Small nuclear ribonucleoprotein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G30220 AT4G30220 |
| fragaria_vesca | FvH4_5g33040 FvH4_7g09330 |
| malus_domestica | MD08G1247300.v1.1 MD13G1253400.v1.1 MD16G1257700.v1.1 |
| prunus_persica | Prupe.1G085500_v2.0.a1 Prupe.1G584000_v2.0.a1 Prupe.1G584000_v2.0.a1 |
| pyrus_communis | pycom08g21420 pycom13g22460 |
| rosa_chinensis | RchiOBHm_Chr7g0231121 |
| rosa_roxburghii | Rroxscaffold_3G00229470 |
| rosa_rugosa | Rorug07G0264800 |
| rosa_samantha | Rh7AG417600 Rh7BG393800 Rh7CG437600 Rh7DG411600 |
| rosa_wichuraiana | Rw7G034580 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 226 |
| AclI | AACGTT | 1 cut(s) | 207 |
| AcoI | YGGCCR | 2 cut(s) | 3, 135 |
| AfaI | GTAC | 1 cut(s) | 89 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 106, 223 |
| AgsI | TTSAA | 2 cut(s) | 37, 248 |
| AjnI | CCWGG | 1 cut(s) | 99 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 116, 148 |
| Alw26I | GTCTC | 1 cut(s) | 109 |
| AoxI | GGCC | 2 cut(s) | 3, 135 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 29 |
| BalI | TGGCCA | 2 cut(s) | 5, 137 |
| BanI | GGYRCC | 1 cut(s) | 226 |
| BccI | CCATC | 1 cut(s) | 152 |
| BciT130I | CCWGG | 1 cut(s) | 101 |
| BclI | TGATCA | 1 cut(s) | 192 |
| BcoDI | GTCTC | 1 cut(s) | 109 |
| Bme1390I | CCNGG | 1 cut(s) | 101 |
| BmiI | GGNNCC | 1 cut(s) | 228 |
| BmrFI | CCNGG | 1 cut(s) | 101 |
| BmsI | GCATC | 1 cut(s) | 241 |
| BsaBI | GATNNNNATC | 1 cut(s) | 191 |
| BsaI | GGTCTC | 1 cut(s) | 109 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 106, 223 |
| Bse1I | ACTGG | 2 cut(s) | 14, 52 |
| Bse8I | GATNNNNATC | 1 cut(s) | 191 |
| BseBI | CCWGG | 1 cut(s) | 101 |
| BseGI | GGATG | 1 cut(s) | 241 |
| BseJI | GATNNNNATC | 1 cut(s) | 191 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 106, 223 |
| BseNI | ACTGG | 2 cut(s) | 14, 52 |
| BshFI | GGCC | 2 cut(s) | 5, 137 |
| BshNI | GGYRCC | 1 cut(s) | 226 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 106, 223 |
| BsmAI | GTCTC | 1 cut(s) | 109 |
| BsnI | GGCC | 2 cut(s) | 5, 137 |
| Bso31I | GGTCTC | 1 cut(s) | 109 |
| Bsp143I | GATC | 1 cut(s) | 192 |
| BspANI | GGCC | 2 cut(s) | 5, 137 |
| BspLI | GGNNCC | 1 cut(s) | 228 |
| BspT107I | GGYRCC | 1 cut(s) | 226 |
| BspTNI | GGTCTC | 1 cut(s) | 109 |
| BsrI | ACTGG | 2 cut(s) | 14, 52 |
| BssMI | GATC | 1 cut(s) | 192 |
| Bst2UI | CCWGG | 1 cut(s) | 101 |
| Bst4CI | ACNGT | 1 cut(s) | 58 |
| BstF5I | GGATG | 1 cut(s) | 241 |
| BstKTI | GATC | 1 cut(s) | 195 |
| BstMAI | GTCTC | 1 cut(s) | 109 |
| BstMBI | GATC | 1 cut(s) | 192 |
| BstNI | CCWGG | 1 cut(s) | 101 |
| BstSCI | CCNGG | 1 cut(s) | 99 |
| BsuRI | GGCC | 2 cut(s) | 5, 137 |
| BtsCI | GGATG | 1 cut(s) | 241 |
