Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0010774

Physical Location & Seq

Genomic Coordinates Reverse (-)

30258703 .. 30262026

Gene Structure 3324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1257700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGCTACAATACCAGTTAACCCGAAGCCGTTCCTGAATAATCTGACTGGTAAGACTGTCATTGTGAAACTTAAATGGGGAATGGAGTACAAAGGTTTTCTTGTCTCGACAGATGCCTATATGAACTTGCAGTTGGCAAACACTGAAGAATATATTGATGGACAATCTACTGGAAACCTTGGAGAGATTTTGATCAGATGCAATAATGTTCTGTATCTTCGTGGGGTACCAGAGGATGAAGAAATTGAAGATGCTGAACGGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005685 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030532 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

LSM

Protein Analysis

89

Amino Acids

9.94

Weight (kDa)

4.55

Isoelectric Point (pI)

47.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSM	PF01423	10 - 73	9e-24	LSM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30220 AT4G30220
fragaria_vesca	FvH4_5g33040 FvH4_7g09330
malus_domestica	MD08G1247300.v1.1 MD13G1253400.v1.1 MD16G1257700.v1.1
prunus_persica	Prupe.1G085500_v2.0.a1 Prupe.1G584000_v2.0.a1 Prupe.1G584000_v2.0.a1
pyrus_communis	pycom08g21420 pycom13g22460
rosa_chinensis	RchiOBHm_Chr7g0231121
rosa_roxburghii	Rroxscaffold_3G00229470
rosa_rugosa	Rorug07G0264800
rosa_samantha	Rh7AG417600 Rh7BG393800 Rh7CG437600 Rh7DG411600
rosa_wichuraiana	Rw7G034580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	226
AccB1I	GGYRCC	1 cut(s)	226
AcuI	CTGAAG	1 cut(s)	165
AfaI	GTAC	2 cut(s)	89, 228
AgsI	TTSAA	1 cut(s)	248
AjuI	GAANNNNNNNTTGG	2 cut(s)	116, 148
Alw26I	GTCTC	1 cut(s)	109
Asp700I	GAANNNNTTC	1 cut(s)	29
Asp718I	GGTACC	1 cut(s)	226
BanI	GGYRCC	1 cut(s)	226
BccI	CCATC	1 cut(s)	152
BceAI	ACGGC	1 cut(s)	13
BclI	TGATCA	1 cut(s)	192
BcoDI	GTCTC	1 cut(s)	109
BmiI	GGNNCC	1 cut(s)	228
BmsI	GCATC	3 cut(s)	103, 188, 241
BsaBI	GATNNNNATC	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	178
Bse1I	ACTGG	3 cut(s)	14, 52, 175
Bse8I	GATNNNNATC	1 cut(s)	191
BseDI	CCNNGG	1 cut(s)	178
BseGI	GGATG	1 cut(s)	241
BseJI	GATNNNNATC	1 cut(s)	191
BseNI	ACTGG	3 cut(s)	14, 52, 175
BshNI	GGYRCC	1 cut(s)	226
BsmAI	GTCTC	1 cut(s)	109
Bsp143I	GATC	1 cut(s)	192
BspLI	GGNNCC	1 cut(s)	228
BspT107I	GGYRCC	1 cut(s)	226
BsrI	ACTGG	3 cut(s)	14, 52, 175
BssECI	CCNNGG	1 cut(s)	178
BssMI	GATC	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	178
Bst4CI	ACNGT	1 cut(s)	58
BstF5I	GGATG	1 cut(s)	241
BstKTI	GATC	1 cut(s)	195
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	141
Csp6I	GTAC	2 cut(s)	88, 227
CviJI	RGCY	2 cut(s)	5, 28
CviKI_1	RGCY	2 cut(s)	5, 28
CviQI	GTAC	2 cut(s)	88, 227
DpnI	GATC	1 cut(s)	194
DpnII	GATC	1 cut(s)	192
Eco130I	CCWWGG	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	178
FaiI	YATR	3 cut(s)	120, 122, 153
FalI	AAGNNNNNCTT	2 cut(s)	84, 116
FbaI	TGATCA	1 cut(s)	192
FokI	GGATG	1 cut(s)	248
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HpaI	GTTAAC	1 cut(s)	19
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	2 cut(s)	45, 197
Hpy188III	TCNNGA	2 cut(s)	34, 106
Hpy8I	GTNNAC	1 cut(s)	19
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	2 cut(s)	130, 201
KpnI	GGTACC	1 cut(s)	230
Ksp22I	TGATCA	1 cut(s)	192
KspAI	GTTAAC	1 cut(s)	19
Kzo9I	GATC	1 cut(s)	192
LpnPI	CCDG	5 cut(s)	27, 33, 47, 156, 243
LweI	GCATC	3 cut(s)	103, 188, 241
MalI	GATC	1 cut(s)	194
MboI	GATC	1 cut(s)	192
MboII	GAAGA	4 cut(s)	158, 209, 251, 260
MluCI	AATT	1 cut(s)	243
MnlI	CCTC	1 cut(s)	226
MroXI	GAANNNNTTC	1 cut(s)	29
MseI	TTAA	2 cut(s)	18, 72
NdeII	GATC	1 cut(s)	192
NlaIV	GGNNCC	1 cut(s)	228
PdmI	GAANNNNTTC	1 cut(s)	29
PspN4I	GGNNCC	1 cut(s)	228
RsaI	GTAC	2 cut(s)	89, 228
RsaNI	GTAC	2 cut(s)	88, 227
SaqAI	TTAA	2 cut(s)	18, 72
Sau3AI	GATC	1 cut(s)	192
SetI	ASST	2 cut(s)	97, 180
SfaNI	GCATC	3 cut(s)	103, 188, 241
Sse9I	AATT	1 cut(s)	243
StyI	CCWWGG	1 cut(s)	178
TaaI	ACNGT	1 cut(s)	58
TaqI	TCGA	1 cut(s)	107
TasI	AATT	1 cut(s)	243
TatI	WGTACW	1 cut(s)	87
Tru1I	TTAA	2 cut(s)	18, 72
Tru9I	TTAA	2 cut(s)	18, 72
TscAI	CASTG	1 cut(s)	148
TspDTI	ATGAA	2 cut(s)	137, 252
TspRI	CASTG	1 cut(s)	148
XmnI	GAANNNNTTC	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.