Rh2BG079400

Fanconi Anaemia group E protein FANCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0014432
Physical Location & Seq
Reverse (-)
6077152 .. 6078501
1350 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG079400.1

Sequence Viewer

Length: 1350 bp
ATGGGCCGAACCCAAGTTCTGATTTTGATGAGTTTTGATCGGAGACTGATAGAGTCTGGTACTGGGTTTTACAGGGTGATGTTTATACAGACTCTGCCGAATGTGGTTCAGGCGAGGGTTTTGTCGTTTCTGGCTTTGGATCGTGAAAGGTTTAGCGGCAGGGAGCTGGGTAAATTGGCTAGAAATGTTTTGAGTTGTGATCAGGGGGTTGATTTTTGGGTCCAGAAATCTGCACGCCACCTGCTCGACGTAATGTCTGAGTCAAATTACGAGTGGATTTCCTGCTTGGGTTTGGATTCCGGGGAGGAGGAGGATGAGTTTGAATCGTTGCCGGATTGGCTTAAGGTGTCGGCGGCTGAGAGTGATTCAGTGATGCCATGGCTGCCTATATCGGCTGAGGTGTTGAATTCAAGGACAGTGAGTGGTGAGGATGGTGGTTCGTTGAGTCAAGTTGGAGGGGATGAAGATGAGGATTTGGATATGGATGATGTTGTCGAGGAAATGAATATTGATTCCCCAAAAAGTTTTGATATTGAACCTGGAGTTAGAGAGAAGGCTATTAGTTTGAAAGAGCGGGTTGTGAGTTTTGAATCAACTTCAAAGACTGTGGGATTAACAAATGAAATTCGTGAACTTTGCTTGGGCAAAGGAGGAGAATGTTTCGCGGTTTTGGGTCTGATTGAACCTTGGTTAGCTGATGATGAGACTGCTTCAGTTCTACTTTCTCATCTGACAAGTGGAGGCGAGGAAGAGCTTACTTGGCCAAGCCAGGTTCTGTGCTCGATTGTCCTGCCCAAGTTGTTGGTCCTTGAGGAACCAGCCTCACGTGTGCTAGTGACCGCAATAGTAGAGTACTGCAGGCTACACCAAAGGGCTGCTGAGTATGCACTGTTGTTTCCACTGATTCTCCAACAGGAAGGCATCAACAATCCTATATATGATGTGATCACAAGAGTCATCAAGGAAAGCTTGCACCCGGCTCATGTCTCATCTTTCTGTCAGAAGCTGCTGTGTGGAGAAAAAGATGAGAGGAGAGTCATTTGCCTTCCTTGCCACAAATATTTGATAACTGATAAAATGGTATGGACAGAATCATTGTTCAGCCTGCTGCAAAGCATTTTGAATCATAATATTCATTTTACACAGAGTTCTGTTGACCATATTGTTTACCAGGTTCAGCAATTGGCTGAAACATTTTCTAACTCTCTGAAATTTGGGAACTTTTTGTTATGTTTAGTCACCAAATGCTCTCCATTGTTGAAGCCTCACAAGCTTATGTTGACTAAAGTAGTTGAGCAAAACAAAACATTCTTAGCTAAATCTATATTATGTAAAATAGCTGGCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 map03460
Pfam Domains
Protein Families
FA_FANCE

Protein Analysis

449

Amino Acids

50.32

Weight (kDa)

4.93

Isoelectric Point (pI)

