RchiOBHm_Chr6g0299341

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
60464216 .. 60466094
1879 bp
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UTR
Exon/CDS
Intron
PRQ26878

Sequence Viewer

Length: 486 bp
ATGAAAAGGGTGGCTGTTAATTCTAAGAACACCTCTGAGGCTCACCATGTTGTTGACGACCAAGCTAAGCTTCAATTGAGACATCAAACTCTTCTGCAAGATCACCTTGACCTCCAAAAGGAGGTTGTAACTAAGAAGAAGAAATTGCAAGCTGCAAAGCAGAAGAGAGACATCCTTTTGGCTGAAATTGGATTTCTGAGAAGAAGGCTGAGGCATTTGCAGAAGCTAAAATCTGCAGAAACGGAACCAAAAGTTGTCCAGCATGAAACTTCCAACACAAAATCAAAAAAGTTTTCAAGGAAGAGGAACAATGATGCCAGTGAAGCTGTTCCAAGTAAACACTCCCATGTGGTGCACGAAGAAGGAGAAGAACTTGTTTGGGAGCCCAAAAGAGTAGAGAAGAAGTCTAAAACTTGGTTAATCAATGACAAACGAGTTGGAAAGAGAAAAATTGAAGTGCAAGATGAGGTTGCTTTGAATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

18.77

Weight (kDa)

10.03

Isoelectric Point (pI)

