AAA domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G19120 AT4G30100 AT4G30100 |
| fragaria_vesca | FvH4_5g37860 FvH4_5g37860 FvH4_5g37860 FvH4_5g37860 FvH4_5g37860 FvH4_5g37860 FvH4_5g37860 FvH4_5g37860 FvH4_5g37860 FvH4_5g37860 FvH4_5g37860 FvH4_5g37860 FvH4_5g37860 FvH4_5g37860 FvH4_5g37860 FvH4_5g37860 FvH4_5g37860 |
| malus_domestica | MD08G1179700.v1.1 MD15G1364900.v1.1 |
| prunus_persica | Prupe.1G513000_v2.0.a1 Prupe.1G513000_v2.0.a1 Prupe.1G513000_v2.0.a1 |
| pyrus_communis | pycom08g15390 pycom13g22410 pycom15g32730 |
| rosa_chinensis | RchiOBHm_Chr7g0239841 |
| rosa_laevigata | RLG00000000726 |
| rosa_multiflora | Rmu_sc0000540.1_g000065 Rmu_sc0018325.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00220770 |
| rosa_rugosa | Rorug07G0329900 Rorug07G0330000 |
| rosa_samantha | Rh7AG483900 Rh7BG456900 Rh7CG501400 Rh7DG469600 |
| rosa_wichuraiana | Rw7G040590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 3817 |
| AccB1I | GGYRCC | 1 cut(s) | 3817 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 673, 1583 |
| AccBSI | CCGCTC | 1 cut(s) | 2554 |
| AccI | GTMKAC | 2 cut(s) | 962, 4081 |
| AccII | CGCG | 2 cut(s) | 939, 2529 |
| AclI | AACGTT | 1 cut(s) | 2208 |
| AcsI | RAATTY | 9 cut(s) | 224, 1183, 1854, 1933, 2029, 3459, 3532, 3809, 4021 |
| AcuI | CTGAAG | 8 cut(s) | 144, 261, 435, 1199, 1509, 1943, 2321, 3491 |
| AcvI | CACGTG | 1 cut(s) | 3919 |
| AcyI | GRCGYC | 1 cut(s) | 3247 |
| AdeI | CACNNNGTG | 3 cut(s) | 2191, 2193, 3059 |
| AflII | CTTAAG | 1 cut(s) | 2252 |
| AflIII | ACRYGT | 2 cut(s) | 937, 1293 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1129, 1161, 3682, 3714, 3814, 3846 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 4081, 4113 |
| Alw26I | GTCTC | 6 cut(s) | 551, 1361, 2820, 3281, 3376, 3788 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 2108, 2684, 3777 |
| Ama87I | CYCGRG | 3 cut(s) | 9, 2502, 2736 |
| AoxI | GGCC | 9 cut(s) | 17, 218, 838, 1637, 2088, 2141, 2489, 3583, 3998 |
| ApoI | RAATTY | 9 cut(s) | 224, 1183, 1854, 1933, 2029, 3459, 3532, 3809, 4021 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 3460, 3856 |
| Asp718I | GGTACC | 1 cut(s) | 3817 |
| AspLEI | GCGC | 2 cut(s) | 2408, 2531 |
| AsuC2I | CCSGG | 1 cut(s) | 1454 |
| AsuHPI | GGTGA | 4 cut(s) | 1349, 2483, 3715, 4061 |
| AsuNHI | GCTAGC | 1 cut(s) | 2071 |
| AvaI | CYCGRG | 3 cut(s) | 9, 2502, 2736 |
| BaeGI | GKGCMC | 1 cut(s) | 1459 |
| BanI | GGYRCC | 1 cut(s) | 3817 |
| BanII | GRGCYC | 1 cut(s) | 3697 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1557, 1589 |