51.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29560
fragaria_vesca FvH4_1g07200
malus_domestica MD02G1076500.v1.1 MD15G1205200.v1.1
prunus_persica Prupe.7G211900_v2.0.a1
pyrus_communis pycom02g06080 pycom15g18200
rosa_chinensis RchiOBHm_Chr2g0093101
rosa_laevigata RLG00000016368
rosa_multiflora Rmu_sc0006865.1_g000010
rosa_roxburghii Rroxscaffold_2G00148510
rosa_rugosa Rorug02G0032800
rosa_samantha Rh2AG078100 Rh2BG079400 Rh2CG081800 Rh2DG077100
rosa_wichuraiana Rw2G006820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 249
Acc36I ACCTGC 1 cut(s) 249
AccBSI CCGCTC 1 cut(s) 574
AccII CGCG 1 cut(s) 665
AciI CCGC 5 cut(s) 156, 353, 574, 665, 840
AclWI GGATC 1 cut(s) 147
AcoI YGGCCR 1 cut(s) 761
AcsI RAATTY 3 cut(s) 406, 624, 1211
AcuI CTGAAG 1 cut(s) 696
AcvI CACGTG 1 cut(s) 827
AfaI GTAC 2 cut(s) 61, 854
AflII CTTAAG 1 cut(s) 341
AflIII ACRYGT 1 cut(s) 826
AhdI GACNNNNNGTC 1 cut(s) 253
AjnI CCWGG 3 cut(s) 538, 768, 1170
AluBI AGCT 8 cut(s) 166, 695, 754, 969, 1006, 1273, 1316, 1340
AluI AGCT 8 cut(s) 166, 695, 754, 969, 1006, 1273, 1316, 1340
Alw21I GWGCWC 1 cut(s) 782
Alw26I GTCTC 3 cut(s) 37, 698, 991
AlwI GGATC 1 cut(s) 147
AlwNI CAGNNNCTG 3 cut(s) 94, 775, 1006
AoxI GGCC 2 cut(s) 4, 761
ApeKI GCWGC 4 cut(s) 382, 875, 1006, 1108
ApoI RAATTY 3 cut(s) 406, 624, 1211
AspS9I GGNCC 3 cut(s) 4, 220, 805
AsuC2I CCSGG 2 cut(s) 301, 977
AsuHPI GGTGA 3 cut(s) 88, 437, 1231
AvaII GGWCC 2 cut(s) 220, 805
BalI TGGCCA 1 cut(s) 763
BbrPI CACGTG 1 cut(s) 827
Bbv12I GWGCWC 1 cut(s) 782
BbvCI CCTCAGC 1 cut(s) 396
BbvI GCAGC 4 cut(s) 369, 862, 993, 1095
BccI CCATC 1 cut(s) 425
BcgI CGANNNNNNTGC 2 cut(s) 772, 806
BciT130I CCWGG 3 cut(s) 540, 770, 1172
BclI TGATCA 2 cut(s) 199, 945
BcnI CCSGG 2 cut(s) 301, 977
BcoDI GTCTC 3 cut(s) 37, 698, 991
BfaI CTAG 2 cut(s) 180, 833
BfmI CTRYAG 1 cut(s) 856
BfrI CTTAAG 1 cut(s) 341
BfuAI ACCTGC 1 cut(s) 249
BglI GCCNNNNNGGC 1 cut(s) 337
BisI GCNGC 6 cut(s) 157, 354, 383, 876, 1007, 1109
BlsI GCNGC 6 cut(s) 158, 355, 384, 877, 1008, 1110
BmcAI AGTACT 1 cut(s) 854
Bme1390I CCNGG 5 cut(s) 301, 540, 770, 977, 1172
Bme18I GGWCC 2 cut(s) 220, 805
BmeRI GACNNNNNGTC 1 cut(s) 253
BmgT120I GGNCC 3 cut(s) 4, 220, 805
BmiI GGNNCC 2 cut(s) 221, 816
BmrFI CCNGG 5 cut(s) 301, 540, 770, 977, 1172
BmrI ACTGGG 1 cut(s) 72
BmsI GCATC 2 cut(s) 363, 930
BmuI ACTGGG 1 cut(s) 72
BpmI CTGGAG 1 cut(s) 561
Bpu10I CCTNAGC 1 cut(s) 396
BpuEI CTTGAG 1 cut(s) 830
BpuMI CCSGG 2 cut(s) 301, 977
BsaAI YACGTR 1 cut(s) 827
