helicase MAGATAMA 3
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G19120 AT4G30100 AT4G30100 |
| fragaria_vesca | FvH4_5g37860 FvH4_5g37860 FvH4_5g37860 FvH4_5g37860 FvH4_5g37860 FvH4_5g37860 FvH4_5g37860 FvH4_5g37860 FvH4_5g37860 FvH4_5g37860 FvH4_5g37860 FvH4_5g37860 FvH4_5g37860 FvH4_5g37860 FvH4_5g37860 FvH4_5g37860 FvH4_5g37860 |
| malus_domestica | MD08G1179700.v1.1 MD15G1364900.v1.1 |
| prunus_persica | Prupe.1G513000_v2.0.a1 Prupe.1G513000_v2.0.a1 Prupe.1G513000_v2.0.a1 |
| pyrus_communis | pycom08g15390 pycom13g22410 pycom15g32730 |
| rosa_chinensis | RchiOBHm_Chr7g0239841 |
| rosa_laevigata | RLG00000000726 |
| rosa_multiflora | Rmu_sc0000540.1_g000065 Rmu_sc0018325.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00220770 |
| rosa_rugosa | Rorug07G0329900 Rorug07G0330000 |
| rosa_samantha | Rh7AG483900 Rh7BG456900 Rh7CG501400 Rh7DG469600 |
| rosa_wichuraiana | Rw7G040590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2112 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1009 |
| Acc16I | TGCGCA | 1 cut(s) | 610 |
| Acc36I | ACCTGC | 1 cut(s) | 2987 |
| Acc65I | GGTACC | 1 cut(s) | 3661 |
| AccB1I | GGYRCC | 1 cut(s) | 3661 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3809 |
| AccBSI | CCGCTC | 1 cut(s) | 1270 |
| AccI | GTMKAC | 3 cut(s) | 846, 886, 3405 |
| AccII | CGCG | 5 cut(s) | 194, 2715, 2890, 3051, 3410 |
| AciI | CCGC | 6 cut(s) | 825, 945, 1270, 1923, 3496, 3851 |
| AcoI | YGGCCR | 3 cut(s) | 1870, 1976, 2779 |
| AcsI | RAATTY | 6 cut(s) | 751, 1042, 1133, 2427, 3814, 3904 |
| AcuI | CTGAAG | 4 cut(s) | 458, 1076, 2108, 3293 |
| AcvI | CACGTG | 1 cut(s) | 2279 |
| AcyI | GRCGYC | 2 cut(s) | 3082, 3597 |
| AflII | CTTAAG | 1 cut(s) | 3146 |
| AflIII | ACRYGT | 3 cut(s) | 192, 2278, 3408 |
| AgeI | ACCGGT | 1 cut(s) | 1570 |
| AjnI | CCWGG | 4 cut(s) | 696, 832, 2002, 3749 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1208, 1240 |
| Alw21I | GWGCWC | 3 cut(s) | 337, 2245, 3791 |
| Alw26I | GTCTC | 6 cut(s) | 644, 2568, 2655, 2978, 3301, 3636 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 206, 2381 |
| Ama87I | CYCGRG | 3 cut(s) | 1581, 2337, 3854 |
| AoxI | GGCC | 9 cut(s) | 563, 799, 1870, 1920, 1976, 1996, 2779, 3713, 3914 |
| ApaI | GGGCCC | 1 cut(s) | 2000 |
