNGC 6 cut(s) 251, 355, 599, 781, 1193, 1202
HpyF3I CTNAG 6 cut(s) 246, 282, 594, 634, 1107, 1166
HpySE526I ACGT 1 cut(s) 495
Hsp92II CATG 3 cut(s) 224, 399, 895
HspAI GCGC 1 cut(s) 90
KflI GGGWCCC 1 cut(s) 13
Kzo9I GATC 2 cut(s) 162, 382
LguI GCTCTTC 1 cut(s) 765
LmnI GCTCC 3 cut(s) 4, 131, 1044
LweI GCATC 1 cut(s) 322
MaeI CTAG 1 cut(s) 351
MaeII ACGT 1 cut(s) 495
MaeIII GTNAC 1 cut(s) 1197
MalI GATC 2 cut(s) 164, 384
MbiI CCGCTC 1 cut(s) 1187
MboI GATC 2 cut(s) 162, 382
MboII GAAGA 8 cut(s) 13, 22, 177, 204, 503, 782, 912, 968
MfeI CAATTG 1 cut(s) 1112
MhlI GDGCHC 2 cut(s) 247, 803
MlsI TGGCCA 2 cut(s) 784, 1118
MluNI TGGCCA 2 cut(s) 784, 1118
MlyI GAGTC 8 cut(s) 40, 152, 203, 293, 350, 359, 481, 975
MmeI TCCRAC 1 cut(s) 460
Mox20I TGGCCA 2 cut(s) 784, 1118
MroXI GAANNNNTTC 1 cut(s) 1126
MscI TGGCCA 2 cut(s) 784, 1118
MseI TTAA 3 cut(s) 303, 360, 582
Msp20I TGGCCA 2 cut(s) 784, 1118
MspCI CTTAAG 1 cut(s) 359
MspI CCGG 1 cut(s) 123
MspR9I CCNGG 2 cut(s) 791, 1103
MunI CAATTG 1 cut(s) 1112
MvaI CCWGG 2 cut(s) 791, 1103
MwoI GCNNNNNNNGC 6 cut(s) 251, 355, 599, 781, 1193, 1202
NcoI CCATGG 1 cut(s) 395
NdeII GATC 2 cut(s) 162, 382
NlaIII CATG 3 cut(s) 224, 399, 895
NlaIV GGNNCC 4 cut(s) 14, 15, 127, 837
NmuCI GTSAC 1 cut(s) 1197
PaeR7I CTCGAG 1 cut(s) 846
PagI TCATGA 1 cut(s) 891
PciSI GCTCTTC 1 cut(s) 765
PdmI GAANNNNTTC 1 cut(s) 1126
PfeI GAWTC 4 cut(s) 176, 320, 677, 1022
PkrI GCNGC 1 cut(s) 577
Ple19I CGATCG 1 cut(s) 165
PleI GAGTC 8 cut(s) 40, 152, 203, 292, 349, 359, 480, 974
PpsI GAGTC 8 cut(s) 40, 152, 203, 292, 349, 359, 480, 974
PpuMI RGGWCCY 1 cut(s) 13
PshBI ATTAAT 1 cut(s) 303
PsiI TTATAA 1 cut(s) 1059
Psp5II RGGWCCY 1 cut(s) 13
Psp6I CCWGG 2 cut(s) 789, 1101
PspGI CCWGG 2 cut(s) 789, 1101
PspN4I GGNNCC 4 cut(s) 14, 15, 127, 837
PspPI GGNCC 2 cut(s) 13, 388
PspPPI RGGWCCY 1 cut(s) 13
PstI CTGCAG 1 cut(s) 947
PvuI CGATCG 1 cut(s) 165
RsaI GTAC 1 cut(s) 741
RsaNI GTAC 1 cut(s) 740
SapI GCTCTTC 1 cut(s) 765
SaqAI TTAA 3 cut(s) 303, 360, 582
SatI GCNGC 1 cut(s) 576
Sau3AI GATC 2 cut(s) 162, 382
Sau96I GGNCC 2 cut(s) 13, 388
SchI GAGTC 8 cut(s) 40, 152, 203, 293, 350, 359, 481, 975
ScrFI CCNGG 2 cut(s) 791, 1103
SduI GDGCHC 2 cut(s) 247, 803
SfaNI GCATC 1 cut(s) 322
SfcI CTRYAG 1 cut(s) 943
Sfr274I CTCGAG 1 cut(s) 846
SinI GGWCC 2 cut(s) 13, 388
SlaI CTCGAG 1 cut(s) 846
SmlI CTYRAG 5 cut(s) 310, 359, 413, 830, 846
SmoI CTYRAG 5 cut(s) 310, 359, 413, 830, 846
SsiI CCGC 2 cut(s) 575, 1185
SspI AATATT 1 cut(s) 529
SspMI CTAG 1 cut(s) 351
StyD4I CCNGG 2 cut(s) 789, 1101
StyI CCWWGG 2 cut(s) 395, 707
TaaI ACNGT 1 cut(s) 910
TaiI ACGT 1 cut(s) 498
TaqI TCGA 7 cut(s) 24, 161, 188, 270, 428, 470, 847
TaqII GACCGA 1 cut(s) 793
TatI WGTACW 1 cut(s) 739
TauI GCSGC 1 cut(s) 578
TfiI GAWTC 4 cut(s) 176, 320, 677, 1022
Tru1I TTAA 3 cut(s) 303, 360, 582
Tru9I TTAA 3 cut(s) 303, 360, 582
TscAI CASTG 2 cut(s) 14, 385
TseFI GTSAC 1 cut(s) 1197
Tsp45I GTSAC 1 cut(s) 1197
TspDTI ATGAA 7 cut(s) 161, 504, 518, 539, 657, 908, 1055
TspGWI ACGGA 3 cut(s) 313, 358, 1016
TspRI CASTG 2 cut(s) 14, 385
Vha464I CTTAAG 1 cut(s) 359
VpaK11BI GGWCC 2 cut(s) 13, 388
VspI ATTAAT 1 cut(s) 303
XapI RAATTY 6 cut(s) 424, 564, 616, 645, 1122, 1142
XhoI CTCGAG 1 cut(s) 846
XmnI GAANNNNTTC 1 cut(s) 1126
XspI CTAG 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.