AT4G30630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014978
Physical Location & Seq
Forward (+)
14950320 .. 14952446
2127 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G30630.2

Sequence Viewer

Length: 714 bp
ATGAAGAAGACTAATTTCGTTTCCTCTGCTTCCGGTGGCGATCCCATGATCAGATTAACCTTTGTGCAGGTTCTGGAGTTGGAAAAGGAATTAGAGATAAAGAGAAAGAGATTGGAGATGATTAAACAAAAGAGATTGACCCTCAAGTCAGAAGTTAGGTTCTTGAGACGTAGATACGAGCACTTGAAGCAAGATCAAACTCTTGAAACCTCTCCAGAGATGTTGAGATTGTCAGAATCCGGGGGTTTAGAGGTCCCAAGGAAACCAAGTGGCGAAAGAAAGAAGCAGTCTGGTGTGAGAGCATCTGTACCATGTTTTGATTTGAAACTGAAGAATACAATTTGCAATGAGAAGGAAGCATTGGCTAATAATGTTGCAAGTTGTGACTTGGATAAGAAGCGAAAAAGGAGCAGAGGAAGCGATGTTTTGACATTCCCCGTTTCACTTCCTGACCTTAACGGAGAGGGAAACACTTCTGGCACTGACAAAGTCCCTGGCTTTGACCTAAACCAGATCTCGAGAGAAGAAGAGGAGCCGGAAGTGAATGGTGAACATATGGTCGCGGAAGCAATGAAGAATGCAATGCTTGATAACAGGATCAGTGATCTACATGTTGAAAGAAAGTTACCCATTTGCGGAGATGTGGAGAAAGAGTTAAATAGAGCAGTGAAGAGGAAGGTTACATGGCAAGATCCAGTGGCTTTAAGTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

26.9

Weight (kDa)

9.1

Isoelectric Point (pI)

