RLG00000011441

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
9469944 .. 9470915
972 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011441

Sequence Viewer

Length: 468 bp
ATGAAAAGGGTGGCTGTTAATTCTAAGAACACCTCTGAGGCACACCATGTTGTTGACGACCAAGCTAAGCTTCAATTGAGACATCAAACTCTTCTGCAAGATCACCTTGACCTCCAAAAGGAGGTTGTAACTAAGAAGAAGAAATTGCAAGCTGCAAAGCAGAAGAGACACATCCTTTTGGCTGAAATTGGATTTCTGAGAAGAAGGCTGAGGCATTTGCAGAAGCTAAAATCTGCGGAAACCGAACCAAAAGTTGTCCAGCATGAAACTTCCAACACAAAAACTAAAAAGTTTTCAAGGAAGAGGAACAATGATGCCAGTGAAGCTGTTCCAAGTAAACAAGAAGGAGAAGAACTTGTTTGGGAGCCCATAAGAGTAGAGAAGAAGTCTAAAACTTGGTTGATCAATGACAAACGAGTTGGAAAGAGAAAAATTGAAGTGCAAGATGAGGTTGCTTTGAATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

18.09

Weight (kDa)

10.13

Isoelectric Point (pI)

64.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014978)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30630 AT4G30630
fragaria_vesca FvH4_2g41181
malus_domestica MD08G1055700.v1.1 MD15G1041800.v1.1
prunus_persica Prupe.1G394700_v2.0.a1
pyrus_communis pycom08g04570
rosa_chinensis RchiOBHm_Chr6g0299341
rosa_laevigata RLG00000011441
rosa_multiflora Rmu_ssc0000374.1_g000004
rosa_rugosa Rorug06G0287300
rosa_samantha Rh6AG398900 Rh6BG407300 Rh6CG413200 Rh6DG400100
rosa_wichuraiana Rw6G034920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 236
AfiI CCNNNNNNNGG 2 cut(s) 118, 121
AgsI TTSAA 4 cut(s) 74, 297, 437, 460
AjuI GAANNNNNNNTTGG 2 cut(s) 54, 86
AluBI AGCT 5 cut(s) 65, 70, 152, 226, 326
AluI AGCT 5 cut(s) 65, 70, 152, 226, 326
Alw26I GTCTC 2 cut(s) 73, 160
ApeKI GCWGC 1 cut(s) 152
Asp700I GAANNNNTTC 1 cut(s) 327
AsuHPI GGTGA 1 cut(s) 95
BanII GRGCYC 1 cut(s) 369
BbvCI CCTCAGC 1 cut(s) 209
BbvI GCAGC 1 cut(s) 139
BclI TGATCA 1 cut(s) 402
BcoDI GTCTC 2 cut(s) 73, 160
BisI GCNGC 1 cut(s) 153
BlpI GCTNAGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 154
BmiI GGNNCC 1 cut(s) 366
BmsI GCATC 1 cut(s) 304
Bpu10I CCTNAGC 1 cut(s) 209
Bpu1102I GCTNAGC 1 cut(s) 66
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 121
Bse1I ACTGG 1 cut(s) 318
BseGI GGATG 1 cut(s) 171
BseLI CCNNNNNNNGG 2 cut(s) 118, 121
BseMII CTCAG 3 cut(s) 27, 188, 200
BseNI ACTGG 1 cut(s) 318
BseXI GCAGC 1 cut(s) 139
BslI CCNNNNNNNGG 2 cut(s) 118, 121
BsmAI GTCTC 2 cut(s) 73, 160
Bsp1286I GDGCHC 1 cut(s) 369
Bsp143I GATC 2 cut(s) 100, 402
Bsp1720I GCTNAGC 1 cut(s) 66
BspACI CCGC 1 cut(s) 236
BspCNI CTCAG 3 cut(s) 28, 189, 201
BspLI GGNNCC 1 cut(s) 366
BsrI ACTGG 1 cut(s) 318
BssMI GATC 2 cut(s) 100, 402
Bst6I CTCTTC 3 cut(s) 96, 158, 296
BstC8I GCNNGC 1 cut(s) 150
BstDEI CTNAG 6 cut(s) 24, 36, 66, 132, 197, 209
BstENI CCTNNNNNAGG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 171
BstKTI GATC 2 cut(s) 103, 405
