Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0014978

Physical Location & Seq

Genomic Coordinates Reverse (-)

29183122 .. 29184074

Gene Structure 953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g41181.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGAAAAGGGTGGCTGTTAATCCTAAGACCACCTCTCAGGCTCACCCCGCTGTTGACGACCAAGCTAAGCTTCAACTCAGACATCAAACTCTTCTGCAAGATCACCTTCATCTCCAAAAGGAGGTTGTAACTAAGAAGAAGAAACTGCAAGCTGCAAAGCAGAAGAGAGACATCCTTTTGGCTGAAATTCGATTTCTGAGAAGAAGGCAGAGGCATTTGCTGAAGCTTAAATCTGCAGAAACCGAACCACAAGTTGTCCAGCATGAAACTTCCAACACAAAACTCAAAAAGTTTTCAAGGAAAAGGAACAATGATGCCAGTGAGGCTGTTCCAAGTAAACACTCCCAAGTGGTGGTGAAGGAAGAAGGAGAACAGCTTGTATGGGAGCCCCTTAGGGTAGAGAAGAAGTCTAGAACCAGGTTAATCAATGACAAACGGATTGGAAAGAGAAAAATCGATGTGCAGGATGAGGTTGCTTTGAATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

18.9

Weight (kDa)

10.42

Isoelectric Point (pI)

