FvH4_7g09330

Small nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0010774
Physical Location & Seq
Reverse (-)
8995104 .. 8995426
323 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g09330.t1

Sequence Viewer

Length: 273 bp
ATGGCTTCAATACCAGTTAACCCCAAACCATTCTTGAACAATCTGACCGGAAAGTCTGTGCTTGTGAAGCTTAAATGGGGAATGGAATACAAAGGTTTCCTTGTCACTGTGGATTCCTATATGAACTTGCAGCTTGCCAATACTGAAGAGTTTATCGATGGACAATTCACTGGAAATCTCGGAGAGATTTTGATCAGATGCAACAATGTTCTCTATCTTCGCGGGGTGCCGGAGGACGAAGGAATTGTTGATGCTCATCAGCAACAGGATTGA

Protein Analysis

91

Amino Acids

10.1

Weight (kDa)

4.78

Isoelectric Point (pI)

30.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 10 - 73 3.1e-22 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 52
AccB1I GGYRCC 1 cut(s) 226
AccII CGCG 1 cut(s) 222
AciI CCGC 1 cut(s) 222
AcuI CTGAAG 1 cut(s) 165
AgsI TTSAA 2 cut(s) 9, 37
AluBI AGCT 2 cut(s) 70, 133
AluI AGCT 2 cut(s) 70, 133
ApeKI GCWGC 1 cut(s) 130
BanI GGYRCC 1 cut(s) 226
BbvI GCAGC 1 cut(s) 142
BccI CCATC 1 cut(s) 152
BclI TGATCA 1 cut(s) 192
BisI GCNGC 1 cut(s) 131
BlsI GCNGC 1 cut(s) 132
BmiI GGNNCC 1 cut(s) 228
BmsI GCATC 2 cut(s) 188, 241
Bsa29I ATCGAT 1 cut(s) 156
BsaBI GATNNNNATC 2 cut(s) 191, 255
BsaWI WCCGGW 1 cut(s) 47
Bse1I ACTGG 2 cut(s) 14, 175
Bse8I GATNNNNATC 2 cut(s) 191, 255
BseCI ATCGAT 1 cut(s) 156
BseJI GATNNNNATC 2 cut(s) 191, 255
BseNI ACTGG 2 cut(s) 14, 175
BseXI GCAGC 1 cut(s) 142
Bsh1236I CGCG 1 cut(s) 222
BshNI GGYRCC 1 cut(s) 226
BshVI ATCGAT 1 cut(s) 156
BsiSI CCGG 2 cut(s) 48, 230
Bsp143I GATC 1 cut(s) 192
BspACI CCGC 1 cut(s) 222
BspDI ATCGAT 1 cut(s) 156
BspFNI CGCG 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 228
BspT107I GGYRCC 1 cut(s) 226
BsrI ACTGG 2 cut(s) 14, 175
BssMI GATC 1 cut(s) 192
Bst4CI ACNGT 1 cut(s) 109
Bst6I CTCTTC 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 135
BstFNI CGCG 1 cut(s) 222
BstKTI GATC 1 cut(s) 195
BstMBI GATC 1 cut(s) 192
BstMWI GCNNNNNNNGC 1 cut(s) 67
BstUI CGCG 1 cut(s) 222
BstV1I GCAGC 1 cut(s) 142
Bsu15I ATCGAT 1 cut(s) 156
BsuTUI ATCGAT 1 cut(s) 156
BtsIMutI CAGTG 2 cut(s) 105, 168
Cac8I GCNNGC 1 cut(s) 135
ClaI ATCGAT 1 cut(s) 156
CviJI RGCY 3 cut(s) 5, 70, 133
CviKI_1 RGCY 3 cut(s) 5, 70, 133
DpnI GATC 1 cut(s) 194
DpnII GATC 1 cut(s) 192
DrdI GACNNNNNNGTC 1 cut(s) 52
DseDI GACNNNNNNGTC 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
Eco57I CTGAAG 1 cut(s) 165
FaiI YATR 2 cut(s) 120, 122
FalI AAGNNNNNCTT 2 cut(s) 84, 116
FauI CCCGC 1 cut(s) 215
FbaI TGATCA 1 cut(s) 192
Fnu4HI GCNGC 1 cut(s) 131
Fsp4HI GCNGC 1 cut(s) 131
GluI GCNGC 1 cut(s) 131
HapII CCGG 2 cut(s) 48, 230
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 1 cut(s) 113
HpaI GTTAAC 1 cut(s) 19
HpaII CCGG 2 cut(s) 48, 230
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 3 cut(s) 45, 182, 197
Hpy188III TCNNGA 1 cut(s) 34
Hpy8I GTNNAC 1 cut(s) 19
HpyAV CCTTC 1 cut(s) 233
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4V TGCA 2 cut(s) 130, 201
HpyF10VI GCNNNNNNNGC 1 cut(s) 67
Ksp22I TGATCA 1 cut(s) 192
KspAI GTTAAC 1 cut(s) 19
Kzo9I GATC 1 cut(s) 192
LpnPI CCDG 5 cut(s) 27, 61, 156, 243, 251
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 2 cut(s) 188, 241
MaeIII GTNAC 1 cut(s) 103
MalI GATC 1 cut(s) 194
MboI GATC 1 cut(s) 192
MboII GAAGA 2 cut(s) 158, 209
MluCI AATT 2 cut(s) 164, 243
MnlI CCTC 1 cut(s) 226
MseI TTAA 2 cut(s) 18, 72
MspI CCGG 2 cut(s) 48, 230
MvnI CGCG 1 cut(s) 222
MwoI GCNNNNNNNGC 1 cut(s) 67
NdeII GATC 1 cut(s) 192
NlaIV GGNNCC 1 cut(s) 228
NmuCI GTSAC 1 cut(s) 103
PfeI GAWTC 1 cut(s) 113
PkrI GCNGC 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 228
SaqAI TTAA 2 cut(s) 18, 72
SatI GCNGC 1 cut(s) 131
Sau3AI GATC 1 cut(s) 192
SetI ASST 3 cut(s) 72, 97, 135
SfaNI GCATC 2 cut(s) 188, 241
Sse9I AATT 2 cut(s) 164, 243
SsiI CCGC 1 cut(s) 222
TaaI ACNGT 1 cut(s) 109
TaqI TCGA 1 cut(s) 156
TasI AATT 2 cut(s) 164, 243
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 2 cut(s) 18, 72
Tru9I TTAA 2 cut(s) 18, 72
TscAI CASTG 2 cut(s) 112, 175
TseFI GTSAC 1 cut(s) 103
TseI GCWGC 1 cut(s) 130
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 1 cut(s) 137
TspRI CASTG 2 cut(s) 112, 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.