Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0015823

Physical Location & Seq

Genomic Coordinates Forward (+)

41706932 .. 41707486

Gene Structure 555 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013813

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCGGTTTACGTGGCGCTGGAGGTGATAGGGAAGAAGGGTTACGACGAAGCCAAAGTGGATCTTTGGTCATGTGGAGTTATTCTTTATGTGCTTCTGGCTGGGTTTGTGCCATTTCAAGATGACAATTTGGTCTCCATGTATAGAAAGAAGATCTACAGAGGAGACTTCAAATGCCCACCTTGGTTTTCTTCCGAGGCCAGAAGACTCAAATCAGTGCCCAAGACGGTGAAGTCTTTATCAAAGAAAGAGCAGGAATTCGATGAGACTTCAAAGAAGAATTCAAAGCAAATGGAGACATTGAATGCGTTTCATATCATTTCGCTCTCGGAAGGGTTCGATTTGTCTCCTCTGTTCGAGGAGAAGAAGAGGGAGGAGAAGGAGGAGCTGAGATTCGCTACGACGGGGTCAGCGAGCAGGGTGATATCGAAATTGGAGGAAGTGGCAAAAGCTATGAAGTTCAAGGTGAAGAAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006950 GO:0006970 GO:0006972 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009914 GO:0009926 GO:0009987 GO:0010035 GO:0010540 GO:0010817 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0036211 GO:0042221 GO:0042538 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060918 GO:0065007 GO:0065008 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

160

Amino Acids

18.23

Weight (kDa)

9.3

Isoelectric Point (pI)