57.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30630 AT4G30630
fragaria_vesca	FvH4_2g41181
malus_domestica	MD08G1055700.v1.1 MD15G1041800.v1.1
prunus_persica	Prupe.1G394700_v2.0.a1
pyrus_communis	pycom08g04570
rosa_chinensis	RchiOBHm_Chr6g0299341
rosa_laevigata	RLG00000011441
rosa_multiflora	Rmu_ssc0000374.1_g000004
rosa_rugosa	Rorug06G0287300
rosa_samantha	Rh6AG398900 Rh6BG407300 Rh6CG413200 Rh6DG400100
rosa_wichuraiana	Rw6G034920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	352
AciI	CCGC	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	186
AcuI	CTGAAG	1 cut(s)	242
AfiI	CCNNNNNNNGG	2 cut(s)	121, 352
AgsI	TTSAA	3 cut(s)	74, 297, 481
AjnI	CCWGG	1 cut(s)	416
AjuI	GAANNNNNNNTTGG	2 cut(s)	54, 86
AluBI	AGCT	5 cut(s)	65, 70, 152, 226, 376
AluI	AGCT	5 cut(s)	65, 70, 152, 226, 376
Alw26I	GTCTC	1 cut(s)	162
ApeKI	GCWGC	1 cut(s)	152
ApoI	RAATTY	1 cut(s)	186
AsuHPI	GGTGA	3 cut(s)	35, 95, 367
AxyI	CCTNAGG	1 cut(s)	392
BanII	GRGCYC	1 cut(s)	390
BbvI	GCAGC	1 cut(s)	139
BciT130I	CCWGG	1 cut(s)	418
BcoDI	GTCTC	1 cut(s)	162
BfaI	CTAG	1 cut(s)	411
BfmI	CTRYAG	1 cut(s)	234
BglI	GCCNNNNNGGC	1 cut(s)	323
BisI	GCNGC	1 cut(s)	153
BlpI	GCTNAGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	154
Bme1390I	CCNGG	1 cut(s)	418
BmiI	GGNNCC	1 cut(s)	387
BmrFI	CCNGG	1 cut(s)	418
BmsI	GCATC	1 cut(s)	304
Bpu1102I	GCTNAGC	1 cut(s)	66
Bsa29I	ATCGAT	1 cut(s)	456
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 352
Bse1I	ACTGG	1 cut(s)	318
Bse21I	CCTNAGG	1 cut(s)	392
BseBI	CCWGG	1 cut(s)	418
BseCI	ATCGAT	1 cut(s)	456
BseGI	GGATG	2 cut(s)	171, 472
BseLI	CCNNNNNNNGG	2 cut(s)	121, 352
BseMII	CTCAG	3 cut(s)	50, 91, 188
BseNI	ACTGG	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	139
BsgI	GTGCAG	1 cut(s)	482
BshVI	ATCGAT	1 cut(s)	456
BslI	CCNNNNNNNGG	2 cut(s)	121, 352
BsmAI	GTCTC	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp143I	GATC	1 cut(s)	100
Bsp1720I	GCTNAGC	1 cut(s)	66
BspACI	CCGC	1 cut(s)	48
BspCNI	CTCAG	3 cut(s)	49, 90, 189
BspDI	ATCGAT	1 cut(s)	456
BspLI	GGNNCC	1 cut(s)	387
BspMAI	CTGCAG	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	318
BssMI	GATC	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	418
Bst6I	CTCTTC	2 cut(s)	96, 158
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	7 cut(s)	24, 36, 66, 77, 132, 197, 392
BstF5I	GGATG	2 cut(s)	171, 472
BstKTI	GATC	1 cut(s)	103
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 323
BstNI	CCWGG	1 cut(s)	418
BstSCI	CCNGG	1 cut(s)	416
BstSFI	CTRYAG	1 cut(s)	234
BstV1I	GCAGC	1 cut(s)	139
Bsu15I	ATCGAT	1 cut(s)	456
Bsu36I	CCTNAGG	1 cut(s)	392
BsuTUI	ATCGAT	1 cut(s)	456
BtsCI	GGATG	2 cut(s)	171, 472
BtsIMutI	CAGTG	1 cut(s)	325
Cac8I	GCNNGC	1 cut(s)	150
ClaI	ATCGAT	1 cut(s)	456
CsiI	ACCWGGT	1 cut(s)	416
CviAII	CATG	1 cut(s)	263
DdeI	CTNAG	7 cut(s)	24, 36, 66, 77, 132, 197, 392
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
Eam1104I	CTCTTC	2 cut(s)	96, 158
EarI	CTCTTC	2 cut(s)	96, 158
Eco24I	GRGCYC	1 cut(s)	390
Eco57I	CTGAAG	1 cut(s)	242
Eco81I	CCTNAGG	1 cut(s)	392
EcoRII	CCWGG	1 cut(s)	416
EcoT38I	GRGCYC	1 cut(s)	390
FaeI	CATG	1 cut(s)	266
FaiI	YATR	2 cut(s)	264, 382
FalI	AAGNNNNNCTT	4 cut(s)	54, 86, 90, 122
FatI	CATG	1 cut(s)	262
FauI	CCCGC	1 cut(s)	55
Fnu4HI	GCNGC	1 cut(s)	153
FokI	GGATG	2 cut(s)	158, 479
FriOI	GRGCYC	1 cut(s)	390
Fsp4HI	GCNGC	1 cut(s)	153
FspBI	CTAG	1 cut(s)	411
GluI	GCNGC	1 cut(s)	153
Hin1II	CATG	1 cut(s)	266
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HindIII	AAGCTT	2 cut(s)	68, 224
HphI	GGTGA	3 cut(s)	35, 95, 367
Hpy166II	GTNNAC	2 cut(s)	55, 338
Hpy188I	TCNGA	2 cut(s)	80, 198
Hpy188III	TCNNGA	1 cut(s)	411
Hpy8I	GTNNAC	2 cut(s)	55, 338
HpyAV	CCTTC	4 cut(s)	116, 198, 352, 359
HpyCH4V	TGCA	5 cut(s)	97, 148, 155, 236, 463
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 323
HpyF3I	CTNAG	7 cut(s)	24, 36, 66, 77, 132, 197, 392
Hsp92II	CATG	1 cut(s)	266
Kzo9I	GATC	1 cut(s)	100
LmnI	GCTCC	1 cut(s)	385
LpnPI	CCDG	6 cut(s)	23, 272, 331, 403, 430, 449
Lsp1109I	GCAGC	1 cut(s)	139
LweI	GCATC	1 cut(s)	304
MabI	ACCWGGT	1 cut(s)	416
MaeI	CTAG	1 cut(s)	411
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MboII	GAAGA	7 cut(s)	83, 148, 151, 175, 213, 374, 415
MhlI	GDGCHC	1 cut(s)	390
MluCI	AATT	1 cut(s)	186
MmeI	TCCRAC	1 cut(s)	297
MnlI	CCTC	5 cut(s)	43, 115, 204, 316, 463
MseI	TTAA	4 cut(s)	18, 228, 422, 487
MspA1I	CMGCKG	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	418
MvaI	CCWGG	1 cut(s)	418
MwoI	GCNNNNNNNGC	2 cut(s)	47, 323
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	1 cut(s)	266
NlaIV	GGNNCC	1 cut(s)	387
PflMI	CCANNNNNTGG	1 cut(s)	352
PkrI	GCNGC	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	416
PspGI	CCWGG	1 cut(s)	416
PspN4I	GGNNCC	1 cut(s)	387
PstI	CTGCAG	1 cut(s)	238
SaqAI	TTAA	4 cut(s)	18, 228, 422, 487
SatI	GCNGC	1 cut(s)	153
Sau3AI	GATC	1 cut(s)	100
ScrFI	CCNGG	1 cut(s)	418
SduI	GDGCHC	1 cut(s)	390
SexAI	ACCWGGT	1 cut(s)	416
SfaNI	GCATC	1 cut(s)	304
SfcI	CTRYAG	1 cut(s)	234
Sse9I	AATT	1 cut(s)	186
SsiI	CCGC	1 cut(s)	48
SspMI	CTAG	1 cut(s)	411
StyD4I	CCNGG	1 cut(s)	416
TaqI	TCGA	2 cut(s)	190, 456
TasI	AATT	1 cut(s)	186
Tru1I	TTAA	4 cut(s)	18, 228, 422, 487
Tru9I	TTAA	4 cut(s)	18, 228, 422, 487
TscAI	CASTG	1 cut(s)	325
TseI	GCWGC	1 cut(s)	152
TspDTI	ATGAA	3 cut(s)	17, 98, 279
TspGWI	ACGGA	1 cut(s)	451
TspRI	CASTG	1 cut(s)	325
Van91I	CCANNNNNTGG	1 cut(s)	352
XapI	RAATTY	1 cut(s)	186
XbaI	TCTAGA	1 cut(s)	410
XspI	CTAG	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.