| BauI | CACGAG | 3 cut(s) | 1749, 2877, 3681 |
| BbrPI | CACGTG | 1 cut(s) | 3919 |
| BbsI | GAAGAC | 1 cut(s) | 871 |
| BbvCI | CCTCAGC | 2 cut(s) | 1677, 3078 |
| BceAI | ACGGC | 1 cut(s) | 1911 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 392, 426, 1904, 1938 |
| BclI | TGATCA | 5 cut(s) | 586, 592, 1822, 2038, 4039 |
| BcnI | CCSGG | 1 cut(s) | 1454 |
| BcoDI | GTCTC | 6 cut(s) | 551, 1361, 2820, 3281, 3376, 3788 |
| BfaI | CTAG | 7 cut(s) | 1083, 1500, 2072, 2391, 2804, 3927, 3981 |
| BfmI | CTRYAG | 5 cut(s) | 930, 1113, 1841, 2762, 2778 |
| BfrI | CTTAAG | 1 cut(s) | 2252 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2909 |
| BlpI | GCTNAGC | 1 cut(s) | 252 |
| BmcAI | AGTACT | 1 cut(s) | 2237 |
| BmeT110I | CYCGRG | 3 cut(s) | 9, 2502, 2736 |
| BmrI | ACTGGG | 1 cut(s) | 3751 |
| BmtI | GCTAGC | 1 cut(s) | 2075 |
| BmuI | ACTGGG | 1 cut(s) | 3751 |
| BpiI | GAAGAC | 1 cut(s) | 871 |
| BpmI | CTGGAG | 2 cut(s) | 492, 495 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1677, 3078 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 252 |
| BpuEI | CTTGAG | 3 cut(s) | 533, 1206, 2909 |
| BpuMI | CCSGG | 1 cut(s) | 1454 |
| Bsa29I | ATCGAT | 2 cut(s) | 1233, 1743 |
| BsaAI | YACGTR | 2 cut(s) | 1296, 3919 |
| BsaBI | GATNNNNATC | 3 cut(s) | 273, 591, 1821 |
| BsaHI | GRCGYC | 1 cut(s) | 3247 |
| BsaI | GGTCTC | 1 cut(s) | 3281 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 468, 498, 907, 937, 999, 1029 |
| Bse118I | RCCGGY | 1 cut(s) | 3996 |
| Bse1I | ACTGG | 4 cut(s) | 326, 1026, 3012, 3746 |
| Bse3DI | GCAATG | 2 cut(s) | 2100, 2756 |
| Bse8I | GATNNNNATC | 3 cut(s) | 273, 591, 1821 |
| BseCI | ATCGAT | 2 cut(s) | 1233, 1743 |
| BseJI | GATNNNNATC | 3 cut(s) | 273, 591, 1821 |
| BseMI | GCAATG | 2 cut(s) | 2100, 2756 |
| BseMII | CTCAG | 5 cut(s) | 243, 1668, 2645, 2904, 3092 |
| BseNI | ACTGG | 4 cut(s) | 326, 1026, 3012, 3746 |
| BseRI | GAGGAG | 2 cut(s) | 1424, 1703 |
| BseSI | GKGCMC | 1 cut(s) | 1459 |
| BseYI | CCCAGC | 6 cut(s) | 778, 1893, 1964, 2067, 3113, 4103 |
| BsgI | GTGCAG | 4 cut(s) | 2243, 2663, 3036, 3209 |
| Bsh1236I | CGCG | 2 cut(s) | 939, 2529 |
| BshFI | GGCC | 9 cut(s) | 19, 220, 840, 1639, 2090, 2143, 2491, 3585, 4000 |
| BshNI | GGYRCC | 1 cut(s) | 3817 |
| BshVI | ATCGAT | 2 cut(s) | 1233, 1743 |
| BsiHKCI | CYCGRG | 3 cut(s) | 9, 2502, 2736 |
| BsiSI | CCGG | 3 cut(s) | 217, 1453, 3997 |
| BslFI | GGGAC | 7 cut(s) | 1024, 1802, 1984, 2753, 3130, 3337, 3840 |
| BsmAI | GTCTC | 6 cut(s) | 551, 1361, 2820, 3281, 3376, 3788 |