BsaJI CCNNGG 3 cut(s) 300, 377, 686
BsaXI ACNNNNNCTCC 4 cut(s) 302, 332, 891, 921
Bse1I ACTGG 1 cut(s) 67
BseBI CCWGG 3 cut(s) 540, 770, 1172
BseDI CCNNGG 3 cut(s) 300, 377, 686
BseGI GGATG 4 cut(s) 319, 436, 466, 490
BseMII CTCAG 4 cut(s) 249, 348, 387, 870
BseNI ACTGG 1 cut(s) 67
BseRI GAGGAG 4 cut(s) 320, 323, 666, 1045
BseXI GCAGC 4 cut(s) 369, 862, 993, 1095
BseYI CCCAGC 1 cut(s) 166
BsgI GTGCAG 1 cut(s) 216
Bsh1236I CGCG 1 cut(s) 665
BshFI GGCC 2 cut(s) 6, 763
BsiHKAI GWGCWC 1 cut(s) 782
BsiSI CCGG 3 cut(s) 300, 332, 977
BsmAI GTCTC 3 cut(s) 37, 698, 991
BsnI GGCC 2 cut(s) 6, 763
Bsp1286I GDGCHC 1 cut(s) 782
Bsp143I GATC 4 cut(s) 37, 139, 199, 945
Bsp19I CCATGG 1 cut(s) 377
BspACI CCGC 5 cut(s) 156, 353, 574, 665, 840
BspANI GGCC 2 cut(s) 6, 763
BspCNI CTCAG 4 cut(s) 250, 349, 388, 871
BspFNI CGCG 1 cut(s) 665
BspLI GGNNCC 2 cut(s) 221, 816
BspMAI CTGCAG 1 cut(s) 860
BspMI ACCTGC 1 cut(s) 249
BspPI GGATC 1 cut(s) 147
BspQI GCTCTTC 1 cut(s) 744
BspTI CTTAAG 1 cut(s) 341
BsrBI CCGCTC 1 cut(s) 574
BsrI ACTGG 1 cut(s) 67
BssECI CCNNGG 3 cut(s) 300, 377, 686
BssMI GATC 4 cut(s) 37, 139, 199, 945
BssT1I CCWWGG 2 cut(s) 377, 686
Bst2UI CCWGG 3 cut(s) 540, 770, 1172
Bst4CI ACNGT 3 cut(s) 418, 607, 891
Bst6I CTCTTC 1 cut(s) 744
BstAFI CTTAAG 1 cut(s) 341
BstBAI YACGTR 1 cut(s) 827
BstC8I GCNNGC 5 cut(s) 235, 860, 971, 1106, 1342
BstDEI CTNAG 5 cut(s) 258, 357, 396, 879, 1312
BstDSI CCRYGG 1 cut(s) 377
BstF5I GGATG 4 cut(s) 319, 436, 466, 490
BstFNI CGCG 1 cut(s) 665
BstKTI GATC 4 cut(s) 40, 142, 202, 948
BstMAI GTCTC 3 cut(s) 37, 698, 991
BstMBI GATC 4 cut(s) 37, 139, 199, 945
BstMWI GCNNNNNNNGC 6 cut(s) 337, 382, 760, 884, 1050, 1270
BstNI CCWGG 3 cut(s) 540, 770, 1172
BstSCI CCNGG 5 cut(s) 299, 538, 768, 975, 1170
BstSFI CTRYAG 1 cut(s) 856
BstUI CGCG 1 cut(s) 665
BstV1I GCAGC 4 cut(s) 369, 862, 993, 1095
BstXI CCANNNNNNTGG 1 cut(s) 802
BsuRI GGCC 2 cut(s) 6, 763
BtgI CCRYGG 1 cut(s) 377
BtsCI GGATG 4 cut(s) 319, 436, 466, 490
BtsIMutI CAGTG 4 cut(s) 375, 423, 887, 899
BveI ACCTGC 1 cut(s) 249
Cac8I GCNNGC 5 cut(s) 235, 860, 971, 1106, 1342
CaiI CAGNNNCTG 3 cut(s) 94, 775, 1006
Cfr13I GGNCC 3 cut(s) 4, 220, 805
CsiI ACCWGGT 1 cut(s) 1170
Csp6I GTAC 2 cut(s) 60, 853
CspCI CAANNNNNGTGG 2 cut(s) 588, 623
CviAII CATG 2 cut(s) 378, 983
CviQI GTAC 2 cut(s) 60, 853
DdeI CTNAG 5 cut(s) 258, 357, 396, 879, 1312
DpnI GATC 4 cut(s) 39, 141, 201, 947
DpnII GATC 4 cut(s) 37, 139, 199, 945
DriI GACNNNNNGTC 1 cut(s) 253
