Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015823

Physical Location & Seq

Genomic Coordinates Forward (+)

15067028 .. 15069183

Gene Structure 2156 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G30960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGGTCGGAGCAAAACCGGTGGAGAATGGATCTGACGGTGGTAGTAGTACGGGGCTGCTTCACGGCCGTTACGAGCTAGGGCGTCTTCTAGGTCACGGAACATTCGCGAAGGTGTACCACGCTCGTAACATACAAACCGGAAAAAGCGTGGCGATGAAAGTCGTCGGAAAAGAGAAAGTGGTGAAAGTTGGTATGGTTGATCAGATCAAACGAGAGATCTCTGTGATGAGGATGGTGAAACATCCAAACATCGTCGAGCTTCACGAAGTCATGGCGAGTAAATCCAAGATCTATTTCGCCATGGAGCTTGTACGAGGCGGTGAGTTATTCGCTAAGGTGGCTAAAGGAAGACTACGTGAAGACGTAGCTCGTGTTTATTTCCAGCAATTGATCTCAGCCGTTGATTTCTGTCATAGCCGTGGTGTTTATCACCGAGATCTGAAACCGGAGAATCTCTTGTTAGATGAAGAAGGTAATCTCAAGGTGACTGATTTTGGTCTCTCTGCTTTCACTGAGCATTTGAAACAAGACGGACTTCTTCATACAACTTGTGGAACTCCGGCTTATGTTGCGCCGGAGGTTATATTGAAGAAAGGATACGACGGAGCTAAGGCGGATCTGTGGTCTTGTGGTGTTATACTTTTTGTGCTTCTTGCTGGTTATTTGCCGTTTCAAGATGATAATCTTGTGAATATGTATAGGAAGATTTACAGAGGAGATTTCAAATGTCCTGGTTGGCTTTCTTCTGATGCTAGACGGCTTGTGACTAAGCTTCTTGATCCGAATCCGAATACGAGGATTACTATTGAGAAGGTTATGGATTCGCCTTGGTTCAAGAAACAAGCAACGAGATCAAGAAACGAACCAGTGGCTGCCACAATCACAACCACGGAAGAGGATGTTGATTTCTTGGTGCACAAGTCGAAGGAAGAGACGGAGACGTTAAACGCGTTTCATATAATCGCGTTATCGGAAGGGTTTGATTTGTCGCCGTTGTTTGAGGAGAAGAAGAAAGAGGAGAAAAGAGAGATGAGATTCGCGACGTCTCGGCCAGCGAGTAGCGTGATTTCGAGTTTGGAAGAAGCGGCGAGAGTTGGGAATAAGTTTGATGTGAGGAAGAGTGAGAGTAGAGTAAGGATTGAAGGTAAACAGAATGGTCGGAAAGGGAAATTGGCGGTGGAAGCGGAGATATTCGCGGTGGCTCCGTCGTTTGTTGTCGTGGAAGTGAAGAAAGATCATGGAGATACGCTTGAGTACAACAACTTCTGCAGTACTGCTCTTAGACCAGCTCTCAAGGACATTTTCTGGACCTCTACACCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006950 GO:0006970 GO:0006972 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009914 GO:0009926 GO:0009987 GO:0010035 GO:0010540 GO:0010817 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0036211 GO:0042221 GO:0042538 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060918 GO:0065007 GO:0065008 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

441

Amino Acids

49.36

Weight (kDa)

9.0

Isoelectric Point (pI)