| BsmFI | GGGAC | 7 cut(s) | 1024, 1802, 1984, 2753, 3130, 3337, 3840 |
| BsmI | GAATGC | 4 cut(s) | 1454, 2021, 2205, 3718 |
| BsnI | GGCC | 9 cut(s) | 19, 220, 840, 1639, 2090, 2143, 2491, 3585, 4000 |
| Bso31I | GGTCTC | 1 cut(s) | 3281 |
| BsoBI | CYCGRG | 3 cut(s) | 9, 2502, 2736 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1459, 3697 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 252 |
| Bsp19I | CCATGG | 3 cut(s) | 648, 667, 2138 |
| BspANI | GGCC | 9 cut(s) | 19, 220, 840, 1639, 2090, 2143, 2491, 3585, 4000 |
| BspCNI | CTCAG | 5 cut(s) | 244, 1669, 2644, 2905, 3091 |
| BspDI | ATCGAT | 2 cut(s) | 1233, 1743 |
| BspFNI | CGCG | 2 cut(s) | 939, 2529 |
| BspHI | TCATGA | 1 cut(s) | 589 |
| BspMAI | CTGCAG | 2 cut(s) | 1117, 2766 |
| BspOI | GCTAGC | 1 cut(s) | 2075 |
| BspT107I | GGYRCC | 1 cut(s) | 3817 |
| BspTI | CTTAAG | 1 cut(s) | 2252 |
| BspTNI | GGTCTC | 1 cut(s) | 3281 |
| BsrBI | CCGCTC | 1 cut(s) | 2554 |
| BsrDI | GCAATG | 2 cut(s) | 2100, 2756 |
| BsrFI | RCCGGY | 1 cut(s) | 3996 |
| BsrI | ACTGG | 4 cut(s) | 326, 1026, 3012, 3746 |
| BssAI | RCCGGY | 1 cut(s) | 3996 |
| BssNAI | GTATAC | 1 cut(s) | 4082 |
| BssNI | GRCGYC | 1 cut(s) | 3247 |
| BssSI | CACGAG | 3 cut(s) | 1749, 2877, 3681 |
| BssT1I | CCWWGG | 8 cut(s) | 648, 667, 2138, 2698, 3241, 3580, 3893, 4026 |
| Bst1107I | GTATAC | 1 cut(s) | 4082 |
| Bst2BI | CACGAG | 3 cut(s) | 1749, 2877, 3681 |
| Bst6I | CTCTTC | 4 cut(s) | 54, 740, 1266, 3804 |
| BstACI | GRCGYC | 1 cut(s) | 3247 |
| BstAFI | CTTAAG | 1 cut(s) | 2252 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 146, 716, 1916, 2684, 2900 |
| BstBAI | YACGTR | 2 cut(s) | 1296, 3919 |
| BstC8I | GCNNGC | 8 cut(s) | 132, 834, 838, 1209, 1917, 2073, 3159, 3621 |
| BstDSI | CCRYGG | 4 cut(s) | 648, 667, 2138, 2455 |
| BstEII | GGTNACC | 1 cut(s) | 1333 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2172 |
| BstFNI | CGCG | 2 cut(s) | 939, 2529 |
| BstHHI | GCGC | 2 cut(s) | 2408, 2531 |
| BstMAI | GTCTC | 6 cut(s) | 551, 1361, 2820, 3281, 3376, 3788 |
| BstNSI | RCATGY | 1 cut(s) | 1919 |
| BstPI | GGTNACC | 1 cut(s) | 1333 |
| BstSFI | CTRYAG | 5 cut(s) | 930, 1113, 1841, 2762, 2778 |
| BstSLI | GKGCMC | 1 cut(s) | 1459 |
| BstUI | CGCG | 2 cut(s) | 939, 2529 |
| BstV2I | GAAGAC | 1 cut(s) | 871 |
| BstX2I | RGATCY | 6 cut(s) | 407, 1652, 2134, 3073, 3365, 3550 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3019 |
| BstYI | RGATCY | 6 cut(s) | 407, 1652, 2134, 3073, 3365, 3550 |
| BstZ17I | GTATAC | 1 cut(s) | 4082 |
