RchiOBHm_Chr7g0231121

Small nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0010774
Physical Location & Seq
Reverse (-)
54723121 .. 54727477
4357 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20710

Sequence Viewer

Length: 267 bp
ATGGCTACAATACCAGTTAACCCGAAGCCTTTCTTGAACAATCTCACTGGGAAGACCGTGTTCGTGAAGCTTAAATGGGGAATGGAATACAAAGGTTTCCTTGTCTCTGTGGATTCCTATATGAATTTGCAGTTGGCGAACACTGAAGAATATATTGATGGACAATTTACTGGAAATCTTGGGGAGATTTTGATCAGGTGCAACAATGTTCTCTATCTTCGTGGGGTGCCTGAGGATGAAGAAATTGAAGATGCTGAACAGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
LSM

Protein Analysis

88

Amino Acids

10.0

Weight (kDa)

4.39

Isoelectric Point (pI)

47.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 10 - 73 1.9e-23 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 226
AcsI RAATTY 1 cut(s) 124
AcuI CTGAAG 1 cut(s) 165
AgsI TTSAA 2 cut(s) 37, 248
AjuI GAANNNNNNNTTGG 2 cut(s) 116, 148
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
Alw26I GTCTC 1 cut(s) 109
ApoI RAATTY 1 cut(s) 124
Asp700I GAANNNNTTC 1 cut(s) 29
AxyI CCTNAGG 1 cut(s) 231
BanI GGYRCC 1 cut(s) 226
BbsI GAAGAC 1 cut(s) 59
BccI CCATC 1 cut(s) 152
BclI TGATCA 1 cut(s) 192
BcoDI GTCTC 1 cut(s) 109
BmiI GGNNCC 1 cut(s) 228
BmrI ACTGGG 1 cut(s) 57
BmsI GCATC 1 cut(s) 241
BmuI ACTGGG 1 cut(s) 57
BpiI GAAGAC 1 cut(s) 59
BsaBI GATNNNNATC 1 cut(s) 191
Bse1I ACTGG 3 cut(s) 14, 52, 175
Bse21I CCTNAGG 1 cut(s) 231
Bse8I GATNNNNATC 1 cut(s) 191
BseGI GGATG 1 cut(s) 241
BseJI GATNNNNATC 1 cut(s) 191
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 3 cut(s) 14, 52, 175
BshNI GGYRCC 1 cut(s) 226
BsmAI GTCTC 1 cut(s) 109
Bsp143I GATC 1 cut(s) 192
BspCNI CTCAG 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 228
BspT107I GGYRCC 1 cut(s) 226
BsrI ACTGG 3 cut(s) 14, 52, 175
BssMI GATC 1 cut(s) 192
Bst4CI ACNGT 1 cut(s) 58
BstDEI CTNAG 1 cut(s) 231
BstF5I GGATG 1 cut(s) 241
BstKTI GATC 1 cut(s) 195
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 1 cut(s) 192
BstV2I GAAGAC 1 cut(s) 59
Bsu36I CCTNAGG 1 cut(s) 231
BtsCI GGATG 1 cut(s) 241
BtsIMutI CAGTG 2 cut(s) 45, 141
CviJI RGCY 3 cut(s) 5, 28, 70
CviKI_1 RGCY 3 cut(s) 5, 28, 70
DdeI CTNAG 1 cut(s) 231
DpnI GATC 1 cut(s) 194
DpnII GATC 1 cut(s) 192
Eco57I CTGAAG 1 cut(s) 165
Eco81I CCTNAGG 1 cut(s) 231
FaiI YATR 3 cut(s) 120, 122, 153
FalI AAGNNNNNCTT 4 cut(s) 17, 49, 84, 116
FbaI TGATCA 1 cut(s) 192
FokI GGATG 1 cut(s) 248
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 1 cut(s) 113
HpaI GTTAAC 1 cut(s) 19
Hpy166II GTNNAC 1 cut(s) 19
Hpy188III TCNNGA 2 cut(s) 34, 64
Hpy8I GTNNAC 1 cut(s) 19
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4V TGCA 2 cut(s) 130, 201
HpyF3I CTNAG 1 cut(s) 231
Ksp22I TGATCA 1 cut(s) 192
KspAI GTTAAC 1 cut(s) 19
Kzo9I GATC 1 cut(s) 192
LpnPI CCDG 6 cut(s) 27, 33, 156, 181, 243, 245
LweI GCATC 1 cut(s) 241
MalI GATC 1 cut(s) 194
MboI GATC 1 cut(s) 192
MboII GAAGA 5 cut(s) 64, 158, 209, 251, 260
MluCI AATT 3 cut(s) 124, 164, 243
MnlI CCTC 1 cut(s) 226
MroXI GAANNNNTTC 1 cut(s) 29
MseI TTAA 2 cut(s) 18, 72
NdeII GATC 1 cut(s) 192
NlaIV GGNNCC 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 29
PfeI GAWTC 1 cut(s) 113
PspN4I GGNNCC 1 cut(s) 228
SaqAI TTAA 2 cut(s) 18, 72
Sau3AI GATC 1 cut(s) 192
SetI ASST 3 cut(s) 72, 97, 200
SfaNI GCATC 1 cut(s) 241
Sse9I AATT 3 cut(s) 124, 164, 243
TaaI ACNGT 1 cut(s) 58
TasI AATT 3 cut(s) 124, 164, 243
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 2 cut(s) 18, 72
Tru9I TTAA 2 cut(s) 18, 72
TscAI CASTG 2 cut(s) 52, 148
TspDTI ATGAA 2 cut(s) 137, 252
TspRI CASTG 2 cut(s) 52, 148
XapI RAATTY 1 cut(s) 124
XmnI GAANNNNTTC 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.