EaeI YGGCCR 1 cut(s) 761
Eam1104I CTCTTC 1 cut(s) 744
Eam1105I GACNNNNNGTC 1 cut(s) 253
EarI CTCTTC 1 cut(s) 744
Eco130I CCWWGG 2 cut(s) 377, 686
Eco47I GGWCC 2 cut(s) 220, 805
Eco57I CTGAAG 1 cut(s) 696
Eco72I CACGTG 1 cut(s) 827
EcoRI GAATTC 1 cut(s) 406
EcoRII CCWGG 3 cut(s) 538, 768, 1170
EcoT14I CCWWGG 2 cut(s) 377, 686
ErhI CCWWGG 2 cut(s) 377, 686
FaeI CATG 2 cut(s) 381, 986
FalI AAGNNNNNCTT 2 cut(s) 953, 985
FatI CATG 2 cut(s) 377, 982
FauI CCCGC 1 cut(s) 567
FbaI TGATCA 2 cut(s) 199, 945
Fnu4HI GCNGC 6 cut(s) 157, 354, 383, 876, 1007, 1109
FokI GGATG 4 cut(s) 326, 443, 473, 497
Fsp4HI GCNGC 6 cut(s) 157, 354, 383, 876, 1007, 1109
FspBI CTAG 2 cut(s) 180, 833
GluI GCNGC 6 cut(s) 157, 354, 383, 876, 1007, 1109
GsaI CCCAGC 1 cut(s) 170
GsuI CTGGAG 1 cut(s) 561
HaeIII GGCC 2 cut(s) 6, 763
HapII CCGG 3 cut(s) 300, 332, 977
Hin1II CATG 2 cut(s) 381, 986
HincII GTYRAC 2 cut(s) 1156, 1281
HindII GTYRAC 2 cut(s) 1156, 1281
HindIII AAGCTT 2 cut(s) 967, 1271
HpaII CCGG 3 cut(s) 300, 332, 977
HphI GGTGA 3 cut(s) 88, 437, 1231
Hpy166II GTNNAC 4 cut(s) 632, 1156, 1168, 1281
Hpy188I TCNGA 7 cut(s) 21, 42, 259, 678, 732, 1002, 1209
Hpy188III TCNNGA 3 cut(s) 143, 223, 629
Hpy8I GTNNAC 4 cut(s) 632, 1156, 1168, 1281
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 3 cut(s) 547, 911, 1055
HpyCH4III ACNGT 3 cut(s) 418, 607, 891
HpyCH4IV ACGT 2 cut(s) 249, 826
HpyCH4V TGCA 5 cut(s) 233, 858, 887, 973, 1111
HpyF10VI GCNNNNNNNGC 6 cut(s) 337, 382, 760, 884, 1050, 1270
HpyF3I CTNAG 5 cut(s) 258, 357, 396, 879, 1312
HpySE526I ACGT 2 cut(s) 249, 826
Hsp92II CATG 2 cut(s) 381, 986
Ksp22I TGATCA 2 cut(s) 199, 945
Kzo9I GATC 4 cut(s) 37, 139, 199, 945
LguI GCTCTTC 1 cut(s) 744
LmnI GCTCC 1 cut(s) 163
Lsp1109I GCAGC 4 cut(s) 369, 862, 993, 1095
LweI GCATC 2 cut(s) 363, 930
MabI ACCWGGT 1 cut(s) 1170
MaeI CTAG 2 cut(s) 180, 833
MaeII ACGT 2 cut(s) 249, 826
MaeIII GTNAC 2 cut(s) 835, 1237
MalI GATC 4 cut(s) 39, 141, 201, 947
MbiI CCGCTC 1 cut(s) 574
MboI GATC 4 cut(s) 37, 139, 199, 945
MboII GAAGA 2 cut(s) 476, 761
MfeI CAATTG 1 cut(s) 1181
MhlI GDGCHC 1 cut(s) 782
MlsI TGGCCA 1 cut(s) 763
MluCI AATT 6 cut(s) 173, 265, 406, 624, 1181, 1211
MluNI TGGCCA 1 cut(s) 763
MlyI GAGTC 6 cut(s) 62, 85, 269, 454, 963, 1044
MmeI TCCRAC 2 cut(s) 433, 934
Mox20I TGGCCA 1 cut(s) 763
MscI TGGCCA 1 cut(s) 763
MseI TTAA 2 cut(s) 342, 614
Msp20I TGGCCA 1 cut(s) 763
MspCI CTTAAG 1 cut(s) 341
MspI CCGG 3 cut(s) 300, 332, 977
MspR9I CCNGG 5 cut(s) 301, 540, 770, 977, 1172