| ApoI | RAATTY | 6 cut(s) | 751, 1042, 1133, 2427, 3814, 3904 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1103, 1135, 3126, 3158 |
| AsiGI | ACCGGT | 1 cut(s) | 1570 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2985 |
| Asp718I | GGTACC | 1 cut(s) | 3661 |
| AspLEI | GCGC | 4 cut(s) | 611, 2717, 2878, 2890 |
| AspS9I | GGNCC | 8 cut(s) | 719, 800, 980, 1920, 1996, 1997, 2182, 3713 |
| AsuC2I | CCSGG | 4 cut(s) | 851, 3650, 3855, 3856 |
| AsuHPI | GGTGA | 6 cut(s) | 109, 571, 938, 2918, 3505, 3550 |
| AsuNHI | GCTAGC | 1 cut(s) | 2992 |
| AvaI | CYCGRG | 3 cut(s) | 1581, 2337, 3854 |
| AvaII | GGWCC | 3 cut(s) | 719, 980, 2182 |
| BaeGI | GKGCMC | 3 cut(s) | 1336, 1845, 2000 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1173, 1206, 2751, 2784 |
| BalI | TGGCCA | 2 cut(s) | 1872, 1978 |
| BamHI | GGATCC | 1 cut(s) | 3888 |
| BanI | GGYRCC | 1 cut(s) | 3661 |
| BanII | GRGCYC | 1 cut(s) | 2000 |
| BauI | CACGAG | 1 cut(s) | 792 |
| BbrPI | CACGTG | 1 cut(s) | 2279 |
| BbsI | GAAGAC | 4 cut(s) | 144, 751, 1190, 3777 |
| Bbv12I | GWGCWC | 3 cut(s) | 337, 2245, 3791 |
| BbvCI | CCTCAGC | 3 cut(s) | 990, 1365, 2913 |
| BceAI | ACGGC | 3 cut(s) | 1064, 2766, 3929 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2819, 2853 |
| BciT130I | CCWGG | 4 cut(s) | 698, 834, 2004, 3751 |
| BciVI | GTATCC | 1 cut(s) | 1237 |
| BclI | TGATCA | 1 cut(s) | 3588 |
| BcnI | CCSGG | 4 cut(s) | 851, 3650, 3855, 3856 |
| BcoDI | GTCTC | 6 cut(s) | 644, 2568, 2655, 2978, 3301, 3636 |
| BfaI | CTAG | 9 cut(s) | 443, 741, 957, 1797, 2408, 2432, 2993, 3666, 3693 |
| BfrI | CTTAAG | 1 cut(s) | 3146 |
| BfuAI | ACCTGC | 1 cut(s) | 2987 |
| BfuI | GTATCC | 1 cut(s) | 1237 |
| BglII | AGATCT | 1 cut(s) | 2635 |
| BlpI | GCTNAGC | 3 cut(s) | 813, 2466, 3785 |
| Bme1390I | CCNGG | 8 cut(s) | 698, 834, 851, 2004, 3650, 3751, 3855, 3856 |
| Bme18I | GGWCC | 3 cut(s) | 719, 980, 2182 |
| BmeT110I | CYCGRG | 3 cut(s) | 1581, 2337, 3854 |
| BmgT120I | GGNCC | 8 cut(s) | 719, 800, 980, 1920, 1996, 1997, 2182, 3713 |
| BmiI | GGNNCC | 8 cut(s) | 375, 831, 943, 1998, 2953, 3654, 3663, 3890 |
| BmrFI | CCNGG | 8 cut(s) | 698, 834, 851, 2004, 3650, 3751, 3855, 3856 |
| BmrI | ACTGGG | 2 cut(s) | 114, 1927 |
| BmtI | GCTAGC | 1 cut(s) | 2996 |
| BmuI | ACTGGG | 2 cut(s) | 114, 1927 |
| BpiI | GAAGAC | 4 cut(s) | 144, 751, 1190, 3777 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1358, 1390, 1587, 1619 |