36.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	24 - 278	5.6e-75	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	25 - 273	4.3e-34	Protein tyrosine and serine/threonine kinase
NAF	PF03822	313 - 373	7.3e-18	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30960
fragaria_vesca	FvH4_1g01070
malus_domestica	MD15G1045200.v1.1 MD15G1153500.v1.1
prunus_persica	Prupe.7G261300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0085831
rosa_laevigata	RLG00000013813 RLG00000015723
rosa_multiflora	Rmu_sc0001748.1_g000016
rosa_roxburghii	Rroxscaffold_2G00155000
rosa_rugosa	Rorug01G0463700
rosa_samantha	Rh2BG013500 Rh2CG014000 Rh2DG015100
rosa_wichuraiana	Rw2G001130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1046
AccII	CGCG	5 cut(s)	107, 950, 965, 1040, 1196
AciI	CCGC	6 cut(s)	318, 614, 1085, 1175, 1184, 1196
AclWI	GGATC	3 cut(s)	37, 624, 773
AcoI	YGGCCR	2 cut(s)	64, 1049
AcyI	GRCGYC	2 cut(s)	82, 1043
AfaI	GTAC	5 cut(s)	49, 116, 312, 1256, 1273
AflIII	ACRYGT	1 cut(s)	948
AgeI	ACCGGT	1 cut(s)	16
AgsI	TTSAA	6 cut(s)	523, 589, 674, 724, 835, 1142
AjnI	CCWGG	1 cut(s)	730
AjuI	GAANNNNNNNTTGG	4 cut(s)	278, 310, 1154, 1186
AluBI	AGCT	7 cut(s)	76, 259, 307, 368, 608, 772, 1289
AluI	AGCT	7 cut(s)	76, 259, 307, 368, 608, 772, 1289
Alw21I	GWGCWC	1 cut(s)	918
Alw26I	GTCTC	4 cut(s)	503, 926, 932, 1050
Alw44I	GTGCAC	1 cut(s)	914
AlwI	GGATC	3 cut(s)	37, 624, 773
AlwNI	CAGNNNCTG	1 cut(s)	872
AoxI	GGCC	2 cut(s)	64, 1049
ApaLI	GTGCAC	1 cut(s)	914
ApeKI	GCWGC	2 cut(s)	55, 872
AsiGI	ACCGGT	1 cut(s)	16
AspLEI	GCGC	1 cut(s)	574
AspS9I	GGNCC	1 cut(s)	1308
AsuHPI	GGTGA	5 cut(s)	193, 247, 332, 422, 496
AvaII	GGWCC	1 cut(s)	1308
BaeGI	GKGCMC	1 cut(s)	918
BarI	GAAGNNNNNNTAC	4 cut(s)	581, 613, 1247, 1279
BauI	CACGAG	1 cut(s)	369
BbsI	GAAGAC	3 cut(s)	77, 355, 366
Bbv12I	GWGCWC	1 cut(s)	918
BbvI	GCAGC	2 cut(s)	42, 859
BccI	CCATC	1 cut(s)	226
BceAI	ACGGC	7 cut(s)	51, 79, 383, 402, 652, 773, 976
BciT130I	CCWGG	1 cut(s)	732
BciVI	GTATCC	1 cut(s)	590
BclI	TGATCA	1 cut(s)	199
BcoDI	GTCTC	4 cut(s)	503, 926, 932, 1050
BfaI	CTAG	3 cut(s)	77, 89, 753
BfmI	CTRYAG	1 cut(s)	1267
BfuI	GTATCC	1 cut(s)	590
BglII	AGATCT	3 cut(s)	216, 288, 436
BisI	GCNGC	3 cut(s)	56, 873, 1086
BlsI	GCNGC	3 cut(s)	57, 874, 1087
BmcAI	AGTACT	1 cut(s)	1273
Bme1390I	CCNGG	1 cut(s)	732
Bme18I	GGWCC	1 cut(s)	1308
BmgT120I	GGNCC	1 cut(s)	1308
BmiI	GGNNCC	1 cut(s)	1203
BmrFI	CCNGG	1 cut(s)	732
BmsI	GCATC	1 cut(s)	739
BpiI	GAAGAC	3 cut(s)	77, 355, 366
Bpu10I	CCTNAGC	2 cut(s)	333, 609
