MD15G1041800.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
2925728 .. 2927834
2107 bp
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UTR
Exon/CDS
Intron
MD15G1041800.v1.1.491

Sequence Viewer

Length: 393 bp
ATGAAAAGGGCTGCTGGCAATTCCAAGCAGTCTCAGCCTGCTGATGAGGAAACTAGGATGAAGTTCAGACATGAAAGTCTTCTGCAAGATTACCTCGAACGACAAAAGGAATTTGTATCAAAGAAGAAGAAGTTGCAAGCTGCAAAGCAGAAGAGAGACATTCTTTTGGCAGAAACTCGATTTTTGAGACGAAGGCATAGCCATATGCTGAAGATAAAATCAGCAGAAACCGAACCAGAAGCCCGACATCAGAATTCTGATGTACAACCTAAGAAGTTGGCAAAGAAGAGGAGAAAAGATGCCAATGAAGCTGTTCTAAATAAACCCTCTCATGTCTCGCCGGAAGAAGGAACGCATTGTTTCGGAGCCCGGAAGAGTAGAGAGGAAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

15.19

Weight (kDa)

10.16

Isoelectric Point (pI)

75.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014978)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30630 AT4G30630
fragaria_vesca FvH4_2g41181
malus_domestica MD08G1055700.v1.1 MD15G1041800.v1.1
prunus_persica Prupe.1G394700_v2.0.a1
pyrus_communis pycom08g04570
rosa_chinensis RchiOBHm_Chr6g0299341
rosa_laevigata RLG00000011441
rosa_multiflora Rmu_ssc0000374.1_g000004
rosa_rugosa Rorug06G0287300
rosa_samantha Rh6AG398900 Rh6BG407300 Rh6CG413200 Rh6DG400100
rosa_wichuraiana Rw6G034920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 75
AcsI RAATTY 2 cut(s) 110, 253
AcuI CTGAAG 1 cut(s) 230
AfaI GTAC 1 cut(s) 264
AfiI CCNNNNNNNGG 1 cut(s) 347
AluBI AGCT 2 cut(s) 140, 311
AluI AGCT 2 cut(s) 140, 311
Alw26I GTCTC 4 cut(s) 36, 150, 181, 340
ApeKI GCWGC 2 cut(s) 11, 140
ApoI RAATTY 2 cut(s) 110, 253
Asp700I GAANNNNTTC 2 cut(s) 78, 312
AsuC2I CCSGG 1 cut(s) 370
BanII GRGCYC 1 cut(s) 370
BbsI GAAGAC 1 cut(s) 71
BbvI GCAGC 1 cut(s) 127
BcnI CCSGG 1 cut(s) 370
BcoDI GTCTC 4 cut(s) 36, 150, 181, 340
BfaI CTAG 1 cut(s) 54
BisI GCNGC 2 cut(s) 12, 141
BlsI GCNGC 2 cut(s) 13, 142
Bme1390I CCNGG 1 cut(s) 370
BmiI GGNNCC 1 cut(s) 367
BmrFI CCNGG 1 cut(s) 370
BmsI GCATC 1 cut(s) 289
BpiI GAAGAC 1 cut(s) 71
BpuMI CCSGG 1 cut(s) 370
Bsc4I CCNNNNNNNGG 1 cut(s) 347
BseGI GGATG 1 cut(s) 63
BseLI CCNNNNNNNGG 1 cut(s) 347
BseMII CTCAG 1 cut(s) 47
BseRI GAGGAG 1 cut(s) 304
BseXI GCAGC 1 cut(s) 127
BsiSI CCGG 2 cut(s) 341, 370
BslI CCNNNNNNNGG 1 cut(s) 347
BsmAI GTCTC 4 cut(s) 36, 150, 181, 340
BsmBI CGTCTC 1 cut(s) 181
Bsp1286I GDGCHC 1 cut(s) 370
Bsp1407I TGTACA 1 cut(s) 262
BspCNI CTCAG 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 367
BsrGI TGTACA 1 cut(s) 262
Bst6I CTCTTC 3 cut(s) 146, 281, 368
BstAUI TGTACA 1 cut(s) 262
BstC8I GCNNGC 3 cut(s) 16, 39, 138