| BpmI | CTGGAG | 2 cut(s) | 1238, 1986 |
| Bpu10I | CCTNAGC | 4 cut(s) | 990, 1266, 1365, 2913 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 813, 2466, 3785 |
| BpuEI | CTTGAG | 7 cut(s) | 141, 308, 525, 1775, 2355, 2460, 2744 |
| BpuMI | CCSGG | 4 cut(s) | 851, 3650, 3855, 3856 |
| Bsa29I | ATCGAT | 1 cut(s) | 3732 |
| BsaAI | YACGTR | 1 cut(s) | 2279 |
| BsaBI | GATNNNNATC | 4 cut(s) | 1248, 2634, 3205, 3392 |
| BsaHI | GRCGYC | 2 cut(s) | 3082, 3597 |
| BsaI | GGTCTC | 1 cut(s) | 2568 |
| BsaJI | CCNNGG | 9 cut(s) | 833, 1680, 1973, 2225, 3076, 3175, 3639, 3854, 3855 |
| BsaWI | WCCGGW | 1 cut(s) | 1570 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3614, 3644 |
| Bse118I | RCCGGY | 1 cut(s) | 1570 |
| Bse1I | ACTGG | 2 cut(s) | 120, 1922 |
| Bse3DI | GCAATG | 2 cut(s) | 1932, 2598 |
| Bse8I | GATNNNNATC | 4 cut(s) | 1248, 2634, 3205, 3392 |
| BseBI | CCWGG | 4 cut(s) | 698, 834, 2004, 3751 |
| BseCI | ATCGAT | 1 cut(s) | 3732 |
| BseDI | CCNNGG | 9 cut(s) | 833, 1680, 1973, 2225, 3076, 3175, 3639, 3854, 3855 |
| BseJI | GATNNNNATC | 4 cut(s) | 1248, 2634, 3205, 3392 |
| BseMI | GCAATG | 2 cut(s) | 1932, 2598 |
| BseNI | ACTGG | 2 cut(s) | 120, 1922 |
| BseRI | GAGGAG | 2 cut(s) | 1337, 1887 |
| BseSI | GKGCMC | 3 cut(s) | 1336, 1845, 2000 |
| BseYI | CCCAGC | 1 cut(s) | 1758 |
| BsgI | GTGCAG | 2 cut(s) | 816, 1114 |
| Bsh1236I | CGCG | 5 cut(s) | 194, 2715, 2890, 3051, 3410 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2262 |
| BshFI | GGCC | 9 cut(s) | 565, 801, 1872, 1922, 1978, 1998, 2781, 3715, 3916 |
| BshNI | GGYRCC | 1 cut(s) | 3661 |
| BshTI | ACCGGT | 1 cut(s) | 1570 |
| BshVI | ATCGAT | 1 cut(s) | 3732 |
| BsiEI | CGRYCG | 1 cut(s) | 2262 |
| BsiHKAI | GWGCWC | 3 cut(s) | 337, 2245, 3791 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1581, 2337, 3854 |
| BsiSI | CCGG | 6 cut(s) | 850, 939, 1571, 3493, 3650, 3855 |
| BsiWI | CGTACG | 1 cut(s) | 2198 |
| BslFI | GGGAC | 2 cut(s) | 2401, 3772 |
| BsmAI | GTCTC | 6 cut(s) | 644, 2568, 2655, 2978, 3301, 3636 |
| BsmFI | GGGAC | 2 cut(s) | 2401, 3772 |
| BsnI | GGCC | 9 cut(s) | 565, 801, 1872, 1922, 1978, 1998, 2781, 3715, 3916 |
| Bso31I | GGTCTC | 1 cut(s) | 2568 |
| BsoBI | CYCGRG | 3 cut(s) | 1581, 2337, 3854 |
| Bsp120I | GGGCCC | 1 cut(s) | 1996 |