BpuEI	CTTGAG	3 cut(s)	464, 1271, 1277
BsaAI	YACGTR	1 cut(s)	356
BsaBI	GATNNNNATC	2 cut(s)	681, 783
BsaHI	GRCGYC	2 cut(s)	82, 1043
BsaI	GGTCTC	1 cut(s)	503
BsaJI	CCNNGG	4 cut(s)	300, 418, 827, 888
BsaWI	WCCGGW	3 cut(s)	16, 137, 445
Bse118I	RCCGGY	1 cut(s)	16
Bse1I	ACTGG	1 cut(s)	866
Bse8I	GATNNNNATC	2 cut(s)	681, 783
BseBI	CCWGG	1 cut(s)	732
BseDI	CCNNGG	4 cut(s)	300, 418, 827, 888
BseGI	GGATG	3 cut(s)	237, 241, 904
BseJI	GATNNNNATC	2 cut(s)	681, 783
BseMII	CTCAG	2 cut(s)	408, 504
BseNI	ACTGG	1 cut(s)	866
BseRI	GAGGAG	3 cut(s)	729, 1016, 1031
BseSI	GKGCMC	1 cut(s)	918
BseX3I	CGGCCG	1 cut(s)	64
BseXI	GCAGC	2 cut(s)	42, 859
Bsh1236I	CGCG	5 cut(s)	107, 950, 965, 1040, 1196
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	2 cut(s)	66, 1051
BshTI	ACCGGT	1 cut(s)	16
BsiEI	CGRYCG	1 cut(s)	67
BsiHKAI	GWGCWC	1 cut(s)	918
BsiSI	CCGG	5 cut(s)	17, 138, 446, 560, 575
BsmAI	GTCTC	4 cut(s)	503, 926, 932, 1050
BsmBI	CGTCTC	3 cut(s)	926, 932, 1050
BsnI	GGCC	2 cut(s)	66, 1051
Bso31I	GGTCTC	1 cut(s)	503
Bsp1286I	GDGCHC	1 cut(s)	918
Bsp19I	CCATGG	1 cut(s)	300
Bsp68I	TCGCGA	2 cut(s)	107, 1040
BspACI	CCGC	6 cut(s)	318, 614, 1085, 1175, 1184, 1196
BspANI	GGCC	2 cut(s)	66, 1051
BspCNI	CTCAG	2 cut(s)	407, 505
BspFNI	CGCG	5 cut(s)	107, 950, 965, 1040, 1196
BspLI	GGNNCC	1 cut(s)	1203
BspMAI	CTGCAG	1 cut(s)	1271
BspPI	GGATC	3 cut(s)	37, 624, 773
BspTNI	GGTCTC	1 cut(s)	503
BsrFI	RCCGGY	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	866
BssAI	RCCGGY	1 cut(s)	16
BssECI	CCNNGG	4 cut(s)	300, 418, 827, 888
BssNI	GRCGYC	2 cut(s)	82, 1043
BssSI	CACGAG	1 cut(s)	369
BssT1I	CCWWGG	2 cut(s)	300, 827
Bst2BI	CACGAG	1 cut(s)	369
Bst2UI	CCWGG	1 cut(s)	732
Bst4CI	ACNGT	1 cut(s)	38
Bst6I	CTCTTC	3 cut(s)	888, 924, 1112
BstACI	GRCGYC	2 cut(s)	82, 1043
BstBAI	YACGTR	1 cut(s)	356
BstC8I	GCNNGC	1 cut(s)	1053
BstDEI	CTNAG	6 cut(s)	333, 394, 513, 609, 768, 1280
BstDSI	CCRYGG	3 cut(s)	300, 418, 888
BstF5I	GGATG	3 cut(s)	237, 241, 904
BstFNI	CGCG	5 cut(s)	107, 950, 965, 1040, 1196
BstHHI	GCGC	1 cut(s)	574
BstMAI	GTCTC	4 cut(s)	503, 926, 932, 1050
BstMCI	CGRYCG	1 cut(s)	67
BstMWI	GCNNNNNNNGC	3 cut(s)	338, 569, 1181
BstNI	CCWGG	1 cut(s)	732
BstSCI	CCNGG	1 cut(s)	730
BstSFI	CTRYAG	1 cut(s)	1267
BstSLI	GKGCMC	1 cut(s)	918
BstUI	CGCG	5 cut(s)	107, 950, 965, 1040, 1196
BstV1I	GCAGC	2 cut(s)	42, 859
BstV2I	GAAGAC	3 cut(s)	77, 355, 366
BstX2I	RGATCY	5 cut(s)	29, 216, 288, 436, 616
BstYI	RGATCY	5 cut(s)	29, 216, 288, 436, 616
BstZI	CGGCCG	1 cut(s)	64
BsuI	GTATCC	1 cut(s)	590
