AT4G30220

Small nuclear ribonucleoprotein F

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0010774
Physical Location & Seq
Reverse (-)
14802931 .. 14804461
1531 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G30220.1

Sequence Viewer

Length: 267 bp
ATGGCGACTATTCCGGTTAACCCGAAACCATTCTTGAACAACTTGACCGGCAAGACTGTTATCGTCAAGCTTAAATGGGGAATGGAATACAAAGGTTTTCTCGCCTCTGTTGACTCCTACATGAACTTGCAGCTGGGAAACACCGAAGAATATATTGATGGACAATTGACAGGGAACCTTGGAGAGATCTTGATCAGGTGCAACAATGTTTTGTATGTCCGTGGTGTGCCAGAAGATGAAGAGCTTGAAGACGCTGATCAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
LSM

Protein Analysis

88

Amino Acids

9.86

Weight (kDa)

4.36

Isoelectric Point (pI)

34.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 10 - 73 2.4e-23 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 37, 248
AluBI AGCT 3 cut(s) 70, 133, 244
AluI AGCT 3 cut(s) 70, 133, 244
ApeKI GCWGC 1 cut(s) 130
Asp700I GAANNNNTTC 1 cut(s) 29
BbsI GAAGAC 1 cut(s) 255
BbvI GCAGC 1 cut(s) 142
BccI CCATC 1 cut(s) 152
BclI TGATCA 2 cut(s) 192, 256
BglII AGATCT 1 cut(s) 186
BisI GCNGC 1 cut(s) 131
BlsI GCNGC 1 cut(s) 132
BmiI GGNNCC 1 cut(s) 176
BpiI GAAGAC 1 cut(s) 255
BsaBI GATNNNNATC 1 cut(s) 191
BsaJI CCNNGG 2 cut(s) 178, 220
BsaWI WCCGGW 1 cut(s) 13
Bse118I RCCGGY 1 cut(s) 47
Bse8I GATNNNNATC 1 cut(s) 191
BseDI CCNNGG 2 cut(s) 178, 220
BseJI GATNNNNATC 1 cut(s) 191
BseXI GCAGC 1 cut(s) 142
BseYI CCCAGC 1 cut(s) 133
BsiSI CCGG 2 cut(s) 14, 48
Bsp143I GATC 3 cut(s) 186, 192, 256
BspLI GGNNCC 1 cut(s) 176
BspQI GCTCTTC 1 cut(s) 234
BsrFI RCCGGY 1 cut(s) 47
BssAI RCCGGY 1 cut(s) 47
BssECI CCNNGG 2 cut(s) 178, 220
BssMI GATC 3 cut(s) 186, 192, 256
BssT1I CCWWGG 1 cut(s) 178
Bst4CI ACNGT 1 cut(s) 58
Bst6I CTCTTC 1 cut(s) 234
BstDSI CCRYGG 1 cut(s) 220
BstKTI GATC 3 cut(s) 189, 195, 259
BstMBI GATC 3 cut(s) 186, 192, 256
BstV1I GCAGC 1 cut(s) 142
BstV2I GAAGAC 1 cut(s) 255
BstX2I RGATCY 1 cut(s) 186
BstYI RGATCY 1 cut(s) 186
BtgI CCRYGG 1 cut(s) 220
Cfr10I RCCGGY 1 cut(s) 47
CseI GACGC 1 cut(s) 260
CviAII CATG 1 cut(s) 121
CviJI RGCY 3 cut(s) 70, 133, 244
CviKI_1 RGCY 3 cut(s) 70, 133, 244
DpnI GATC 3 cut(s) 188, 194, 258
DpnII GATC 3 cut(s) 186, 192, 256
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Eco130I CCWWGG 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 178
ErhI CCWWGG 1 cut(s) 178
FaeI CATG 1 cut(s) 124
FaiI YATR 3 cut(s) 122, 153, 216
FatI CATG 1 cut(s) 120
FbaI TGATCA 2 cut(s) 192, 256
Fnu4HI GCNGC 1 cut(s) 131
Fsp4HI GCNGC 1 cut(s) 131
GluI GCNGC 1 cut(s) 131
GsaI CCCAGC 1 cut(s) 137
HapII CCGG 2 cut(s) 14, 48
HgaI GACGC 1 cut(s) 260
Hin1II CATG 1 cut(s) 124
HincII GTYRAC 2 cut(s) 19, 112
HindII GTYRAC 2 cut(s) 19, 112
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 1 cut(s) 113
HpaI GTTAAC 1 cut(s) 19
HpaII CCGG 2 cut(s) 14, 48
Hpy166II GTNNAC 2 cut(s) 19, 112
Hpy188III TCNNGA 3 cut(s) 34, 190, 260
Hpy8I GTNNAC 2 cut(s) 19, 112
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4V TGCA 2 cut(s) 130, 201
Hsp92II CATG 1 cut(s) 124
Ksp22I TGATCA 2 cut(s) 192, 256
KspAI GTTAAC 1 cut(s) 19
Kzo9I GATC 3 cut(s) 186, 192, 256
LguI GCTCTTC 1 cut(s) 234
LpnPI CCDG 6 cut(s) 27, 61, 119, 156, 181, 243
Lsp1109I GCAGC 1 cut(s) 142
MalI GATC 3 cut(s) 188, 194, 258
MboI GATC 3 cut(s) 186, 192, 256
MboII GAAGA 4 cut(s) 158, 245, 251, 260
MfeI CAATTG 1 cut(s) 164
MflI RGATCY 1 cut(s) 186
MluCI AATT 1 cut(s) 164
MlyI GAGTC 1 cut(s) 107
MnlI CCTC 1 cut(s) 115
MroXI GAANNNNTTC 1 cut(s) 29
MseI TTAA 2 cut(s) 18, 72
MspA1I CMGCKG 1 cut(s) 133
MspI CCGG 2 cut(s) 14, 48
MunI CAATTG 1 cut(s) 164
NdeII GATC 3 cut(s) 186, 192, 256
NlaIII CATG 1 cut(s) 124
NlaIV GGNNCC 1 cut(s) 176
PciSI GCTCTTC 1 cut(s) 234
PdmI GAANNNNTTC 1 cut(s) 29
PkrI GCNGC 1 cut(s) 132
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
PspFI CCCAGC 1 cut(s) 133
PspN4I GGNNCC 1 cut(s) 176
PsuI RGATCY 1 cut(s) 186
PvuII CAGCTG 1 cut(s) 133
SapI GCTCTTC 1 cut(s) 234
SaqAI TTAA 2 cut(s) 18, 72
SatI GCNGC 1 cut(s) 131
Sau3AI GATC 3 cut(s) 186, 192, 256
SchI GAGTC 1 cut(s) 107
SetI ASST 6 cut(s) 72, 97, 135, 180, 200, 246
Sse9I AATT 1 cut(s) 164
StyI CCWWGG 1 cut(s) 178
TaaI ACNGT 1 cut(s) 58
TasI AATT 1 cut(s) 164
Tru1I TTAA 2 cut(s) 18, 72
Tru9I TTAA 2 cut(s) 18, 72
TseI GCWGC 1 cut(s) 130
TspDTI ATGAA 2 cut(s) 137, 252
TspGWI ACGGA 1 cut(s) 209
XmnI GAANNNNTTC 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.