| Bsp1286I | GDGCHC | 6 cut(s) | 337, 1336, 1845, 2000, 2245, 3791 |
| Bsp1407I | TGTACA | 1 cut(s) | 391 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 813, 2466, 3785 |
| Bsp19I | CCATGG | 2 cut(s) | 1973, 3175 |
| BspACI | CCGC | 6 cut(s) | 825, 945, 1270, 1923, 3496, 3851 |
| BspANI | GGCC | 9 cut(s) | 565, 801, 1872, 1922, 1978, 1998, 2781, 3715, 3916 |
| BspDI | ATCGAT | 1 cut(s) | 3732 |
| BspFNI | CGCG | 5 cut(s) | 194, 2715, 2890, 3051, 3410 |
| BspLI | GGNNCC | 8 cut(s) | 375, 831, 943, 1998, 2953, 3654, 3663, 3890 |
| BspMAI | CTGCAG | 3 cut(s) | 1939, 2515, 3330 |
| BspMI | ACCTGC | 1 cut(s) | 2987 |
| BspOI | GCTAGC | 1 cut(s) | 2996 |
| BspQI | GCTCTTC | 1 cut(s) | 477 |
| BspT107I | GGYRCC | 1 cut(s) | 3661 |
| BspTI | CTTAAG | 1 cut(s) | 3146 |
| BspTNI | GGTCTC | 1 cut(s) | 2568 |
| BsrBI | CCGCTC | 1 cut(s) | 1270 |
| BsrDI | GCAATG | 2 cut(s) | 1932, 2598 |
| BsrFI | RCCGGY | 1 cut(s) | 1570 |
| BsrGI | TGTACA | 1 cut(s) | 391 |
| BsrI | ACTGG | 2 cut(s) | 120, 1922 |
| BssAI | RCCGGY | 1 cut(s) | 1570 |
| BssECI | CCNNGG | 9 cut(s) | 833, 1680, 1973, 2225, 3076, 3175, 3639, 3854, 3855 |
| BssNAI | GTATAC | 2 cut(s) | 847, 887 |
| BssNI | GRCGYC | 2 cut(s) | 3082, 3597 |
| BssSI | CACGAG | 1 cut(s) | 792 |
| BssT1I | CCWWGG | 6 cut(s) | 1680, 1973, 2225, 3076, 3175, 3639 |
| Bst1107I | GTATAC | 2 cut(s) | 847, 887 |
| Bst2BI | CACGAG | 1 cut(s) | 792 |
| Bst2UI | CCWGG | 4 cut(s) | 698, 834, 2004, 3751 |
| Bst6I | CTCTTC | 5 cut(s) | 477, 1052, 1405, 3639, 3922 |
| BstACI | GRCGYC | 2 cut(s) | 3082, 3597 |
| BstAFI | CTTAAG | 1 cut(s) | 3146 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 596, 2519, 2735, 3689 |
| BstAUI | TGTACA | 1 cut(s) | 391 |
| BstBAI | YACGTR | 1 cut(s) | 2279 |
| BstDSI | CCRYGG | 2 cut(s) | 1973, 3175 |
| BstFNI | CGCG | 5 cut(s) | 194, 2715, 2890, 3051, 3410 |
| BstHHI | GCGC | 4 cut(s) | 611, 2717, 2878, 2890 |
| BstMAI | GTCTC | 6 cut(s) | 644, 2568, 2655, 2978, 3301, 3636 |
| BstMCI | CGRYCG | 1 cut(s) | 2262 |
| BstNI | CCWGG | 4 cut(s) | 698, 834, 2004, 3751 |
| BstNSI | RCATGY | 2 cut(s) | 842, 1751 |
| BstSCI | CCNGG | 8 cut(s) | 696, 832, 849, 2002, 3648, 3749, 3853, 3854 |
| BstSLI | GKGCMC | 3 cut(s) | 1336, 1845, 2000 |
| BstUI | CGCG | 5 cut(s) | 194, 2715, 2890, 3051, 3410 |
| BstV2I | GAAGAC | 4 cut(s) | 144, 751, 1190, 3777 |