BsuRI	GGCC	2 cut(s)	66, 1051
BtgI	CCRYGG	3 cut(s)	300, 418, 888
BtgZI	GCGATG	1 cut(s)	167
BtsCI	GGATG	3 cut(s)	237, 241, 904
BtsIMutI	CAGTG	2 cut(s)	510, 873
BtuMI	TCGCGA	2 cut(s)	107, 1040
Cac8I	GCNNGC	1 cut(s)	1053
CaiI	CAGNNNCTG	1 cut(s)	872
CfoI	GCGC	1 cut(s)	574
Cfr10I	RCCGGY	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	1308
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	5 cut(s)	48, 115, 311, 1255, 1272
CspAI	ACCGGT	1 cut(s)	16
CspCI	CAANNNNNGTGG	1 cut(s)	35
CviAII	CATG	3 cut(s)	271, 301, 1238
CviQI	GTAC	5 cut(s)	48, 115, 311, 1255, 1272
DdeI	CTNAG	6 cut(s)	333, 394, 513, 609, 768, 1280
EaeI	YGGCCR	2 cut(s)	64, 1049
EagI	CGGCCG	1 cut(s)	64
Eam1104I	CTCTTC	3 cut(s)	888, 924, 1112
EarI	CTCTTC	3 cut(s)	888, 924, 1112
EciI	GGCGGA	1 cut(s)	629
EclXI	CGGCCG	1 cut(s)	64
Eco130I	CCWWGG	2 cut(s)	300, 827
Eco31I	GGTCTC	1 cut(s)	503
Eco47I	GGWCC	1 cut(s)	1308
Eco52I	CGGCCG	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	730
EcoT14I	CCWWGG	2 cut(s)	300, 827
ErhI	CCWWGG	2 cut(s)	300, 827
Esp3I	CGTCTC	3 cut(s)	926, 932, 1050
FaeI	CATG	3 cut(s)	274, 304, 1241
FalI	AAGNNNNNCTT	2 cut(s)	519, 551
FatI	CATG	3 cut(s)	270, 300, 1237
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	3 cut(s)	56, 873, 1086
FokI	GGATG	3 cut(s)	228, 244, 911
Fsp4HI	GCNGC	3 cut(s)	56, 873, 1086
FspBI	CTAG	3 cut(s)	77, 89, 753
GlaI	GCGC	1 cut(s)	573
GluI	GCNGC	3 cut(s)	56, 873, 1086
HaeIII	GGCC	2 cut(s)	66, 1051
HapII	CCGG	5 cut(s)	17, 138, 446, 560, 575
HgaI	GACGC	1 cut(s)	71
HhaI	GCGC	1 cut(s)	574
Hin1I	GRCGYC	2 cut(s)	82, 1043
Hin1II	CATG	3 cut(s)	274, 304, 1241
Hin6I	GCGC	1 cut(s)	572
HinP1I	GCGC	1 cut(s)	572
HindIII	AAGCTT	1 cut(s)	770
HinfI	GANTC	4 cut(s)	451, 784, 821, 1035
HpaII	CCGG	5 cut(s)	17, 138, 446, 560, 575
HphI	GGTGA	5 cut(s)	193, 247, 332, 422, 496
Hpy166II	GTNNAC	3 cut(s)	115, 916, 1148
Hpy188III	TCNNGA	8 cut(s)	106, 263, 674, 776, 835, 855, 1039, 1306
Hpy8I	GTNNAC	3 cut(s)	115, 916, 1148
Hpy99I	CGWCG	5 cut(s)	167, 257, 605, 1045, 1210
HpyAV	CCTTC	6 cut(s)	103, 464, 805, 919, 968, 1136
HpyCH4III	ACNGT	1 cut(s)	38
HpyCH4IV	ACGT	4 cut(s)	355, 363, 941, 1043
HpyCH4V	TGCA	2 cut(s)	916, 1269
HpyF10VI	GCNNNNNNNGC	3 cut(s)	338, 569, 1181
HpyF3I	CTNAG	6 cut(s)	333, 394, 513, 609, 768, 1280
HpySE526I	ACGT	4 cut(s)	355, 363, 941, 1043
Hsp92I	GRCGYC	2 cut(s)	82, 1043
Hsp92II	CATG	3 cut(s)	274, 304, 1241
HspAI	GCGC	1 cut(s)	572
Ksp22I	TGATCA	1 cut(s)	199
LmnI	GCTCC	4 cut(s)	8, 304, 605, 1207
Lsp1109I	GCAGC	2 cut(s)	42, 859
LweI	GCATC	1 cut(s)	739