| Bsu15I | ATCGAT | 2 cut(s) | 1233, 1743 |
| BsuRI | GGCC | 9 cut(s) | 19, 220, 840, 1639, 2090, 2143, 2491, 3585, 4000 |
| BsuTUI | ATCGAT | 2 cut(s) | 1233, 1743 |
| BtgI | CCRYGG | 4 cut(s) | 648, 667, 2138, 2455 |
| BtgZI | GCGATG | 1 cut(s) | 1626 |
| BtsI | GCAGTG | 2 cut(s) | 1910, 2947 |
| Cac8I | GCNNGC | 8 cut(s) | 132, 834, 838, 1209, 1917, 2073, 3159, 3621 |
| CaiI | CAGNNNCTG | 3 cut(s) | 2108, 2684, 3777 |
| CciI | TCATGA | 1 cut(s) | 589 |
| CfoI | GCGC | 2 cut(s) | 2408, 2531 |
| Cfr10I | RCCGGY | 1 cut(s) | 3996 |
| ClaI | ATCGAT | 2 cut(s) | 1233, 1743 |
| CseI | GACGC | 2 cut(s) | 1307, 3255 |
| DraIII | CACNNNGTG | 3 cut(s) | 2191, 2193, 3059 |
| Eam1104I | CTCTTC | 4 cut(s) | 54, 740, 1266, 3804 |
| EarI | CTCTTC | 4 cut(s) | 54, 740, 1266, 3804 |
| EciI | GGCGGA | 1 cut(s) | 3647 |
| Eco130I | CCWWGG | 8 cut(s) | 648, 667, 2138, 2698, 3241, 3580, 3893, 4026 |
| Eco147I | AGGCCT | 1 cut(s) | 1639 |
| Eco24I | GRGCYC | 1 cut(s) | 3697 |
| Eco31I | GGTCTC | 1 cut(s) | 3281 |
| Eco57I | CTGAAG | 8 cut(s) | 144, 261, 435, 1199, 1509, 1943, 2321, 3491 |
| Eco72I | CACGTG | 1 cut(s) | 3919 |
| Eco88I | CYCGRG | 3 cut(s) | 9, 2502, 2736 |
| Eco91I | GGTNACC | 1 cut(s) | 1333 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2172 |
| EcoO109I | RGGNCCY | 4 cut(s) | 2162, 3117, 3301, 3827 |
| EcoO65I | GGTNACC | 1 cut(s) | 1333 |
| EcoRI | GAATTC | 3 cut(s) | 1183, 3532, 4021 |
| EcoT14I | CCWWGG | 8 cut(s) | 648, 667, 2138, 2698, 3241, 3580, 3893, 4026 |
| EcoT22I | ATGCAT | 5 cut(s) | 1921, 2100, 2610, 2758, 3204 |
| EcoT38I | GRGCYC | 1 cut(s) | 3697 |
| ErhI | CCWWGG | 8 cut(s) | 648, 667, 2138, 2698, 3241, 3580, 3893, 4026 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 3234, 3266 |
| FaqI | GGGAC | 7 cut(s) | 1024, 1802, 1984, 2753, 3130, 3337, 3840 |
| FauI | CCCGC | 4 cut(s) | 1890, 2534, 3097, 3339 |
| FauNDI | CATATG | 2 cut(s) | 421, 1512 |
| FbaI | TGATCA | 5 cut(s) | 586, 592, 1822, 2038, 4039 |
| FblI | GTMKAC | 2 cut(s) | 962, 4081 |
| FriOI | GRGCYC | 1 cut(s) | 3697 |
| FspBI | CTAG | 7 cut(s) | 1083, 1500, 2072, 2391, 2804, 3927, 3981 |
| GlaI | GCGC | 2 cut(s) | 2407, 2530 |
| GsaI | CCCAGC | 6 cut(s) | 782, 1897, 1968, 2071, 3117, 4107 |
| GsuI | CTGGAG | 2 cut(s) | 492, 495 |
| HaeIII | GGCC | 9 cut(s) | 19, 220, 840, 1639, 2090, 2143, 2491, 3585, 4000 |
| HapII | CCGG | 3 cut(s) | 217, 1453, 3997 |
| HgaI | GACGC | 2 cut(s) | 1307, 3255 |
| HhaI | GCGC | 2 cut(s) | 2408, 2531 |
| Hin1I | GRCGYC | 1 cut(s) | 3247 |
| Hin6I | GCGC | 2 cut(s) | 2406, 2529 |