| BstX2I | RGATCY | 7 cut(s) | 524, 1585, 1969, 2537, 2635, 3725, 3888 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3197 |
| BstYI | RGATCY | 7 cut(s) | 524, 1585, 1969, 2537, 2635, 3725, 3888 |
| BstZ17I | GTATAC | 2 cut(s) | 847, 887 |
| Bsu15I | ATCGAT | 1 cut(s) | 3732 |
| BsuI | GTATCC | 1 cut(s) | 1237 |
| BsuRI | GGCC | 9 cut(s) | 565, 801, 1872, 1922, 1978, 1998, 2781, 3715, 3916 |
| BsuTUI | ATCGAT | 1 cut(s) | 3732 |
| BtgI | CCRYGG | 2 cut(s) | 1973, 3175 |
| BtgZI | GCGATG | 1 cut(s) | 2905 |
| BtsI | GCAGTG | 3 cut(s) | 1957, 2782, 3108 |
| BtsIMutI | CAGTG | 7 cut(s) | 1845, 1915, 1957, 2782, 3100, 3108, 3591 |
| BveI | ACCTGC | 1 cut(s) | 2987 |
| CaiI | CAGNNNCTG | 2 cut(s) | 206, 2381 |
| CfoI | GCGC | 4 cut(s) | 611, 2717, 2878, 2890 |
| Cfr10I | RCCGGY | 1 cut(s) | 1570 |
| Cfr13I | GGNCC | 8 cut(s) | 719, 800, 980, 1920, 1996, 1997, 2182, 3713 |
| Cfr9I | CCCGGG | 1 cut(s) | 3854 |
| ClaI | ATCGAT | 1 cut(s) | 3732 |
| CseI | GACGC | 6 cut(s) | 183, 1184, 2591, 3090, 3416, 3605 |
| CspAI | ACCGGT | 1 cut(s) | 1570 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1009 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1009 |
| EaeI | YGGCCR | 3 cut(s) | 1870, 1976, 2779 |
| Eam1104I | CTCTTC | 5 cut(s) | 477, 1052, 1405, 3639, 3922 |
| EarI | CTCTTC | 5 cut(s) | 477, 1052, 1405, 3639, 3922 |
| EciI | GGCGGA | 1 cut(s) | 3511 |
| Eco130I | CCWWGG | 6 cut(s) | 1680, 1973, 2225, 3076, 3175, 3639 |
| Eco24I | GRGCYC | 1 cut(s) | 2000 |
| Eco31I | GGTCTC | 1 cut(s) | 2568 |
| Eco32I | GATATC | 3 cut(s) | 454, 3169, 3490 |
| Eco47I | GGWCC | 3 cut(s) | 719, 980, 2182 |
| Eco57I | CTGAAG | 4 cut(s) | 458, 1076, 2108, 3293 |
| Eco72I | CACGTG | 1 cut(s) | 2279 |
| Eco88I | CYCGRG | 3 cut(s) | 1581, 2337, 3854 |
| EcoO109I | RGGNCCY | 4 cut(s) | 800, 980, 1996, 1997 |
| EcoRII | CCWGG | 4 cut(s) | 696, 832, 2002, 3749 |
| EcoRV | GATATC | 3 cut(s) | 454, 3169, 3490 |
| EcoT14I | CCWWGG | 6 cut(s) | 1680, 1973, 2225, 3076, 3175, 3639 |
| EcoT22I | ATGCAT | 3 cut(s) | 1932, 3039, 3553 |
| EcoT38I | GRGCYC | 1 cut(s) | 2000 |
| ErhI | CCWWGG | 6 cut(s) | 1680, 1973, 2225, 3076, 3175, 3639 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 3069, 3101 |
| FaqI | GGGAC | 2 cut(s) | 2401, 3772 |
| FauI | CCCGC | 2 cut(s) | 818, 3858 |
| FbaI | TGATCA | 1 cut(s) | 3588 |