44.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	3 - 88	5.4e-10	Protein kinase domain
NAF	PF03822	99 - 158	1.2e-22	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0015823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30960
fragaria_vesca	FvH4_1g01070
malus_domestica	MD15G1045200.v1.1 MD15G1153500.v1.1
prunus_persica	Prupe.7G261300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0085831
rosa_laevigata	RLG00000013813 RLG00000015723
rosa_multiflora	Rmu_sc0001748.1_g000016
rosa_roxburghii	Rroxscaffold_2G00155000
rosa_rugosa	Rorug01G0463700
rosa_samantha	Rh2BG013500 Rh2CG014000 Rh2DG015100
rosa_wichuraiana	Rw2G001130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	131, 232
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	1 cut(s)	69
AcsI	RAATTY	2 cut(s)	257, 280
AgsI	TTSAA	6 cut(s)	119, 172, 273, 285, 304, 463
AluBI	AGCT	2 cut(s)	388, 452
AluI	AGCT	2 cut(s)	388, 452
Alw26I	GTCTC	5 cut(s)	139, 159, 260, 290, 351
AlwI	GGATC	1 cut(s)	69
AoxI	GGCC	1 cut(s)	198
ApoI	RAATTY	2 cut(s)	257, 280
AspLEI	GCGC	1 cut(s)	19
AsuHPI	GGTGA	4 cut(s)	37, 241, 433, 478
BaeGI	GKGCMC	1 cut(s)	222
BarI	GAAGNNNNNNTAC	2 cut(s)	26, 58
BbsI	GAAGAC	1 cut(s)	211
BcoDI	GTCTC	5 cut(s)	139, 159, 260, 290, 351
BfmI	CTRYAG	1 cut(s)	157
BfoI	RGCGCY	1 cut(s)	20
BglII	AGATCT	1 cut(s)	153
BpiI	GAAGAC	1 cut(s)	211
BpmI	CTGGAG	1 cut(s)	41
BsaAI	YACGTR	1 cut(s)	13
BsaI	GGTCTC	1 cut(s)	139
BsaJI	CCNNGG	2 cut(s)	182, 195
BseDI	CCNNGG	2 cut(s)	182, 195
BseMII	CTCAG	1 cut(s)	380
BseRI	GAGGAG	5 cut(s)	177, 339, 374, 389, 398
BseSI	GKGCMC	1 cut(s)	222
BseYI	CCCAGC	1 cut(s)	101
BshFI	GGCC	1 cut(s)	200
BsmAI	GTCTC	5 cut(s)	139, 159, 260, 290, 351
BsmI	GAATGC	1 cut(s)	310
BsnI	GGCC	1 cut(s)	200
Bso31I	GGTCTC	1 cut(s)	139
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	2 cut(s)	61, 153
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	200
BspCNI	CTCAG	1 cut(s)	381
BspPI	GGATC	1 cut(s)	69
BspTNI	GGTCTC	1 cut(s)	139
BssECI	CCNNGG	2 cut(s)	182, 195
BssMI	GATC	2 cut(s)	61, 153
BssT1I	CCWWGG	1 cut(s)	182
Bst4CI	ACNGT	1 cut(s)	229
Bst6I	CTCTTC	2 cut(s)	362, 467
BstBAI	YACGTR	1 cut(s)	13
BstC8I	GCNNGC	1 cut(s)	415
BstDEI	CTNAG	1 cut(s)	389
BstH2I	RGCGCY	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	2 cut(s)	64, 156
BstMAI	GTCTC	5 cut(s)	139, 159, 260, 290, 351
BstMBI	GATC	2 cut(s)	61, 153
BstSFI	CTRYAG	1 cut(s)	157
BstSLI	GKGCMC	1 cut(s)	222
BstV2I	GAAGAC	1 cut(s)	211
BstX2I	RGATCY	2 cut(s)	61, 153
BstYI	RGATCY	2 cut(s)	61, 153
BsuRI	GGCC	1 cut(s)	200
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	1 cut(s)	415
CfoI	GCGC	1 cut(s)	19
CviAII	CATG	2 cut(s)	72, 139
CviJI	RGCY	5 cut(s)	53, 101, 200, 388, 452
CviKI_1	RGCY	5 cut(s)	53, 101, 200, 388, 452
DdeI	CTNAG	1 cut(s)	389
DpnI	GATC	2 cut(s)	63, 155
DpnII	GATC	2 cut(s)	61, 153
DrdI	GACNNNNNNGTC	2 cut(s)	131, 232
DseDI	GACNNNNNNGTC	2 cut(s)	131, 232
Eam1104I	CTCTTC	2 cut(s)	362, 467
EarI	CTCTTC	2 cut(s)	362, 467
Eco130I	CCWWGG	1 cut(s)	182
Eco31I	GGTCTC	1 cut(s)	139
Eco32I	GATATC	1 cut(s)	426
EcoRI	GAATTC	2 cut(s)	257, 280
EcoRV	GATATC	1 cut(s)	426
EcoT14I	CCWWGG	1 cut(s)	182
ErhI	CCWWGG	1 cut(s)	182
FaeI	CATG	2 cut(s)	75, 142
FaiI	YATR	6 cut(s)	73, 90, 140, 144, 315, 455
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
FatI	CATG	2 cut(s)	71, 138
GlaI	GCGC	1 cut(s)	18
GsaI	CCCAGC	1 cut(s)	105
GsuI	CTGGAG	1 cut(s)	41
HaeII	RGCGCY	1 cut(s)	20
HaeIII	GGCC	1 cut(s)	200
HhaI	GCGC	1 cut(s)	19
Hin1II	CATG	2 cut(s)	75, 142
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HinfI	GANTC	2 cut(s)	207, 393
HphI	GGTGA	4 cut(s)	37, 241, 433, 478
Hpy166II	GTNNAC	1 cut(s)	10
Hpy188I	TCNGA	2 cut(s)	196, 331
Hpy188III	TCNNGA	1 cut(s)	119
Hpy8I	GTNNAC	1 cut(s)	10
Hpy99I	CGWCG	2 cut(s)	50, 406
HpyAV	CCTTC	3 cut(s)	31, 326, 373
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4IV	ACGT	1 cut(s)	12
HpyF3I	CTNAG	1 cut(s)	389
HpySE526I	ACGT	1 cut(s)	12
Hsp92II	CATG	2 cut(s)	75, 142
HspAI	GCGC	1 cut(s)	17
Kzo9I	GATC	2 cut(s)	61, 153
LmnI	GCTCC	1 cut(s)	385
LpnPI	CCDG	6 cut(s)	5, 83, 87, 214, 239, 403
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	2 cut(s)	63, 155
MboI	GATC	2 cut(s)	61, 153
MboII	GAAGA	7 cut(s)	46, 163, 183, 216, 289, 376, 379
MflI	RGATCY	2 cut(s)	61, 153
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	4 cut(s)	127, 257, 280, 431
MlyI	GAGTC	1 cut(s)	201
MnlI	CCTC	9 cut(s)	16, 155, 190, 352, 360, 363, 367, 376, 430
Mva1269I	GAATGC	1 cut(s)	310
NdeII	GATC	2 cut(s)	61, 153
NlaIII	CATG	2 cut(s)	75, 142
PcsI	WCGNNNNNNNCGW	1 cut(s)	410
PctI	GAATGC	1 cut(s)	310
PfeI	GAWTC	1 cut(s)	393
PflFI	GACNNNGTC	1 cut(s)	406
PleI	GAGTC	1 cut(s)	201
PpsI	GAGTC	1 cut(s)	201
Ppu21I	YACGTR	1 cut(s)	13
PspFI	CCCAGC	1 cut(s)	101
PsuI	RGATCY	2 cut(s)	61, 153
PsyI	GACNNNGTC	1 cut(s)	406
Sau3AI	GATC	2 cut(s)	61, 153
SchI	GAGTC	1 cut(s)	201
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	6 cut(s)	15, 27, 184, 390, 454, 468
SfcI	CTRYAG	1 cut(s)	157
Sse9I	AATT	4 cut(s)	127, 257, 280, 431
SsiI	CCGC	1 cut(s)	5
StyI	CCWWGG	1 cut(s)	182
TaaI	ACNGT	1 cut(s)	229
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	4 cut(s)	261, 339, 357, 428
TasI	AATT	4 cut(s)	127, 257, 280, 431
TfiI	GAWTC	1 cut(s)	393
TscAI	CASTG	1 cut(s)	222
TspDTI	ATGAA	2 cut(s)	302, 470
TspRI	CASTG	1 cut(s)	222
Tth111I	GACNNNGTC	1 cut(s)	406
XapI	RAATTY	2 cut(s)	257, 280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.