| HinP1I | GCGC | 2 cut(s) | 2406, 2529 |
| HincII | GTYRAC | 1 cut(s) | 963 |
| HindII | GTYRAC | 1 cut(s) | 963 |
| HpaII | CCGG | 3 cut(s) | 217, 1453, 3997 |
| HphI | GGTGA | 4 cut(s) | 1349, 2483, 3715, 4061 |
| Hpy166II | GTNNAC | 4 cut(s) | 963, 1596, 2366, 4082 |
| Hpy8I | GTNNAC | 4 cut(s) | 963, 1596, 2366, 4082 |
| Hpy99I | CGWCG | 1 cut(s) | 3175 |
| HpyCH4IV | ACGT | 5 cut(s) | 572, 790, 1295, 2208, 3918 |
| HpySE526I | ACGT | 5 cut(s) | 572, 790, 1295, 2208, 3918 |
| Hsp92I | GRCGYC | 1 cut(s) | 3247 |
| HspAI | GCGC | 2 cut(s) | 2406, 2529 |
| KpnI | GGTACC | 1 cut(s) | 3821 |
| Ksp22I | TGATCA | 5 cut(s) | 586, 592, 1822, 2038, 4039 |
| LmnI | GCTCC | 6 cut(s) | 364, 1690, 1763, 2413, 2699, 2809 |
| MaeI | CTAG | 7 cut(s) | 1083, 1500, 2072, 2391, 2804, 3927, 3981 |
| MaeII | ACGT | 5 cut(s) | 572, 790, 1295, 2208, 3918 |
| MaeIII | GTNAC | 5 cut(s) | 886, 954, 1216, 1289, 1333 |
| MbiI | CCGCTC | 1 cut(s) | 2554 |
| MfeI | CAATTG | 1 cut(s) | 2322 |
| MflI | RGATCY | 6 cut(s) | 407, 1652, 2134, 3073, 3365, 3550 |
| MhlI | GDGCHC | 2 cut(s) | 1459, 3697 |
| MluI | ACGCGT | 1 cut(s) | 937 |
| MlyI | GAGTC | 4 cut(s) | 1031, 1784, 3359, 3790 |
| MmeI | TCCRAC | 4 cut(s) | 466, 3049, 3194, 4093 |
| Mph1103I | ATGCAT | 5 cut(s) | 1921, 2100, 2610, 2758, 3204 |
| MroXI | GAANNNNTTC | 2 cut(s) | 3460, 3856 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1166, 1779 |
| MspA1I | CMGCKG | 7 cut(s) | 143, 1177, 1676, 1897, 2108, 2681, 2777 |
| MspCI | CTTAAG | 1 cut(s) | 2252 |
| MspI | CCGG | 3 cut(s) | 217, 1453, 3997 |
| MunI | CAATTG | 1 cut(s) | 2322 |
| Mva1269I | GAATGC | 4 cut(s) | 1454, 2021, 2205, 3718 |
| MvnI | CGCG | 2 cut(s) | 939, 2529 |
| NciI | CCSGG | 1 cut(s) | 1454 |
| NcoI | CCATGG | 3 cut(s) | 648, 667, 2138 |
| NdeI | CATATG | 2 cut(s) | 421, 1512 |
| NheI | GCTAGC | 1 cut(s) | 2071 |
| NmeAIII | GCCGAG | 2 cut(s) | 73, 427 |
| NmuCI | GTSAC | 2 cut(s) | 954, 1216 |
| NsiI | ATGCAT | 5 cut(s) | 1921, 2100, 2610, 2758, 3204 |
| NspI | RCATGY | 1 cut(s) | 1919 |
| PaeI | GCATGC | 1 cut(s) | 1919 |
| PaeR7I | CTCGAG | 2 cut(s) | 9, 2502 |
| PagI | TCATGA | 1 cut(s) | 589 |
| PasI | CCCWGGG | 1 cut(s) | 1361 |
| PceI | AGGCCT | 1 cut(s) | 1639 |
| PctI | GAATGC | 4 cut(s) | 1454, 2021, 2205, 3718 |
| PdmI | GAANNNNTTC | 2 cut(s) | 3460, 3856 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 673, 1583 |
| PfoI | TCCNGGA | 1 cut(s) | 2167 |
| PleI | GAGTC | 4 cut(s) | 1030, 1784, 3358, 3790 |
| PmaCI | CACGTG | 1 cut(s) | 3919 |
| PmlI | CACGTG | 1 cut(s) | 3919 |