| FblI | GTMKAC | 3 cut(s) | 846, 886, 3405 |
| FriOI | GRGCYC | 1 cut(s) | 2000 |
| FspBI | CTAG | 9 cut(s) | 443, 741, 957, 1797, 2408, 2432, 2993, 3666, 3693 |
| FspI | TGCGCA | 1 cut(s) | 610 |
| GlaI | GCGC | 4 cut(s) | 610, 2716, 2877, 2889 |
| GsaI | CCCAGC | 1 cut(s) | 1762 |
| GsuI | CTGGAG | 2 cut(s) | 1238, 1986 |
| HaeIII | GGCC | 9 cut(s) | 565, 801, 1872, 1922, 1978, 1998, 2781, 3715, 3916 |
| HapII | CCGG | 6 cut(s) | 850, 939, 1571, 3493, 3650, 3855 |
| HgaI | GACGC | 6 cut(s) | 183, 1184, 2591, 3090, 3416, 3605 |
| HhaI | GCGC | 4 cut(s) | 611, 2717, 2878, 2890 |
| Hin1I | GRCGYC | 2 cut(s) | 3082, 3597 |
| Hin6I | GCGC | 4 cut(s) | 609, 2715, 2876, 2888 |
| HinP1I | GCGC | 4 cut(s) | 609, 2715, 2876, 2888 |
| HincII | GTYRAC | 4 cut(s) | 76, 198, 2551, 3018 |
| HindII | GTYRAC | 4 cut(s) | 76, 198, 2551, 3018 |
| HindIII | AAGCTT | 3 cut(s) | 1670, 1885, 2844 |
| HpaI | GTTAAC | 2 cut(s) | 76, 3018 |
| HpaII | CCGG | 6 cut(s) | 850, 939, 1571, 3493, 3650, 3855 |
| HphI | GGTGA | 6 cut(s) | 109, 571, 938, 2918, 3505, 3550 |
| Hpy99I | CGWCG | 3 cut(s) | 151, 2267, 2834 |
| HpyAV | CCTTC | 9 cut(s) | 5, 344, 993, 1378, 1511, 2256, 2666, 3069, 3816 |
| HpyCH4IV | ACGT | 4 cut(s) | 486, 1184, 2278, 3427 |
| HpySE526I | ACGT | 4 cut(s) | 486, 1184, 2278, 3427 |
| Hsp92I | GRCGYC | 2 cut(s) | 3082, 3597 |
| HspAI | GCGC | 4 cut(s) | 609, 2715, 2876, 2888 |
| KpnI | GGTACC | 1 cut(s) | 3665 |
| Ksp22I | TGATCA | 1 cut(s) | 3588 |
| KspAI | GTTAAC | 2 cut(s) | 76, 3018 |
| LguI | GCTCTTC | 1 cut(s) | 477 |
| MaeI | CTAG | 9 cut(s) | 443, 741, 957, 1797, 2408, 2432, 2993, 3666, 3693 |
| MaeII | ACGT | 4 cut(s) | 486, 1184, 2278, 3427 |
| MaeIII | GTNAC | 7 cut(s) | 97, 301, 418, 769, 1124, 1210, 2595 |
| MbiI | CCGCTC | 1 cut(s) | 1270 |
| MfeI | CAATTG | 1 cut(s) | 864 |
| MflI | RGATCY | 7 cut(s) | 524, 1585, 1969, 2537, 2635, 3725, 3888 |
| MhlI | GDGCHC | 6 cut(s) | 337, 1336, 1845, 2000, 2245, 3791 |
| MlsI | TGGCCA | 2 cut(s) | 1872, 1978 |
| MluI | ACGCGT | 2 cut(s) | 192, 3408 |
| MluNI | TGGCCA | 2 cut(s) | 1872, 1978 |
| MlyI | GAGTC | 6 cut(s) | 374, 458, 1106, 1625, 1825, 3638 |
| MmeI | TCCRAC | 6 cut(s) | 310, 348, 830, 1597, 2836, 3029 |
| Mox20I | TGGCCA | 2 cut(s) | 1872, 1978 |
| Mph1103I | ATGCAT | 3 cut(s) | 1932, 3039, 3553 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2985 |