BstMAI GTCTC 2 cut(s) 73, 160
BstMBI GATC 2 cut(s) 100, 402
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstV1I GCAGC 1 cut(s) 139
BtsCI GGATG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 325
Cac8I GCNNGC 1 cut(s) 150
CviAII CATG 2 cut(s) 47, 263
CviJI RGCY 9 cut(s) 14, 65, 70, 152, 182, 208, 226, 326, 367
CviKI_1 RGCY 9 cut(s) 14, 65, 70, 152, 182, 208, 226, 326, 367
DdeI CTNAG 6 cut(s) 24, 36, 66, 132, 197, 209
DpnI GATC 2 cut(s) 102, 404
DpnII GATC 2 cut(s) 100, 402
Eam1104I CTCTTC 3 cut(s) 96, 158, 296
EarI CTCTTC 3 cut(s) 96, 158, 296
Eco24I GRGCYC 1 cut(s) 369
EcoNI CCTNNNNNAGG 1 cut(s) 116
EcoT38I GRGCYC 1 cut(s) 369
FaeI CATG 2 cut(s) 50, 266
FaiI YATR 3 cut(s) 48, 264, 371
FalI AAGNNNNNCTT 4 cut(s) 54, 86, 90, 122
FatI CATG 2 cut(s) 46, 262
FbaI TGATCA 1 cut(s) 402
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 1 cut(s) 158
FriOI GRGCYC 1 cut(s) 369
Fsp4HI GCNGC 1 cut(s) 153
GluI GCNGC 1 cut(s) 153
Hin1II CATG 2 cut(s) 50, 266
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HindIII AAGCTT 1 cut(s) 68
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 2 cut(s) 55, 338
Hpy188I TCNGA 2 cut(s) 37, 198
Hpy8I GTNNAC 2 cut(s) 55, 338
HpyAV CCTTC 2 cut(s) 198, 338
HpyCH4V TGCA 5 cut(s) 97, 148, 155, 220, 442
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpyF3I CTNAG 6 cut(s) 24, 36, 66, 132, 197, 209
Hsp92II CATG 2 cut(s) 50, 266
Ksp22I TGATCA 1 cut(s) 402
Kzo9I GATC 2 cut(s) 100, 402
LmnI GCTCC 1 cut(s) 364
LpnPI CCDG 2 cut(s) 272, 331
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 1 cut(s) 304
MaeIII GTNAC 1 cut(s) 127
MalI GATC 2 cut(s) 102, 404
MboI GATC 2 cut(s) 100, 402
MboII GAAGA 8 cut(s) 83, 148, 151, 175, 213, 313, 362, 394
MfeI CAATTG 1 cut(s) 74
MhlI GDGCHC 1 cut(s) 369
MluCI AATT 5 cut(s) 19, 74, 143, 186, 432
MmeI TCCRAC 2 cut(s) 297, 400
MnlI CCTC 7 cut(s) 31, 43, 115, 122, 204, 297, 442
MroXI GAANNNNTTC 1 cut(s) 327
MseI TTAA 2 cut(s) 18, 466
MunI CAATTG 1 cut(s) 74
MwoI GCNNNNNNNGC 1 cut(s) 323
NdeII GATC 2 cut(s) 100, 402
NlaIII CATG 2 cut(s) 50, 266
NlaIV GGNNCC 1 cut(s) 366
PdmI GAANNNNTTC 1 cut(s) 327
PkrI GCNGC 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 366
SaqAI TTAA 2 cut(s) 18, 466
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 2 cut(s) 100, 402
SduI GDGCHC 1 cut(s) 369
SfaNI GCATC 1 cut(s) 304
Sse9I AATT 5 cut(s) 19, 74, 143, 186, 432
SsiI CCGC 1 cut(s) 236
TasI AATT 5 cut(s) 19, 74, 143, 186, 432
Tru1I TTAA 2 cut(s) 18, 466
Tru9I TTAA 2 cut(s) 18, 466
TscAI CASTG 1 cut(s) 325
TseI GCWGC 1 cut(s) 152
TspDTI ATGAA 2 cut(s) 17, 279
TspRI CASTG 1 cut(s) 325
XagI CCTNNNNNAGG 1 cut(s) 116
XmnI GAANNNNTTC 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.