| PpsI | GAGTC | 4 cut(s) | 1030, 1784, 3358, 3790 |
| Ppu21I | YACGTR | 2 cut(s) | 1296, 3919 |
| PpuMI | RGGWCCY | 4 cut(s) | 2162, 3117, 3301, 3827 |
| Psp1406I | AACGTT | 1 cut(s) | 2208 |
| Psp5II | RGGWCCY | 4 cut(s) | 2162, 3117, 3301, 3827 |
| PspCI | CACGTG | 1 cut(s) | 3919 |
| PspEI | GGTNACC | 1 cut(s) | 1333 |
| PspFI | CCCAGC | 6 cut(s) | 778, 1893, 1964, 2067, 3113, 4103 |
| PspPPI | RGGWCCY | 4 cut(s) | 2162, 3117, 3301, 3827 |
| PspXI | VCTCGAGB | 1 cut(s) | 2502 |
| PstI | CTGCAG | 2 cut(s) | 1117, 2766 |
| PstNI | CAGNNNCTG | 3 cut(s) | 2108, 2684, 3777 |
| PsuI | RGATCY | 6 cut(s) | 407, 1652, 2134, 3073, 3365, 3550 |
| PvuII | CAGCTG | 6 cut(s) | 143, 1177, 1676, 2108, 2681, 2777 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1166, 1779 |
| SalI | GTCGAC | 1 cut(s) | 961 |
| ScaI | AGTACT | 1 cut(s) | 2237 |
| SchI | GAGTC | 4 cut(s) | 1031, 1784, 3359, 3790 |
| SduI | GDGCHC | 2 cut(s) | 1459, 3697 |
| SfcI | CTRYAG | 5 cut(s) | 930, 1113, 1841, 2762, 2778 |
| Sfr274I | CTCGAG | 2 cut(s) | 9, 2502 |
| SlaI | CTCGAG | 2 cut(s) | 9, 2502 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1166, 1779 |
| SmlI | CTYRAG | 6 cut(s) | 9, 548, 1221, 2252, 2502, 2888 |
| SmoI | CTYRAG | 6 cut(s) | 9, 548, 1221, 2252, 2502, 2888 |
| SphI | GCATGC | 1 cut(s) | 1919 |
| SseBI | AGGCCT | 1 cut(s) | 1639 |
| SspMI | CTAG | 7 cut(s) | 1083, 1500, 2072, 2391, 2804, 3927, 3981 |
| StuI | AGGCCT | 1 cut(s) | 1639 |
| StyI | CCWWGG | 8 cut(s) | 648, 667, 2138, 2698, 3241, 3580, 3893, 4026 |
| TaiI | ACGT | 5 cut(s) | 575, 793, 1298, 2211, 3921 |
| TaqI | TCGA | 6 cut(s) | 10, 962, 1233, 1743, 2503, 2749 |
| TatI | WGTACW | 2 cut(s) | 2235, 3307 |
| TauI | GCSGC | 3 cut(s) | 615, 2093, 3663 |
| TseFI | GTSAC | 2 cut(s) | 954, 1216 |
| Tsp45I | GTSAC | 2 cut(s) | 954, 1216 |
| TspGWI | ACGGA | 5 cut(s) | 65, 1511, 1645, 3203, 4002 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 673, 1583 |
| Vha464I | CTTAAG | 1 cut(s) | 2252 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2172 |
| XapI | RAATTY | 9 cut(s) | 224, 1183, 1854, 1933, 2029, 3459, 3532, 3809, 4021 |
| XbaI | TCTAGA | 1 cut(s) | 1499 |
| XceI | RCATGY | 1 cut(s) | 1919 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2705, 3811 |
| XhoI | CTCGAG | 2 cut(s) | 9, 2502 |
| XmiI | GTMKAC | 2 cut(s) | 962, 4081 |
| XmnI | GAANNNNTTC | 2 cut(s) | 3460, 3856 |
| XspI | CTAG | 7 cut(s) | 1083, 1500, 2072, 2391, 2804, 3927, 3981 |
| ZrmI | AGTACT | 1 cut(s) | 2237 |
| Zsp2I | ATGCAT | 5 cut(s) | 1921, 2100, 2610, 2758, 3204 |