MunI CAATTG 1 cut(s) 1181
MvaI CCWGG 3 cut(s) 540, 770, 1172
MvnI CGCG 1 cut(s) 665
MwoI GCNNNNNNNGC 6 cut(s) 337, 382, 760, 884, 1050, 1270
NciI CCSGG 2 cut(s) 301, 977
NcoI CCATGG 1 cut(s) 377
NdeII GATC 4 cut(s) 37, 139, 199, 945
NlaIII CATG 2 cut(s) 381, 986
NlaIV GGNNCC 2 cut(s) 221, 816
NmuCI GTSAC 2 cut(s) 835, 1237
PaqCI CACCTGC 1 cut(s) 249
PciSI GCTCTTC 1 cut(s) 744
PfeI GAWTC 8 cut(s) 296, 323, 365, 512, 590, 904, 1091, 1123
PkrI GCNGC 6 cut(s) 158, 355, 384, 877, 1008, 1110
PleI GAGTC 6 cut(s) 61, 85, 268, 453, 962, 1043
PmaCI CACGTG 1 cut(s) 827
PmlI CACGTG 1 cut(s) 827
PpsI GAGTC 6 cut(s) 61, 85, 268, 453, 962, 1043
Ppu21I YACGTR 1 cut(s) 827
Psp6I CCWGG 3 cut(s) 538, 768, 1170
PspCI CACGTG 1 cut(s) 827
PspFI CCCAGC 1 cut(s) 166
PspGI CCWGG 3 cut(s) 538, 768, 1170
PspN4I GGNNCC 2 cut(s) 221, 816
PspPI GGNCC 3 cut(s) 4, 220, 805
PstI CTGCAG 1 cut(s) 860
PstNI CAGNNNCTG 3 cut(s) 94, 775, 1006
RsaI GTAC 2 cut(s) 61, 854
RsaNI GTAC 2 cut(s) 60, 853
SapI GCTCTTC 1 cut(s) 744
SaqAI TTAA 2 cut(s) 342, 614
SatI GCNGC 6 cut(s) 157, 354, 383, 876, 1007, 1109
Sau3AI GATC 4 cut(s) 37, 139, 199, 945
Sau96I GGNCC 3 cut(s) 4, 220, 805
ScaI AGTACT 1 cut(s) 854
SchI GAGTC 6 cut(s) 62, 85, 269, 454, 963, 1044
ScrFI CCNGG 5 cut(s) 301, 540, 770, 977, 1172
SduI GDGCHC 1 cut(s) 782
SexAI ACCWGGT 1 cut(s) 1170
SfaNI GCATC 2 cut(s) 363, 930
SfcI CTRYAG 1 cut(s) 856
SinI GGWCC 2 cut(s) 220, 805
SmlI CTYRAG 2 cut(s) 341, 809
SmoI CTYRAG 2 cut(s) 341, 809
Sse9I AATT 6 cut(s) 173, 265, 406, 624, 1181, 1211
SsiI CCGC 5 cut(s) 156, 353, 574, 665, 840
SspI AATATT 3 cut(s) 508, 1061, 1132
SspMI CTAG 2 cut(s) 180, 833
StyD4I CCNGG 5 cut(s) 299, 538, 768, 975, 1170
StyI CCWWGG 2 cut(s) 377, 686
TaaI ACNGT 3 cut(s) 418, 607, 891
TaiI ACGT 2 cut(s) 252, 829
TaqI TCGA 3 cut(s) 246, 495, 782
TasI AATT 6 cut(s) 173, 265, 406, 624, 1181, 1211
TatI WGTACW 1 cut(s) 852
TauI GCSGC 2 cut(s) 159, 356
TfiI GAWTC 8 cut(s) 296, 323, 365, 512, 590, 904, 1091, 1123
Tru1I TTAA 2 cut(s) 342, 614
Tru9I TTAA 2 cut(s) 342, 614
TscAI CASTG 4 cut(s) 375, 423, 894, 906
TseFI GTSAC 2 cut(s) 835, 1237
TseI GCWGC 4 cut(s) 382, 875, 1006, 1108
Tsp45I GTSAC 2 cut(s) 835, 1237
TspDTI ATGAA 4 cut(s) 477, 518, 636, 1124
TspRI CASTG 4 cut(s) 375, 423, 894, 906
Vha464I CTTAAG 1 cut(s) 341
VpaK11BI GGWCC 2 cut(s) 220, 805
XapI RAATTY 3 cut(s) 406, 624, 1211
XspI CTAG 2 cut(s) 180, 833
ZrmI AGTACT 1 cut(s) 854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.