Rh6BG407300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
63367529 .. 63368574
1046 bp
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UTR
Exon/CDS
Intron
Rh6BG407300.1

Sequence Viewer

Length: 489 bp
ATGAAACGGGTGGCTGTTAATTCTAAGAACACCTCTGAGGCTCACCATGTTGTTGTTGACGACCAAGCTAAGCTTCAATTGAGACATCAAACTCTTCTGCAAGATCACCTTGACCTCCAAAAGGAGGTTGTAACTAAGAAGAAGAAATTGCAAGCTGCAAAGCAGAAGAGAGACATCCTTTTGGCTGAAATTGGATTTCTGAGAAGAAGGCTGAGGCATTTGCAGAAGCTAAAATCTGCAGAAACCGAACCAAAAGTTGTCCAGAATGAAACTTCCAACACAAAATCTATAAAGTTTTCAAGGAAGAGGAACAATGATGCCAGTGAAGCTGTTCCAAGTAAACACTCCCATGTGGTGCACAAAGAAGGAGAAGAACTTGTTTGGGAGCCCATAAGAGTAGAGAAGAAGTCTAAAACTTGGTTAATCAATGACAAACGAGTTGGAAAGAGAAAAATTGAGGTGCAAGATGAGGTTGCTTTGAATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.81

Weight (kDa)

10.06

Isoelectric Point (pI)