| MscI | TGGCCA | 2 cut(s) | 1872, 1978 |
| MslI | CAYNNNNRTG | 6 cut(s) | 249, 1530, 1611, 3195, 3440, 3734 |
| Msp20I | TGGCCA | 2 cut(s) | 1872, 1978 |
| MspA1I | CMGCKG | 3 cut(s) | 947, 1054, 1940 |
| MspCI | CTTAAG | 1 cut(s) | 3146 |
| MspI | CCGG | 6 cut(s) | 850, 939, 1571, 3493, 3650, 3855 |
| MspR9I | CCNGG | 8 cut(s) | 698, 834, 851, 2004, 3650, 3751, 3855, 3856 |
| MunI | CAATTG | 1 cut(s) | 864 |
| MvaI | CCWGG | 4 cut(s) | 698, 834, 2004, 3751 |
| MvnI | CGCG | 5 cut(s) | 194, 2715, 2890, 3051, 3410 |
| NciI | CCSGG | 4 cut(s) | 851, 3650, 3855, 3856 |
| NcoI | CCATGG | 2 cut(s) | 1973, 3175 |
| NheI | GCTAGC | 1 cut(s) | 2992 |
| NlaIV | GGNNCC | 8 cut(s) | 375, 831, 943, 1998, 2953, 3654, 3663, 3890 |
| NmeAIII | GCCGAG | 2 cut(s) | 446, 591 |
| NmuCI | GTSAC | 3 cut(s) | 97, 769, 1210 |
| NsbI | TGCGCA | 1 cut(s) | 610 |
| NsiI | ATGCAT | 3 cut(s) | 1932, 3039, 3553 |
| NspI | RCATGY | 2 cut(s) | 842, 1751 |
| PaeI | GCATGC | 1 cut(s) | 1751 |
| PaeR7I | CTCGAG | 2 cut(s) | 1581, 2337 |
| PciSI | GCTCTTC | 1 cut(s) | 477 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 563 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2985 |
| Pfl23II | CGTACG | 1 cut(s) | 2198 |
| PflFI | GACNNNGTC | 2 cut(s) | 364, 704 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3809 |
| PfoI | TCCNGGA | 1 cut(s) | 2002 |
| PinAI | ACCGGT | 1 cut(s) | 1570 |
| PleI | GAGTC | 6 cut(s) | 373, 458, 1106, 1625, 1825, 3637 |
| PmaCI | CACGTG | 1 cut(s) | 2279 |
| PmlI | CACGTG | 1 cut(s) | 2279 |
| PpsI | GAGTC | 6 cut(s) | 373, 458, 1106, 1625, 1825, 3637 |
| Ppu21I | YACGTR | 1 cut(s) | 2279 |
| PpuMI | RGGWCCY | 1 cut(s) | 980 |
| PsiI | TTATAA | 1 cut(s) | 2112 |
| Psp5II | RGGWCCY | 1 cut(s) | 980 |
| Psp6I | CCWGG | 4 cut(s) | 696, 832, 2002, 3749 |
| PspCI | CACGTG | 1 cut(s) | 2279 |
| PspFI | CCCAGC | 1 cut(s) | 1758 |
| PspGI | CCWGG | 4 cut(s) | 696, 832, 2002, 3749 |
| PspLI | CGTACG | 1 cut(s) | 2198 |
| PspN4I | GGNNCC | 8 cut(s) | 375, 831, 943, 1998, 2953, 3654, 3663, 3890 |
| PspOMI | GGGCCC | 1 cut(s) | 1996 |
| PspPI | GGNCC | 8 cut(s) | 719, 800, 980, 1920, 1996, 1997, 2182, 3713 |
| PspPPI | RGGWCCY | 1 cut(s) | 980 |
| PspXI | VCTCGAGB | 1 cut(s) | 2337 |
| PstI | CTGCAG | 3 cut(s) | 1939, 2515, 3330 |
| PstNI | CAGNNNCTG | 2 cut(s) | 206, 2381 |