60.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014978)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30630 AT4G30630
fragaria_vesca FvH4_2g41181
malus_domestica MD08G1055700.v1.1 MD15G1041800.v1.1
prunus_persica Prupe.1G394700_v2.0.a1
pyrus_communis pycom08g04570
rosa_chinensis RchiOBHm_Chr6g0299341
rosa_laevigata RLG00000011441
rosa_multiflora Rmu_ssc0000374.1_g000004
rosa_rugosa Rorug06G0287300
rosa_samantha Rh6AG398900 Rh6BG407300 Rh6CG413200 Rh6DG400100
rosa_wichuraiana Rw6G034920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 2 cut(s) 118, 121
AgsI TTSAA 4 cut(s) 74, 297, 455, 478
AjuI GAANNNNNNNTTGG 2 cut(s) 54, 86
AluBI AGCT 5 cut(s) 65, 70, 152, 226, 326
AluI AGCT 5 cut(s) 65, 70, 152, 226, 326
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 2 cut(s) 73, 162
Alw44I GTGCAC 1 cut(s) 353
ApaLI GTGCAC 1 cut(s) 353
ApeKI GCWGC 1 cut(s) 152
Asp700I GAANNNNTTC 1 cut(s) 327
AsuHPI GGTGA 2 cut(s) 35, 95
BaeGI GKGCMC 1 cut(s) 357
BanII GRGCYC 1 cut(s) 387
Bbv12I GWGCWC 1 cut(s) 357
BbvCI CCTCAGC 1 cut(s) 209
BbvI GCAGC 1 cut(s) 139
BcoDI GTCTC 2 cut(s) 73, 162
BfmI CTRYAG 1 cut(s) 234
BisI GCNGC 1 cut(s) 153
BlpI GCTNAGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 154
BmiI GGNNCC 2 cut(s) 246, 384
BmsI GCATC 1 cut(s) 304
Bpu10I CCTNAGC 1 cut(s) 209
Bpu1102I GCTNAGC 1 cut(s) 66
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 121
Bse1I ACTGG 1 cut(s) 318
BseGI GGATG 1 cut(s) 171
BseLI CCNNNNNNNGG 2 cut(s) 118, 121
BseMII CTCAG 3 cut(s) 27, 188, 200
BseNI ACTGG 1 cut(s) 318
BseSI GKGCMC 1 cut(s) 357
BseXI GCAGC 1 cut(s) 139
BsiHKAI GWGCWC 1 cut(s) 357
BslI CCNNNNNNNGG 2 cut(s) 118, 121
BsmAI GTCTC 2 cut(s) 73, 162
Bsp1286I GDGCHC 2 cut(s) 357, 387
Bsp143I GATC 1 cut(s) 100
Bsp1720I GCTNAGC 1 cut(s) 66
BspCNI CTCAG 3 cut(s) 28, 189, 201
BspLI GGNNCC 2 cut(s) 246, 384
BspMAI CTGCAG 1 cut(s) 238
BsrI ACTGG 1 cut(s) 318
BssMI GATC 1 cut(s) 100
Bst6I CTCTTC 3 cut(s) 96, 158, 296
BstC8I GCNNGC 1 cut(s) 150
BstDEI CTNAG 6 cut(s) 24, 36, 66, 132, 197, 209
BstENI CCTNNNNNAGG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 171
BstKTI GATC 1 cut(s) 103
BstMAI GTCTC 2 cut(s) 73, 162
BstMBI GATC 1 cut(s) 100
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstSFI CTRYAG 1 cut(s) 234
BstSLI GKGCMC 1 cut(s) 357
BstV1I GCAGC 1 cut(s) 139
BtsCI GGATG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 325
Cac8I GCNNGC 1 cut(s) 150
CviAII CATG 3 cut(s) 47, 263, 347
DdeI CTNAG 6 cut(s) 24, 36, 66, 132, 197, 209
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
Eam1104I CTCTTC 3 cut(s) 96, 158, 296
EarI CTCTTC 3 cut(s) 96, 158, 296
Eco24I GRGCYC 1 cut(s) 387
EcoNI CCTNNNNNAGG 1 cut(s) 116
EcoT38I GRGCYC 1 cut(s) 387
FaeI CATG 3 cut(s) 50, 266, 350
FaiI YATR 3 cut(s) 48, 264, 348
FalI AAGNNNNNCTT 4 cut(s) 54, 86, 90, 122
FatI CATG 3 cut(s) 46, 262, 346
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 1 cut(s) 158
FriOI GRGCYC 1 cut(s) 387
Fsp4HI GCNGC 1 cut(s) 153
GluI GCNGC 1 cut(s) 153
Hin1II CATG 3 cut(s) 50, 266, 350
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HindIII AAGCTT 1 cut(s) 68
HphI GGTGA 2 cut(s) 35, 95
Hpy166II GTNNAC 3 cut(s) 55, 338, 355
Hpy188I TCNGA 2 cut(s) 37, 198
Hpy8I GTNNAC 3 cut(s) 55, 338, 355
HpyAV CCTTC 2 cut(s) 198, 356
HpyCH4V TGCA 7 cut(s) 97, 148, 155, 220, 236, 355, 460
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpyF3I CTNAG 6 cut(s) 24, 36, 66, 132, 197, 209
Hsp92II CATG 3 cut(s) 50, 266, 350
Kzo9I GATC 1 cut(s) 100
LmnI GCTCC 1 cut(s) 382
LpnPI CCDG 2 cut(s) 272, 331
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 1 cut(s) 304
MaeIII GTNAC 1 cut(s) 127
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 9 cut(s) 83, 148, 151, 175, 213, 313, 371, 380, 412
MfeI CAATTG 1 cut(s) 74
MhlI GDGCHC 2 cut(s) 357, 387
MluCI AATT 5 cut(s) 19, 74, 143, 186, 450
MmeI TCCRAC 2 cut(s) 297, 418
MnlI CCTC 7 cut(s) 31, 43, 115, 122, 204, 297, 460
MroXI GAANNNNTTC 1 cut(s) 327
MseI TTAA 3 cut(s) 18, 419, 484
MslI CAYNNNNRTG 1 cut(s) 345
MunI CAATTG 1 cut(s) 74
MwoI GCNNNNNNNGC 1 cut(s) 323
NdeII GATC 1 cut(s) 100
NlaIII CATG 3 cut(s) 50, 266, 350
NlaIV GGNNCC 2 cut(s) 246, 384
PdmI GAANNNNTTC 1 cut(s) 327
PkrI GCNGC 1 cut(s) 154
PspN4I GGNNCC 2 cut(s) 246, 384
PstI CTGCAG 1 cut(s) 238
RseI CAYNNNNRTG 1 cut(s) 345
SaqAI TTAA 3 cut(s) 18, 419, 484
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 1 cut(s) 100
SduI GDGCHC 2 cut(s) 357, 387
SfaNI GCATC 1 cut(s) 304
SfcI CTRYAG 1 cut(s) 234
SmiMI CAYNNNNRTG 1 cut(s) 345
Sse9I AATT 5 cut(s) 19, 74, 143, 186, 450
TasI AATT 5 cut(s) 19, 74, 143, 186, 450
Tru1I TTAA 3 cut(s) 18, 419, 484
Tru9I TTAA 3 cut(s) 18, 419, 484
TscAI CASTG 1 cut(s) 325
TseI GCWGC 1 cut(s) 152
TspDTI ATGAA 2 cut(s) 17, 279
TspGWI ACGGA 1 cut(s) 257
TspRI CASTG 1 cut(s) 325
VneI GTGCAC 1 cut(s) 353
XagI CCTNNNNNAGG 1 cut(s) 116
XmnI GAANNNNTTC 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.