45.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014978)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30630 AT4G30630
fragaria_vesca FvH4_2g41181
malus_domestica MD08G1055700.v1.1 MD15G1041800.v1.1
prunus_persica Prupe.1G394700_v2.0.a1
pyrus_communis pycom08g04570
rosa_chinensis RchiOBHm_Chr6g0299341
rosa_laevigata RLG00000011441
rosa_multiflora Rmu_ssc0000374.1_g000004
rosa_rugosa Rorug06G0287300
rosa_samantha Rh6AG398900 Rh6BG407300 Rh6CG413200 Rh6DG400100
rosa_wichuraiana Rw6G034920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 145
Acc36I ACCTGC 1 cut(s) 58
AccII CGCG 1 cut(s) 563
AciI CCGC 2 cut(s) 563, 636
AclWI GGATC 3 cut(s) 35, 605, 686
AcuI CTGAAG 1 cut(s) 350
AfaI GTAC 1 cut(s) 309
AfiI CCNNNNNNNGG 1 cut(s) 635
AflIII ACRYGT 1 cut(s) 610
AgsI TTSAA 4 cut(s) 187, 206, 325, 617
AjnI CCWGG 1 cut(s) 493
AjuI GAANNNNNNNTTGG 2 cut(s) 344, 376
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 1 cut(s) 160
AlwI GGATC 3 cut(s) 35, 605, 686
AlwNI CAGNNNCTG 1 cut(s) 73
Ama87I CYCGRG 1 cut(s) 517
Asp700I GAANNNNTTC 1 cut(s) 472
AspS9I GGNCC 1 cut(s) 253
AsuC2I CCSGG 1 cut(s) 241
AsuHPI GGTGA 1 cut(s) 560
AvaI CYCGRG 1 cut(s) 517
AvaII GGWCC 1 cut(s) 253
BbsI GAAGAC 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 183
BciT130I CCWGG 1 cut(s) 495
BclI TGATCA 1 cut(s) 48
BcnI CCSGG 1 cut(s) 241
BcoDI GTCTC 1 cut(s) 160
BfuAI ACCTGC 1 cut(s) 58
BglII AGATCT 1 cut(s) 513
Bme1390I CCNGG 2 cut(s) 241, 495
Bme18I GGWCC 1 cut(s) 253
BmeT110I CYCGRG 1 cut(s) 517
BmgT120I GGNCC 1 cut(s) 253
BmiI GGNNCC 2 cut(s) 255, 534
BmrFI CCNGG 2 cut(s) 241, 495
BmsI GCATC 1 cut(s) 311
BpiI GAAGAC 1 cut(s) 14
BpmI CTGGAG 2 cut(s) 95, 198
BpuEI CTTGAG 2 cut(s) 128, 184
BpuMI CCSGG 1 cut(s) 241
BsaJI CCNNGG 3 cut(s) 240, 257, 493
BsaWI WCCGGW 1 cut(s) 32
BsaXI ACNNNNNCTCC 2 cut(s) 638, 668
Bsc4I CCNNNNNNNGG 1 cut(s) 635
Bse1I ACTGG 1 cut(s) 695
Bse3DI GCAATG 3 cut(s) 352, 576, 588
BseBI CCWGG 1 cut(s) 495
BseDI CCNNGG 3 cut(s) 240, 257, 493
BseLI CCNNNNNNNGG 1 cut(s) 635
BseMI GCAATG 3 cut(s) 352, 576, 588
BseNI ACTGG 1 cut(s) 695
BseRI GAGGAG 1 cut(s) 545
BsgI GTGCAG 1 cut(s) 86
Bsh1236I CGCG 1 cut(s) 563
BsiHKAI GWGCWC 1 cut(s) 183
BsiHKCI CYCGRG 1 cut(s) 517
BsiSI CCGG 3 cut(s) 33, 240, 536
BslFI GGGAC 2 cut(s) 239, 476
BslI CCNNNNNNNGG 1 cut(s) 635
BsmAI GTCTC 1 cut(s) 160
BsmBI CGTCTC 1 cut(s) 160
BsmFI GGGAC 2 cut(s) 239, 476
BsmI GAATGC 1 cut(s) 583
BsoBI CYCGRG 1 cut(s) 517
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 7 cut(s) 40, 48, 193, 513, 597, 604, 691
BspACI CCGC 2 cut(s) 563, 636
BspFNI CGCG 1 cut(s) 563
BspLI GGNNCC 2 cut(s) 255, 534
BspMI ACCTGC 1 cut(s) 58
BspPI GGATC 3 cut(s) 35, 605, 686
BsrDI GCAATG 3 cut(s) 352, 576, 588
BsrI ACTGG 1 cut(s) 695
BssECI CCNNGG 3 cut(s) 240, 257, 493
BssMI GATC 7 cut(s) 40, 48, 193, 513, 597, 604, 691
BssT1I CCWWGG 1 cut(s) 257
Bst2UI CCWGG 1 cut(s) 495
Bst6I CTCTTC 2 cut(s) 522, 665
BstFNI CGCG 1 cut(s) 563
BstKTI GATC 7 cut(s) 43, 51, 196, 516, 600, 607, 694
BstMAI GTCTC 1 cut(s) 160
BstMBI GATC 7 cut(s) 40, 48, 193, 513, 597, 604, 691
BstMWI GCNNNNNNNGC 2 cut(s) 187, 417
BstNI CCWGG 1 cut(s) 495
BstNSI RCATGY 1 cut(s) 614
BstSCI CCNGG 2 cut(s) 239, 493
BstUI CGCG 1 cut(s) 563
BstV2I GAAGAC 1 cut(s) 14
BstX2I RGATCY 2 cut(s) 513, 691
BstYI RGATCY 2 cut(s) 513, 691
BtgZI GCGATG 1 cut(s) 435
BtsI GCAGTG 1 cut(s) 672
BtsIMutI CAGTG 4 cut(s) 480, 607, 672, 702
BveI ACCTGC 1 cut(s) 58
CaiI CAGNNNCTG 1 cut(s) 73
Cfr13I GGNCC 1 cut(s) 253
Csp6I GTAC 1 cut(s) 308
CviAII CATG 4 cut(s) 46, 312, 611, 684
CviJI RGCY 4 cut(s) 365, 498, 535, 701
CviKI_1 RGCY 4 cut(s) 365, 498, 535, 701
CviQI GTAC 1 cut(s) 308
DpnI GATC 7 cut(s) 42, 50, 195, 515, 599, 606, 693
DpnII GATC 7 cut(s) 40, 48, 193, 513, 597, 604, 691
