Prupe.1G394700_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
35074548 .. 35076499
1952 bp
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UTR
Exon/CDS
Intron
Prupe.1G394700.1

Sequence Viewer

Length: 474 bp
ATGAAAAGGGTTGCTGTTAATTCTCATAAATCTCAGCCTGATGATGAGGAAGCTAGGCTTAATTTTAGACATGAAAGTCTTCTGCAAGATTACCTTGAACGACAAAAGGAATTTGTATCAAAGAAGAAGAAATTGCAAGCAGCAAGGCAGAAAAGAGACATCCTTTTGGGTGAAATTCGATTTTTGAGACGAAGGCATAGGCATCTGCTGAAGATAAAATCAGCAGAGACTGAACCAGAAGTCCAACAACAGAAGTCTGACACACAACCTAAGAAGTTTTCAAGGAAAAGGAAAAGTGATGCAAATGAAGCTGTTCTAAATAAACCATCCCAAGTCTCGCCGGAAGGAGGAGGTGAACAAATTGTTTCAGAACCCATAAGAGTAGAGAAGAAGCCTAAAAATTGCCTAGTCGATGACAAAAAAGTGGGAAAGAAAAAAATTGCTTTGCAAGATCAGGTTGCTTTGAATGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

18.23

Weight (kDa)

10.03

Isoelectric Point (pI)