| PsuI | RGATCY | 7 cut(s) | 524, 1585, 1969, 2537, 2635, 3725, 3888 |
| PsyI | GACNNNGTC | 2 cut(s) | 364, 704 |
| PvuII | CAGCTG | 2 cut(s) | 1054, 1940 |
| RseI | CAYNNNNRTG | 6 cut(s) | 249, 1530, 1611, 3195, 3440, 3734 |
| SapI | GCTCTTC | 1 cut(s) | 477 |
| Sau96I | GGNCC | 8 cut(s) | 719, 800, 980, 1920, 1996, 1997, 2182, 3713 |
| SchI | GAGTC | 6 cut(s) | 374, 458, 1106, 1625, 1825, 3638 |
| ScrFI | CCNGG | 8 cut(s) | 698, 834, 851, 2004, 3650, 3751, 3855, 3856 |
| SduI | GDGCHC | 6 cut(s) | 337, 1336, 1845, 2000, 2245, 3791 |
| Sfr274I | CTCGAG | 2 cut(s) | 1581, 2337 |
| SinI | GGWCC | 3 cut(s) | 719, 980, 2182 |
| SlaI | CTCGAG | 2 cut(s) | 1581, 2337 |
| SmaI | CCCGGG | 1 cut(s) | 3856 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 249, 1530, 1611, 3195, 3440, 3734 |
| SphI | GCATGC | 1 cut(s) | 1751 |
| SsiI | CCGC | 6 cut(s) | 825, 945, 1270, 1923, 3496, 3851 |
| SspI | AATATT | 1 cut(s) | 2143 |
| SspMI | CTAG | 9 cut(s) | 443, 741, 957, 1797, 2408, 2432, 2993, 3666, 3693 |
| StyD4I | CCNGG | 8 cut(s) | 696, 832, 849, 2002, 3648, 3749, 3853, 3854 |
| StyI | CCWWGG | 6 cut(s) | 1680, 1973, 2225, 3076, 3175, 3639 |
| TaiI | ACGT | 4 cut(s) | 489, 1187, 2281, 3430 |
| TaqII | GACCGA | 1 cut(s) | 2276 |
| TatI | WGTACW | 4 cut(s) | 391, 1346, 2896, 3249 |
| TauI | GCSGC | 1 cut(s) | 1925 |
| TscAI | CASTG | 7 cut(s) | 1845, 1922, 1957, 2782, 3100, 3115, 3598 |
| TseFI | GTSAC | 3 cut(s) | 97, 769, 1210 |
| Tsp45I | GTSAC | 3 cut(s) | 97, 769, 1210 |
| TspGWI | ACGGA | 3 cut(s) | 263, 377, 3104 |
| TspMI | CCCGGG | 1 cut(s) | 3854 |
| TspRI | CASTG | 7 cut(s) | 1845, 1922, 1957, 2782, 3100, 3115, 3598 |
| Tth111I | GACNNNGTC | 2 cut(s) | 364, 704 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3809 |
| Vha464I | CTTAAG | 1 cut(s) | 3146 |
| VpaK11BI | GGWCC | 3 cut(s) | 719, 980, 2182 |
| XapI | RAATTY | 6 cut(s) | 751, 1042, 1133, 2427, 3814, 3904 |
| XceI | RCATGY | 2 cut(s) | 842, 1751 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1613 |
| XhoI | CTCGAG | 2 cut(s) | 1581, 2337 |
| XmaI | CCCGGG | 1 cut(s) | 3854 |
| XmiI | GTMKAC | 3 cut(s) | 846, 886, 3405 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2985 |
| XspI | CTAG | 9 cut(s) | 443, 741, 957, 1797, 2408, 2432, 2993, 3666, 3693 |
| Zsp2I | ATGCAT | 3 cut(s) | 1932, 3039, 3553 |