| Csp6I | GTAC | 1 cut(s) | 88 |
| CviJI | RGCY | 2 cut(s) | 5, 137 |
| CviKI_1 | RGCY | 2 cut(s) | 5, 137 |
| CviQI | GTAC | 1 cut(s) | 88 |
| DpnI | GATC | 1 cut(s) | 194 |
| DpnII | GATC | 1 cut(s) | 192 |
| EaeI | YGGCCR | 2 cut(s) | 3, 135 |
| Eco31I | GGTCTC | 1 cut(s) | 109 |
| EcoRII | CCWGG | 1 cut(s) | 99 |
| FaiI | YATR | 3 cut(s) | 120, 122, 153 |
| FbaI | TGATCA | 1 cut(s) | 192 |
| FokI | GGATG | 1 cut(s) | 248 |
| HaeIII | GGCC | 2 cut(s) | 5, 137 |
| HincII | GTYRAC | 1 cut(s) | 19 |
| HindII | GTYRAC | 1 cut(s) | 19 |
| HinfI | GANTC | 1 cut(s) | 113 |
| HpaI | GTTAAC | 1 cut(s) | 19 |
| Hpy166II | GTNNAC | 1 cut(s) | 19 |
| Hpy188I | TCNGA | 2 cut(s) | 45, 197 |
| Hpy188III | TCNNGA | 1 cut(s) | 34 |
| Hpy8I | GTNNAC | 1 cut(s) | 19 |
| HpyAV | CCTTC | 1 cut(s) | 227 |
| HpyCH4III | ACNGT | 1 cut(s) | 58 |
| HpyCH4IV | ACGT | 1 cut(s) | 207 |
| HpyCH4V | TGCA | 2 cut(s) | 130, 271 |
| HpySE526I | ACGT | 1 cut(s) | 207 |
| Ksp22I | TGATCA | 1 cut(s) | 192 |
| KspAI | GTTAAC | 1 cut(s) | 19 |
| Kzo9I | GATC | 1 cut(s) | 192 |
| LpnPI | CCDG | 8 cut(s) | 27, 33, 86, 113, 156, 164, 243, 245 |
| LweI | GCATC | 1 cut(s) | 241 |
| MaeII | ACGT | 1 cut(s) | 207 |
| MaeIII | GTNAC | 1 cut(s) | 200 |
| MalI | GATC | 1 cut(s) | 194 |
| MboI | GATC | 1 cut(s) | 192 |
| MboII | GAAGA | 4 cut(s) | 158, 251, 260, 275 |
| MlsI | TGGCCA | 2 cut(s) | 5, 137 |
| MluCI | AATT | 2 cut(s) | 164, 243 |
| MluNI | TGGCCA | 2 cut(s) | 5, 137 |
| MnlI | CCTC | 1 cut(s) | 226 |
| Mox20I | TGGCCA | 2 cut(s) | 5, 137 |
| MroXI | GAANNNNTTC | 1 cut(s) | 29 |
| MscI | TGGCCA | 2 cut(s) | 5, 137 |
| MseI | TTAA | 2 cut(s) | 18, 72 |
| Msp20I | TGGCCA | 2 cut(s) | 5, 137 |
| MspR9I | CCNGG | 1 cut(s) | 101 |
| MvaI | CCWGG | 1 cut(s) | 101 |
| NdeII | GATC | 1 cut(s) | 192 |
| NlaIV | GGNNCC | 1 cut(s) | 228 |
| PdmI | GAANNNNTTC | 1 cut(s) | 29 |
| PfeI | GAWTC | 1 cut(s) | 113 |
| Psp1406I | AACGTT | 1 cut(s) | 207 |
| Psp6I | CCWGG | 1 cut(s) | 99 |
| PspGI | CCWGG | 1 cut(s) | 99 |
| PspN4I | GGNNCC | 1 cut(s) | 228 |
| RsaI | GTAC | 1 cut(s) | 89 |
| RsaNI | GTAC | 1 cut(s) | 88 |
| SaqAI | TTAA | 2 cut(s) | 18, 72 |
| Sau3AI | GATC | 1 cut(s) | 192 |
| ScrFI | CCNGG | 1 cut(s) | 101 |
| SetI | ASST | 4 cut(s) | 31, 97, 210, 219 |
| SfaNI | GCATC | 1 cut(s) | 241 |
| Sse9I | AATT | 2 cut(s) | 164, 243 |
| StyD4I | CCNGG | 1 cut(s) | 99 |
| TaaI | ACNGT | 1 cut(s) | 58 |
| TaiI | ACGT | 1 cut(s) | 210 |
| TasI | AATT | 2 cut(s) | 164, 243 |
| TatI | WGTACW | 1 cut(s) | 87 |
| TfiI | GAWTC | 1 cut(s) | 113 |
| Tru1I | TTAA | 2 cut(s) | 18, 72 |
| Tru9I | TTAA | 2 cut(s) | 18, 72 |
| TspDTI | ATGAA | 2 cut(s) | 137, 252 |
| XmnI | GAANNNNTTC | 1 cut(s) | 29 |