DrdI GACNNNNNNGTC 1 cut(s) 145
DseDI GACNNNNNNGTC 1 cut(s) 145
Eam1104I CTCTTC 2 cut(s) 522, 665
EarI CTCTTC 2 cut(s) 522, 665
Eco130I CCWWGG 1 cut(s) 257
Eco47I GGWCC 1 cut(s) 253
Eco57I CTGAAG 1 cut(s) 350
Eco88I CYCGRG 1 cut(s) 517
EcoO109I RGGNCCY 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 493
EcoT14I CCWWGG 1 cut(s) 257
ErhI CCWWGG 1 cut(s) 257
Esp3I CGTCTC 1 cut(s) 160
FaeI CATG 4 cut(s) 49, 315, 614, 687
FaiI YATR 6 cut(s) 47, 313, 555, 557, 612, 685
FaqI GGGAC 2 cut(s) 239, 476
FatI CATG 4 cut(s) 45, 311, 610, 683
FauNDI CATATG 1 cut(s) 555
FbaI TGATCA 1 cut(s) 48
GsuI CTGGAG 2 cut(s) 95, 198
HapII CCGG 3 cut(s) 33, 240, 536
Hin1II CATG 4 cut(s) 49, 315, 614, 687
HinfI GANTC 1 cut(s) 236
HpaII CCGG 3 cut(s) 33, 240, 536
HphI GGTGA 1 cut(s) 560
Hpy166II GTNNAC 1 cut(s) 551
Hpy188I TCNGA 3 cut(s) 53, 151, 235
Hpy188III TCNNGA 7 cut(s) 74, 163, 203, 215, 449, 517, 519
Hpy8I GTNNAC 1 cut(s) 551
HpyAV CCTTC 2 cut(s) 346, 670
HpyCH4IV ACGT 1 cut(s) 169
HpyCH4V TGCA 4 cut(s) 67, 345, 377, 581
HpyF10VI GCNNNNNNNGC 2 cut(s) 187, 417
HpySE526I ACGT 1 cut(s) 169
Hsp92II CATG 4 cut(s) 49, 315, 614, 687
Ksp22I TGATCA 1 cut(s) 48
Kzo9I GATC 7 cut(s) 40, 48, 193, 513, 597, 604, 691
LmnI GCTCC 2 cut(s) 408, 532
LweI GCATC 1 cut(s) 311
MaeII ACGT 1 cut(s) 169
MaeIII GTNAC 3 cut(s) 383, 624, 679
MalI GATC 7 cut(s) 42, 50, 195, 515, 599, 606, 693
MboI GATC 7 cut(s) 40, 48, 193, 513, 597, 604, 691
MboII GAAGA 7 cut(s) 16, 19, 343, 536, 539, 586, 682
MflI RGATCY 2 cut(s) 513, 691
MhlI GDGCHC 1 cut(s) 183
MluCI AATT 3 cut(s) 13, 89, 339
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 8 cut(s) 34, 152, 220, 244, 407, 457, 523, 666
MroXI GAANNNNTTC 1 cut(s) 472
MseI TTAA 5 cut(s) 56, 123, 456, 656, 704
MspI CCGG 3 cut(s) 33, 240, 536
MspR9I CCNGG 2 cut(s) 241, 495
Mva1269I GAATGC 1 cut(s) 583
MvaI CCWGG 1 cut(s) 495
MvnI CGCG 1 cut(s) 563
MwoI GCNNNNNNNGC 2 cut(s) 187, 417
NciI CCSGG 1 cut(s) 241
NdeI CATATG 1 cut(s) 555
NdeII GATC 7 cut(s) 40, 48, 193, 513, 597, 604, 691
NlaIII CATG 4 cut(s) 49, 315, 614, 687
NlaIV GGNNCC 2 cut(s) 255, 534
NmuCI GTSAC 1 cut(s) 383
NspI RCATGY 1 cut(s) 614
PaeR7I CTCGAG 1 cut(s) 517
PciI ACATGT 1 cut(s) 610
PctI GAATGC 1 cut(s) 583
PdmI GAANNNNTTC 1 cut(s) 472
PfeI GAWTC 1 cut(s) 236
PflFI GACNNNGTC 1 cut(s) 488
PpuMI RGGWCCY 1 cut(s) 253
PscI ACATGT 1 cut(s) 610
Psp5II RGGWCCY 1 cut(s) 253
Psp6I CCWGG 1 cut(s) 493
PspGI CCWGG 1 cut(s) 493
PspN4I GGNNCC 2 cut(s) 255, 534
PspPI GGNCC 1 cut(s) 253
PspPPI RGGWCCY 1 cut(s) 253
PstNI CAGNNNCTG 1 cut(s) 73
PsuI RGATCY 2 cut(s) 513, 691
PsyI GACNNNGTC 1 cut(s) 488
RsaI GTAC 1 cut(s) 309
RsaNI GTAC 1 cut(s) 308
SaqAI TTAA 5 cut(s) 56, 123, 456, 656, 704
Sau3AI GATC 7 cut(s) 40, 48, 193, 513, 597, 604, 691
Sau96I GGNCC 1 cut(s) 253
ScrFI CCNGG 2 cut(s) 241, 495
SduI GDGCHC 1 cut(s) 183
SetI ASST 9 cut(s) 62, 72, 161, 172, 212, 255, 456, 507, 681
SfaNI GCATC 1 cut(s) 311
Sfr274I CTCGAG 1 cut(s) 517
SinI GGWCC 1 cut(s) 253
SlaI CTCGAG 1 cut(s) 517
SmlI CTYRAG 3 cut(s) 143, 163, 517
SmoI CTYRAG 3 cut(s) 143, 163, 517
Sse9I AATT 3 cut(s) 13, 89, 339
SsiI CCGC 2 cut(s) 563, 636
StyD4I CCNGG 2 cut(s) 239, 493
StyI CCWWGG 1 cut(s) 257
TaiI ACGT 1 cut(s) 172
TaqI TCGA 1 cut(s) 518
TasI AATT 3 cut(s) 13, 89, 339
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 5 cut(s) 56, 123, 456, 656, 704
Tru9I TTAA 5 cut(s) 56, 123, 456, 656, 704
TscAI CASTG 4 cut(s) 487, 607, 672, 702
TseFI GTSAC 1 cut(s) 383
Tsp45I GTSAC 1 cut(s) 383
TspDTI ATGAA 2 cut(s) 17, 587
TspGWI ACGGA 1 cut(s) 474
TspRI CASTG 4 cut(s) 487, 607, 672, 702
Tth111I GACNNNGTC 1 cut(s) 488
VpaK11BI GGWCC 1 cut(s) 253
XceI RCATGY 1 cut(s) 614
XhoI CTCGAG 1 cut(s) 517
XmnI GAANNNNTTC 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.