BstDEI CTNAG 2 cut(s) 33, 270
BstF5I GGATG 1 cut(s) 63
BstMAI GTCTC 4 cut(s) 36, 150, 181, 340
BstMWI GCNNNNNNNGC 2 cut(s) 34, 308
BstSCI CCNGG 1 cut(s) 368
BstV1I GCAGC 1 cut(s) 127
BstV2I GAAGAC 1 cut(s) 71
BtsCI GGATG 1 cut(s) 63
Cac8I GCNNGC 3 cut(s) 16, 39, 138
Csp6I GTAC 1 cut(s) 263
CviAII CATG 2 cut(s) 71, 332
CviJI RGCY 8 cut(s) 11, 37, 140, 201, 242, 311, 368, 389
CviKI_1 RGCY 8 cut(s) 11, 37, 140, 201, 242, 311, 368, 389
CviQI GTAC 1 cut(s) 263
DdeI CTNAG 2 cut(s) 33, 270
DrdI GACNNNNNNGTC 1 cut(s) 75
DseDI GACNNNNNNGTC 1 cut(s) 75
Eam1104I CTCTTC 3 cut(s) 146, 281, 368
EarI CTCTTC 3 cut(s) 146, 281, 368
Eco24I GRGCYC 1 cut(s) 370
Eco57I CTGAAG 1 cut(s) 230
EcoRI GAATTC 1 cut(s) 253
EcoT38I GRGCYC 1 cut(s) 370
Esp3I CGTCTC 1 cut(s) 181
FaeI CATG 2 cut(s) 74, 335
FaiI YATR 5 cut(s) 72, 198, 204, 206, 333
FatI CATG 2 cut(s) 70, 331
FauNDI CATATG 1 cut(s) 204
Fnu4HI GCNGC 2 cut(s) 12, 141
FokI GGATG 1 cut(s) 70
FriOI GRGCYC 1 cut(s) 370
Fsp4HI GCNGC 2 cut(s) 12, 141
FspBI CTAG 1 cut(s) 54
GluI GCNGC 2 cut(s) 12, 141
HapII CCGG 2 cut(s) 341, 370
Hin1II CATG 2 cut(s) 74, 335
HpaII CCGG 2 cut(s) 341, 370
Hpy188I TCNGA 4 cut(s) 68, 252, 259, 365
HpyAV CCTTC 2 cut(s) 186, 341
HpyCH4V TGCA 3 cut(s) 85, 136, 143
HpyF10VI GCNNNNNNNGC 2 cut(s) 34, 308
HpyF3I CTNAG 2 cut(s) 33, 270
Hsp92II CATG 2 cut(s) 74, 335
LmnI GCTCC 1 cut(s) 365
LpnPI CCDG 4 cut(s) 51, 249, 354, 383
Lsp1109I GCAGC 1 cut(s) 127
LweI GCATC 1 cut(s) 289
MaeI CTAG 1 cut(s) 54
MboII GAAGA 8 cut(s) 71, 136, 139, 163, 223, 298, 356, 385
MhlI GDGCHC 1 cut(s) 370
MluCI AATT 3 cut(s) 19, 110, 253
MnlI CCTC 5 cut(s) 40, 104, 282, 337, 376
MroXI GAANNNNTTC 2 cut(s) 78, 312
MspI CCGG 2 cut(s) 341, 370
MspR9I CCNGG 1 cut(s) 370
MwoI GCNNNNNNNGC 2 cut(s) 34, 308
NciI CCSGG 1 cut(s) 370
NdeI CATATG 1 cut(s) 204
NlaIII CATG 2 cut(s) 74, 335
NlaIV GGNNCC 1 cut(s) 367
PdmI GAANNNNTTC 2 cut(s) 78, 312
PkrI GCNGC 2 cut(s) 13, 142
PspN4I GGNNCC 1 cut(s) 367
RsaI GTAC 1 cut(s) 264
RsaNI GTAC 1 cut(s) 263
SatI GCNGC 2 cut(s) 12, 141
ScrFI CCNGG 1 cut(s) 370
SduI GDGCHC 1 cut(s) 370
SetI ASST 4 cut(s) 96, 142, 271, 313
SfaNI GCATC 1 cut(s) 289
Sse9I AATT 3 cut(s) 19, 110, 253
SspMI CTAG 1 cut(s) 54
StyD4I CCNGG 1 cut(s) 368
TaqI TCGA 2 cut(s) 96, 178
TasI AATT 3 cut(s) 19, 110, 253
TatI WGTACW 1 cut(s) 262
TseI GCWGC 2 cut(s) 11, 140
TspDTI ATGAA 4 cut(s) 17, 74, 87, 321
XapI RAATTY 2 cut(s) 110, 253
XmnI GAANNNNTTC 2 cut(s) 78, 312
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.