56.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014978)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30630 AT4G30630
fragaria_vesca FvH4_2g41181
malus_domestica MD08G1055700.v1.1 MD15G1041800.v1.1
prunus_persica Prupe.1G394700_v2.0.a1
pyrus_communis pycom08g04570
rosa_chinensis RchiOBHm_Chr6g0299341
rosa_laevigata RLG00000011441
rosa_multiflora Rmu_ssc0000374.1_g000004
rosa_rugosa Rorug06G0287300
rosa_samantha Rh6AG398900 Rh6BG407300 Rh6CG413200 Rh6DG400100
rosa_wichuraiana Rw6G034920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 2 cut(s) 121, 124
AgsI TTSAA 3 cut(s) 77, 300, 481
AjuI GAANNNNNNNTTGG 2 cut(s) 57, 89
AluBI AGCT 5 cut(s) 68, 73, 155, 229, 329
AluI AGCT 5 cut(s) 68, 73, 155, 229, 329
Alw21I GWGCWC 1 cut(s) 360
Alw26I GTCTC 2 cut(s) 76, 165
Alw44I GTGCAC 1 cut(s) 356
ApaLI GTGCAC 1 cut(s) 356
ApeKI GCWGC 1 cut(s) 155
Asp700I GAANNNNTTC 1 cut(s) 330
AsuHPI GGTGA 2 cut(s) 35, 98
BaeGI GKGCMC 1 cut(s) 360
BanII GRGCYC 1 cut(s) 390
Bbv12I GWGCWC 1 cut(s) 360
BbvCI CCTCAGC 1 cut(s) 212
BbvI GCAGC 1 cut(s) 142
BcoDI GTCTC 2 cut(s) 76, 165
BfmI CTRYAG 1 cut(s) 237
BisI GCNGC 1 cut(s) 156
BlpI GCTNAGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 387
BmsI GCATC 1 cut(s) 307
Bpu10I CCTNAGC 1 cut(s) 212
Bpu1102I GCTNAGC 1 cut(s) 69
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 124
Bse1I ACTGG 1 cut(s) 321
BseGI GGATG 1 cut(s) 174
BseLI CCNNNNNNNGG 2 cut(s) 121, 124
BseMII CTCAG 3 cut(s) 27, 191, 203
BseNI ACTGG 1 cut(s) 321
BseSI GKGCMC 1 cut(s) 360
BseXI GCAGC 1 cut(s) 142
BsiHKAI GWGCWC 1 cut(s) 360
BslI CCNNNNNNNGG 2 cut(s) 121, 124
BsmAI GTCTC 2 cut(s) 76, 165
Bsp1286I GDGCHC 2 cut(s) 360, 390
Bsp143I GATC 1 cut(s) 103
Bsp1720I GCTNAGC 1 cut(s) 69
BspCNI CTCAG 3 cut(s) 28, 192, 204
BspLI GGNNCC 1 cut(s) 387
BspMAI CTGCAG 1 cut(s) 241
BsrI ACTGG 1 cut(s) 321
BssMI GATC 1 cut(s) 103
Bst6I CTCTTC 3 cut(s) 99, 161, 299
BstC8I GCNNGC 1 cut(s) 153
BstDEI CTNAG 6 cut(s) 24, 36, 69, 135, 200, 212
BstENI CCTNNNNNAGG 1 cut(s) 119
BstF5I GGATG 1 cut(s) 174
BstKTI GATC 1 cut(s) 106
BstMAI GTCTC 2 cut(s) 76, 165
BstMBI GATC 1 cut(s) 103
BstMWI GCNNNNNNNGC 1 cut(s) 326
BstSFI CTRYAG 1 cut(s) 237
BstSLI GKGCMC 1 cut(s) 360
BstV1I GCAGC 1 cut(s) 142
BtsCI GGATG 1 cut(s) 174
BtsIMutI CAGTG 1 cut(s) 328
Cac8I GCNNGC 1 cut(s) 153
CviAII CATG 2 cut(s) 47, 350
DdeI CTNAG 6 cut(s) 24, 36, 69, 135, 200, 212
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
Eam1104I CTCTTC 3 cut(s) 99, 161, 299
EarI CTCTTC 3 cut(s) 99, 161, 299
Eco24I GRGCYC 1 cut(s) 390
EcoNI CCTNNNNNAGG 1 cut(s) 119
EcoT38I GRGCYC 1 cut(s) 390
FaeI CATG 2 cut(s) 50, 353
FaiI YATR 4 cut(s) 48, 290, 351, 392
FalI AAGNNNNNCTT 4 cut(s) 57, 89, 93, 125
FatI CATG 2 cut(s) 46, 349
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 1 cut(s) 161
FriOI GRGCYC 1 cut(s) 390
Fsp4HI GCNGC 1 cut(s) 156
GluI GCNGC 1 cut(s) 156
Hin1II CATG 2 cut(s) 50, 353
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HindIII AAGCTT 1 cut(s) 71
HphI GGTGA 2 cut(s) 35, 98
Hpy166II GTNNAC 3 cut(s) 58, 341, 358
Hpy188I TCNGA 2 cut(s) 37, 201
Hpy188III TCNNGA 1 cut(s) 262
Hpy8I GTNNAC 3 cut(s) 58, 341, 358
HpyAV CCTTC 2 cut(s) 201, 359
HpyCH4V TGCA 7 cut(s) 100, 151, 158, 223, 239, 358, 463
HpyF10VI GCNNNNNNNGC 1 cut(s) 326
HpyF3I CTNAG 6 cut(s) 24, 36, 69, 135, 200, 212
Hsp92II CATG 2 cut(s) 50, 353
Kzo9I GATC 1 cut(s) 103
LmnI GCTCC 1 cut(s) 385
LpnPI CCDG 2 cut(s) 275, 334
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 1 cut(s) 307
MaeIII GTNAC 1 cut(s) 130
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 8 cut(s) 86, 151, 154, 178, 216, 316, 383, 415
MfeI CAATTG 1 cut(s) 77
MhlI GDGCHC 2 cut(s) 360, 390
MluCI AATT 5 cut(s) 19, 77, 146, 189, 453
MmeI TCCRAC 2 cut(s) 300, 421
MnlI CCTC 8 cut(s) 31, 43, 118, 125, 207, 300, 451, 463
MroXI GAANNNNTTC 1 cut(s) 330
MseI TTAA 3 cut(s) 18, 422, 487
MslI CAYNNNNRTG 1 cut(s) 348
MunI CAATTG 1 cut(s) 77
MwoI GCNNNNNNNGC 1 cut(s) 326
NdeII GATC 1 cut(s) 103
NlaIII CATG 2 cut(s) 50, 353
NlaIV GGNNCC 1 cut(s) 387
PdmI GAANNNNTTC 1 cut(s) 330
PkrI GCNGC 1 cut(s) 157
PspN4I GGNNCC 1 cut(s) 387
PstI CTGCAG 1 cut(s) 241
RseI CAYNNNNRTG 1 cut(s) 348
SaqAI TTAA 3 cut(s) 18, 422, 487
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 1 cut(s) 103
SduI GDGCHC 2 cut(s) 360, 390
SfaNI GCATC 1 cut(s) 307
SfcI CTRYAG 1 cut(s) 237
SmiMI CAYNNNNRTG 1 cut(s) 348
Sse9I AATT 5 cut(s) 19, 77, 146, 189, 453
TasI AATT 5 cut(s) 19, 77, 146, 189, 453
Tru1I TTAA 3 cut(s) 18, 422, 487
Tru9I TTAA 3 cut(s) 18, 422, 487
TscAI CASTG 1 cut(s) 328
TseI GCWGC 1 cut(s) 155
TspDTI ATGAA 2 cut(s) 17, 282
TspRI CASTG 1 cut(s) 328
VneI GTGCAC 1 cut(s) 356
XagI CCTNNNNNAGG 1 cut(s) 119
XmnI GAANNNNTTC 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.