59.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014978)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30630 AT4G30630
fragaria_vesca FvH4_2g41181
malus_domestica MD08G1055700.v1.1 MD15G1041800.v1.1
prunus_persica Prupe.1G394700_v2.0.a1
pyrus_communis pycom08g04570
rosa_chinensis RchiOBHm_Chr6g0299341
rosa_laevigata RLG00000011441
rosa_multiflora Rmu_ssc0000374.1_g000004
rosa_rugosa Rorug06G0287300
rosa_samantha Rh6AG398900 Rh6BG407300 Rh6CG413200 Rh6DG400100
rosa_wichuraiana Rw6G034920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 75
AcsI RAATTY 2 cut(s) 110, 174
AcuI CTGAAG 1 cut(s) 230
AfiI CCNNNNNNNGG 1 cut(s) 347
AgsI TTSAA 3 cut(s) 98, 282, 466
AloI GAACNNNNNNTCC 2 cut(s) 225, 257
AluBI AGCT 2 cut(s) 53, 311
AluI AGCT 2 cut(s) 53, 311
Alw26I GTCTC 4 cut(s) 150, 181, 221, 340
AlwNI CAGNNNCTG 1 cut(s) 230
ApeKI GCWGC 1 cut(s) 140
ApoI RAATTY 2 cut(s) 110, 174
Asp700I GAANNNNTTC 2 cut(s) 78, 312
AsuHPI GGTGA 2 cut(s) 182, 365
BbsI GAAGAC 1 cut(s) 71
BbvI GCAGC 1 cut(s) 152
BccI CCATC 1 cut(s) 334
BcoDI GTCTC 4 cut(s) 150, 181, 221, 340
BfaI CTAG 2 cut(s) 54, 407
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
BmsI GCATC 2 cut(s) 211, 289
BpiI GAAGAC 1 cut(s) 71
Bsc4I CCNNNNNNNGG 1 cut(s) 347
BseGI GGATG 2 cut(s) 159, 326
BseLI CCNNNNNNNGG 1 cut(s) 347
BseMII CTCAG 1 cut(s) 47
BseRI GAGGAG 1 cut(s) 363
BseXI GCAGC 1 cut(s) 152
BsiSI CCGG 1 cut(s) 341
BslI CCNNNNNNNGG 1 cut(s) 347
BsmAI GTCTC 4 cut(s) 150, 181, 221, 340
BsmBI CGTCTC 1 cut(s) 181
Bsp143I GATC 1 cut(s) 451
BspCNI CTCAG 1 cut(s) 46
BssMI GATC 1 cut(s) 451
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 2 cut(s) 33, 270
BstF5I GGATG 2 cut(s) 159, 326
BstKTI GATC 1 cut(s) 454
BstMAI GTCTC 4 cut(s) 150, 181, 221, 340
BstMBI GATC 1 cut(s) 451
BstMWI GCNNNNNNNGC 1 cut(s) 308
BstV1I GCAGC 1 cut(s) 152
BstV2I GAAGAC 1 cut(s) 71
BtsCI GGATG 2 cut(s) 159, 326
Cac8I GCNNGC 1 cut(s) 138
CaiI CAGNNNCTG 1 cut(s) 230
CviAII CATG 1 cut(s) 71
CviJI RGCY 5 cut(s) 37, 53, 58, 311, 394
CviKI_1 RGCY 5 cut(s) 37, 53, 58, 311, 394
DdeI CTNAG 2 cut(s) 33, 270
DpnI GATC 1 cut(s) 453
DpnII GATC 1 cut(s) 451
DrdI GACNNNNNNGTC 1 cut(s) 75
DseDI GACNNNNNNGTC 1 cut(s) 75
Eco57I CTGAAG 1 cut(s) 230
Esp3I CGTCTC 1 cut(s) 181
FaeI CATG 1 cut(s) 74
FaiI YATR 5 cut(s) 27, 72, 198, 377, 472
FalI AAGNNNNNCTT 4 cut(s) 42, 74, 78, 110
FatI CATG 1 cut(s) 70
Fnu4HI GCNGC 1 cut(s) 141
FokI GGATG 2 cut(s) 146, 313
Fsp4HI GCNGC 1 cut(s) 141
FspBI CTAG 2 cut(s) 54, 407
GluI GCNGC 1 cut(s) 141
HapII CCGG 1 cut(s) 341
Hin1II CATG 1 cut(s) 74
HpaII CCGG 1 cut(s) 341
HphI GGTGA 2 cut(s) 182, 365
Hpy166II GTNNAC 1 cut(s) 356
Hpy188I TCNGA 2 cut(s) 259, 370
Hpy8I GTNNAC 1 cut(s) 356
HpyAV CCTTC 2 cut(s) 186, 338
HpyCH4V TGCA 4 cut(s) 85, 136, 302, 448
HpyF10VI GCNNNNNNNGC 1 cut(s) 308
HpyF3I CTNAG 2 cut(s) 33, 270
Hsp92II CATG 1 cut(s) 74
Kzo9I GATC 1 cut(s) 451
LpnPI CCDG 4 cut(s) 51, 249, 354, 440
Lsp1109I GCAGC 1 cut(s) 152
LweI GCATC 2 cut(s) 211, 289
MaeI CTAG 2 cut(s) 54, 407
MalI GATC 1 cut(s) 453
MboI GATC 1 cut(s) 451
MboII GAAGA 5 cut(s) 71, 136, 139, 223, 400
MluCI AATT 8 cut(s) 19, 61, 110, 131, 174, 360, 400, 438
MmeI TCCRAC 1 cut(s) 268
MnlI CCTC 3 cut(s) 40, 341, 344
MroXI GAANNNNTTC 2 cut(s) 78, 312
MseI TTAA 2 cut(s) 18, 60
MspI CCGG 1 cut(s) 341
MwoI GCNNNNNNNGC 1 cut(s) 308
NdeII GATC 1 cut(s) 451
NlaIII CATG 1 cut(s) 74
PdmI GAANNNNTTC 2 cut(s) 78, 312
PkrI GCNGC 1 cut(s) 142
PstNI CAGNNNCTG 1 cut(s) 230
SaqAI TTAA 2 cut(s) 18, 60
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 1 cut(s) 451
SetI ASST 6 cut(s) 55, 96, 271, 313, 355, 459
SfaNI GCATC 2 cut(s) 211, 289
Sse9I AATT 8 cut(s) 19, 61, 110, 131, 174, 360, 400, 438
SspMI CTAG 2 cut(s) 54, 407
TaqI TCGA 2 cut(s) 178, 411
TasI AATT 8 cut(s) 19, 61, 110, 131, 174, 360, 400, 438
Tru1I TTAA 2 cut(s) 18, 60
Tru9I TTAA 2 cut(s) 18, 60
TseI GCWGC 1 cut(s) 140
TspDTI ATGAA 3 cut(s) 17, 87, 321
XapI RAATTY 2 cut(s) 110, 174
XmnI GAANNNNTTC 2 cut(s) 78, 312
XspI CTAG 2 cut(s) 54, 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.