Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0010774

Physical Location & Seq

Genomic Coordinates Forward (+)

19980459 .. 19983840

Gene Structure 3382 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g22460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGCTTTTTTGTAATATTATTATTATTATTTGCTTTTTATTTAAAATTAAATTATCGAAGTTAAATAAAGAGTTTAATTTAAAAAAAAAAAAAAAAACAAACAAACAAACAAACAAAATACACATAGACATACTCACAAGGCATAGTAATCGTAATTGCACTTACTTTTATTTTTGCCTATGCCAAACGGATGAACTTATACAAAAACATCACTTTTCAAAAAAATCAAATATCATATTATTAAAACTGACCCAATATGGCTCCTACCCCAAATACAAAAAAAGTGAAGAAAAAACCCTAAACCTTCTCGTCAAGCTCGACTCTACCGCTGAAGCCCCTCTTCTCTCTCTGTCTCCAATGGCTACAATACCAGTTAACCCGAAGCCGTTCTTGAATAATCTGACTGGAAAGACTGTCATTGTGAAACTTAAATGGGGAATGGAGTACAAAGGTTTTCTTGTCTCGACTGATGCCTATATGAACTTGCAGTTGGCAAACACTGAAGAATATATTGATGGGCAATCCACTGGAAATCTTGGAGAGATTTTGATAAGATGCAATAATGTTCTTTATCTTCGTGGGGTGCCAGAGGATGAAGAAATTGAAGATGCTGAACAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005685 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030532 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

LSM

Protein Analysis

208

Amino Acids

23.93

Weight (kDa)

8.99

Isoelectric Point (pI)

45.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSM	PF01423	129 - 192	7.9e-23	LSM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30220 AT4G30220
fragaria_vesca	FvH4_5g33040 FvH4_7g09330
malus_domestica	MD08G1247300.v1.1 MD13G1253400.v1.1 MD16G1257700.v1.1
prunus_persica	Prupe.1G085500_v2.0.a1 Prupe.1G584000_v2.0.a1 Prupe.1G584000_v2.0.a1
pyrus_communis	pycom08g21420 pycom13g22460
rosa_chinensis	RchiOBHm_Chr7g0231121
rosa_roxburghii	Rroxscaffold_3G00229470
rosa_rugosa	Rorug07G0264800
rosa_samantha	Rh7AG417600 Rh7BG393800 Rh7CG437600 Rh7DG411600
rosa_wichuraiana	Rw7G034580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	583
AciI	CCGC	1 cut(s)	327
AcuI	CTGAAG	2 cut(s)	351, 522
AfaI	GTAC	1 cut(s)	446
AgsI	TTSAA	3 cut(s)	219, 394, 605
AjuI	GAANNNNNNNTTGG	2 cut(s)	473, 505
AluBI	AGCT	1 cut(s)	316
AluI	AGCT	1 cut(s)	316
Alw26I	GTCTC	2 cut(s)	357, 466
Asp700I	GAANNNNTTC	1 cut(s)	386
BanI	GGYRCC	1 cut(s)	583
BccI	CCATC	1 cut(s)	509
BceAI	ACGGC	1 cut(s)	370
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BcoDI	GTCTC	2 cut(s)	357, 466
BmiI	GGNNCC	2 cut(s)	262, 585
BmsI	GCATC	3 cut(s)	460, 545, 598
Bse1I	ACTGG	3 cut(s)	371, 409, 532
BseGI	GGATG	2 cut(s)	196, 598
BseNI	ACTGG	3 cut(s)	371, 409, 532
BshNI	GGYRCC	1 cut(s)	583
BsmAI	GTCTC	2 cut(s)	357, 466
BspACI	CCGC	1 cut(s)	327
BspLI	GGNNCC	2 cut(s)	262, 585
BspT107I	GGYRCC	1 cut(s)	583
BsrI	ACTGG	3 cut(s)	371, 409, 532
Bst4CI	ACNGT	1 cut(s)	415
Bst6I	CTCTTC	1 cut(s)	345
BstF5I	GGATG	2 cut(s)	196, 598
BstMAI	GTCTC	2 cut(s)	357, 466
BtsCI	GGATG	2 cut(s)	196, 598
BtsIMutI	CAGTG	2 cut(s)	498, 525
Csp6I	GTAC	1 cut(s)	445
CviJI	RGCY	5 cut(s)	261, 316, 335, 362, 385
CviKI_1	RGCY	5 cut(s)	261, 316, 335, 362, 385
CviQI	GTAC	1 cut(s)	445
DraI	TTTAAA	2 cut(s)	43, 81
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Eco57I	CTGAAG	2 cut(s)	351, 522
FalI	AAGNNNNNCTT	6 cut(s)	324, 356, 374, 406, 441, 473
FokI	GGATG	2 cut(s)	203, 605
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HinfI	GANTC	1 cut(s)	320
HpaI	GTTAAC	1 cut(s)	376
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	1 cut(s)	402
Hpy188III	TCNNGA	2 cut(s)	391, 463
Hpy8I	GTNNAC	1 cut(s)	376
HpyAV	CCTTC	1 cut(s)	314
HpyCH4III	ACNGT	1 cut(s)	415
HpyCH4V	TGCA	3 cut(s)	159, 487, 558
KspAI	GTTAAC	1 cut(s)	376
LmnI	GCTCC	1 cut(s)	266
LpnPI	CCDG	5 cut(s)	384, 390, 513, 600, 602
LweI	GCATC	3 cut(s)	460, 545, 598
MboII	GAAGA	6 cut(s)	299, 332, 515, 566, 608, 617
MluCI	AATT	5 cut(s)	45, 50, 76, 154, 600
MlyI	GAGTC	1 cut(s)	314
MnlI	CCTC	2 cut(s)	348, 583
MroXI	GAANNNNTTC	1 cut(s)	386
MseI	TTAA	8 cut(s)	42, 48, 62, 75, 80, 242, 375, 429
MspA1I	CMGCKG	1 cut(s)	329
NlaIV	GGNNCC	2 cut(s)	262, 585
PcsI	WCGNNNNNNNCGW	1 cut(s)	315
PdmI	GAANNNNTTC	1 cut(s)	386
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
PspN4I	GGNNCC	2 cut(s)	262, 585
RsaI	GTAC	1 cut(s)	446
RsaNI	GTAC	1 cut(s)	445
SaqAI	TTAA	8 cut(s)	42, 48, 62, 75, 80, 242, 375, 429
SchI	GAGTC	1 cut(s)	314
SetI	ASST	3 cut(s)	306, 318, 454
SfaNI	GCATC	3 cut(s)	460, 545, 598
Sse9I	AATT	5 cut(s)	45, 50, 76, 154, 600
SsiI	CCGC	1 cut(s)	327
SspI	AATATT	1 cut(s)	16
TaaI	ACNGT	1 cut(s)	415
TaqI	TCGA	3 cut(s)	56, 318, 464
TasI	AATT	5 cut(s)	45, 50, 76, 154, 600
TatI	WGTACW	1 cut(s)	444
Tru1I	TTAA	8 cut(s)	42, 48, 62, 75, 80, 242, 375, 429
Tru9I	TTAA	8 cut(s)	42, 48, 62, 75, 80, 242, 375, 429
TscAI	CASTG	2 cut(s)	505, 532
TspDTI	ATGAA	3 cut(s)	207, 494, 609
TspGWI	ACGGA	1 cut(s)	203
TspRI	CASTG	2 cut(s)	505, 532
XmnI	GAANNNNTTC	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.