MaeI	CTAG	3 cut(s)	77, 89, 753
MaeII	ACGT	4 cut(s)	355, 363, 941, 1043
MaeIII	GTNAC	5 cut(s)	68, 92, 125, 484, 763
MfeI	CAATTG	1 cut(s)	386
MflI	RGATCY	5 cut(s)	29, 216, 288, 436, 616
MhlI	GDGCHC	1 cut(s)	918
MluCI	AATT	2 cut(s)	386, 1169
MluI	ACGCGT	1 cut(s)	948
MmeI	TCCRAC	2 cut(s)	145, 1139
MseI	TTAA	1 cut(s)	944
MslI	CAYNNNNRTG	1 cut(s)	417
MspI	CCGG	5 cut(s)	17, 138, 446, 560, 575
MspR9I	CCNGG	1 cut(s)	732
MunI	CAATTG	1 cut(s)	386
MvaI	CCWGG	1 cut(s)	732
MvnI	CGCG	5 cut(s)	107, 950, 965, 1040, 1196
MwoI	GCNNNNNNNGC	3 cut(s)	338, 569, 1181
NcoI	CCATGG	1 cut(s)	300
NlaIII	CATG	3 cut(s)	274, 304, 1241
NlaIV	GGNNCC	1 cut(s)	1203
NmeAIII	GCCGAG	1 cut(s)	1027
NmuCI	GTSAC	3 cut(s)	92, 484, 763
NruI	TCGCGA	2 cut(s)	107, 1040
PcsI	WCGNNNNNNNCGW	3 cut(s)	69, 261, 947
PfeI	GAWTC	4 cut(s)	451, 784, 821, 1035
PinAI	ACCGGT	1 cut(s)	16
PkrI	GCNGC	3 cut(s)	57, 874, 1087
Ppu21I	YACGTR	1 cut(s)	356
Psp6I	CCWGG	1 cut(s)	730
PspGI	CCWGG	1 cut(s)	730
PspN4I	GGNNCC	1 cut(s)	1203
PspPI	GGNCC	1 cut(s)	1308
PstI	CTGCAG	1 cut(s)	1271
PstNI	CAGNNNCTG	1 cut(s)	872
PsuI	RGATCY	5 cut(s)	29, 216, 288, 436, 616
RruI	TCGCGA	2 cut(s)	107, 1040
RsaI	GTAC	5 cut(s)	49, 116, 312, 1256, 1273
RsaNI	GTAC	5 cut(s)	48, 115, 311, 1255, 1272
RseI	CAYNNNNRTG	1 cut(s)	417
SaqAI	TTAA	1 cut(s)	944
SatI	GCNGC	3 cut(s)	56, 873, 1086
Sau96I	GGNCC	1 cut(s)	1308
ScaI	AGTACT	1 cut(s)	1273
ScrFI	CCNGG	1 cut(s)	732
SduI	GDGCHC	1 cut(s)	918
SfaNI	GCATC	1 cut(s)	739
SfcI	CTRYAG	1 cut(s)	1267
SinI	GGWCC	1 cut(s)	1308
SmiMI	CAYNNNNRTG	1 cut(s)	417
SmlI	CTYRAG	3 cut(s)	479, 1250, 1292
SmoI	CTYRAG	3 cut(s)	479, 1250, 1292
Sse9I	AATT	2 cut(s)	386, 1169
SsiI	CCGC	6 cut(s)	318, 614, 1085, 1175, 1184, 1196
SspMI	CTAG	3 cut(s)	77, 89, 753
StyD4I	CCNGG	1 cut(s)	730
StyI	CCWWGG	2 cut(s)	300, 827
TaaI	ACNGT	1 cut(s)	38
TaiI	ACGT	4 cut(s)	358, 366, 944, 1046
TaqI	TCGA	3 cut(s)	255, 923, 1070
TasI	AATT	2 cut(s)	386, 1169
TatI	WGTACW	2 cut(s)	1254, 1271
TauI	GCSGC	1 cut(s)	1088
TfiI	GAWTC	4 cut(s)	451, 784, 821, 1035
Tru1I	TTAA	1 cut(s)	944
Tru9I	TTAA	1 cut(s)	944
TscAI	CASTG	2 cut(s)	517, 873
TseFI	GTSAC	3 cut(s)	92, 484, 763
TseI	GCWGC	2 cut(s)	55, 872
Tsp45I	GTSAC	3 cut(s)	92, 484, 763
TspDTI	ATGAA	4 cut(s)	170, 480, 530, 944
TspGWI	ACGGA	6 cut(s)	111, 546, 618, 905, 950, 1194
TspRI	CASTG	2 cut(s)	517, 873
VneI	GTGCAC	1 cut(s)	914
VpaK11BI	GGWCC	1 cut(s)	1308
XspI	CTAG	3 cut(s)	77, 89, 753
ZraI	GACGTC	1 cut(s)	1044
ZrmI	AGTACT	1 cut(s)	1273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.