AT4G31200

RPR

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
15161600 .. 15164936
3337 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G31200.3

Sequence Viewer

Length: 1953 bp
ATGGATCGAAGACAGCACGATTATGCTGCTTCTTCTGGGTTACCTTATGCTCAGCAACAGCAGCAACAAGGTCCTAACTTTCAACAGCAACAACAACCACAATTCGGATTTCATCCGCAACATCCTCAGTATCCATCACCAATGAATGCTTCTGGTTTCATTCCTCCTCATCCTTCTATGCAGCAGTTCCCTTACCAGCATCCTATGCATCAGCAGCAGCAACCGCAGCATCTTCCTCATCCTCCTCACCCACAGATGTTTGGTCAACAGCAACCTCAGGCTTTCCTTCCTCACTTACCTCCACATCACCTTCCTCCGCCATTCCCTGGACCGTATGATTCTGCTCCTCCTCCTCCTCCTCCAGCTGATCCAGAGCTGCAGAAACGGATTGATAAGCTTGTTGAGTATTCGGTTAAGAACGGTCCTGAGTTTGAGGCTATGATGCGAGATAGACAGAAGGATAATCCTGATTATGCGTTTCTGTTTGGGGGTGAAGGTCATGGTTATTACCGCTATAAGCACTTTCTCTCTATGCATCCCCCTGGAGGACCCTTTGATCCTCCATTCCCGTCATCTTCAATGCCTATGATACATCATCCGCCAAATCCCATGATGAGTCCTTCAATGAACAATGTACCTGGTGCATTGGCTGTGCCACCAATCCGCCAACCTCCTTTCCCACCATTCCATGACCACCACCAGCTCCAACAGCATCTTCCGCAGCCTCATCCTTTTGCGCCCCATGCTCGTCCTGATTTTGATCAGTCAACTCATGCGTTCCGAGGTCTTTCTGGTCCACTCCCTGCTGATGTTGCAATGGAACTAAATGGTGTCTTGGGCAACCTTAATGGCACGAAAGAGTCTATTAAAAGTGCTAAGATTTGGTTCATGCAGAGATCTCCCTTTGCACCAGCTTTAGCAGAGGCACTTAGAGACAGGGTCTTTGCAATGGATGATTCTGATAGGCAGATGCACATAGTTTATCTAGCTAATGACATTCTCTTCGACAGTTTACAACGAAGGACAAACTTGCACGAGTTTGACAATGAAGCTCTTGCTTTCAGACCTATTTTGGGTTCCATGCTGGGGAGGATTTACCACTTTCCACAAAACAAGGAAGAAAACCAGTCACGTTTGGAGAAGATTTTGCAGTTTTGGGCTTCTAAGGAGGTTTTTGATCAAGACACCATCTCCTCTCTTGAGAAAGAGATGAAAAGTGGACCACCTGCAAATACCTTTTCTCATTCTCCCATTATAGCAGCACATGCCTTACAACGTCCAGGAATGCTGCAACAGCCACCAAACAGTAATGTCTCTAGCACAATGAATTTAGAGCATCTGACTAATCCGGTCGCAACCCAACAATTTATCCCAAATGTGATGCCTCCTGGTGCCTTTCCCGGTTCCATACCGCTTAACGCTTCTGTTCCACCACCAACCCAACCACCTGCTGGTGAGAAGCCGCCTCCTTATCCTCTCTTTCCTCCTGGTTTGATCCCTGGGATGGTCAGAAAGATGCAGATTGGTAGTGGTGTGCCTTACTCTCCATTGAGCCCTCTTGATATCCCAACGGTCATACCACCTTCTGATACGCCTCAATCTGAAGTACTCGAGAGAGTATCTAAGTTCTTCAAAGAGATAGGTGAGGTCAACCCAAGTGAAGGTCCCATGGGATCTGAATCACAGGACGACTATGATAATTATGAGCGGGATAGTCCACAGCGGAAAGGAGGTGCCTGCATTCCTCCACCTCCCAATCTACAGGTGGACCCCGAGACAGGAACATATGCGGATGGAAGCACCGATAAAAAGAGTGGATCTGGGAGATTGGGACTTGGGGCAACAGCTGATCCCAACGAACCAACTCAGTACGATGATGTTTATACATCTTACAGGAAACACAGAAGTACGAATTATCACACATCCATGAGTGCAAGAGCTACAACCAGATGA

Protein Analysis

650

Amino Acids

72.5

Weight (kDa)

6.23

Isoelectric Point (pI)

65.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Surp PF01805 129 - 173 1.6e-12 Surp module
CID PF04818 275 - 400 1.8e-22 CID domain
SWAP1_C PF25123 490 - 650 1.8e-90 SUPPRESSOR-OF-WHITE-APRICOT-like, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1234, 1456
Acc36I ACCTGC 2 cut(s) 1234, 1456
AccB1I GGYRCC 2 cut(s) 1391, 1733
AccB7I CCANNNNNTGG 2 cut(s) 326, 1451
AccBSI CCGCTC 1 cut(s) 1708
AclWI GGATC 7 cut(s) 12, 362, 551, 1489, 1681, 1825, 1844
AcsI RAATTY 1 cut(s) 1327
AcuI CTGAAG 1 cut(s) 1623
AfaI GTAC 4 cut(s) 636, 1608, 1871, 1909
AfiI CCNNNNNNNGG 9 cut(s) 104, 326, 545, 1073, 1086, 1451, 1504, 1661, 1778
AgsI TTSAA 4 cut(s) 83, 579, 624, 1633
AjnI CCWGG 7 cut(s) 325, 541, 637, 1279, 1387, 1486, 1498
AjuI GAANNNNNNNTTGG 4 cut(s) 133, 165, 699, 731
AluBI AGCT 9 cut(s) 365, 376, 397, 703, 914, 989, 1052, 1847, 1940
AluI AGCT 9 cut(s) 365, 376, 397, 703, 914, 989, 1052, 1847, 1940
Alw26I GTCTC 3 cut(s) 927, 1318, 1769
AlwI GGATC 7 cut(s) 12, 362, 551, 1489, 1681, 1825, 1844
Ama87I CYCGRG 2 cut(s) 1610, 1772
ApoI RAATTY 1 cut(s) 1327
ArsI GACNNNNNNTTYG 4 cut(s) 926, 958, 986, 1018
AspLEI GCGC 1 cut(s) 739
AspS9I GGNCC 8 cut(s) 71, 329, 422, 548, 794, 1220, 1664, 1768
AsuC2I CCSGG 1 cut(s) 1401
AsuHPI GGTGA 6 cut(s) 129, 239, 299, 503, 1466, 1655
AvaI CYCGRG 2 cut(s) 1610, 1772
AvaII GGWCC 8 cut(s) 71, 329, 422, 548, 794, 1220, 1664, 1768
AxyI CCTNAGG 1 cut(s) 276
BanI GGYRCC 2 cut(s) 1391, 1733
BanII GRGCYC 1 cut(s) 1556
BauI CACGAG 1 cut(s) 1034
BbsI GAAGAC 1 cut(s) 16
BccI CCATC 4 cut(s) 142, 1196, 1498, 1787
BcgI CGANNNNNNTGC 2 cut(s) 8, 42
BciT130I CCWGG 7 cut(s) 327, 543, 639, 1281, 1389, 1488, 1500
BciVI GTATCC 1 cut(s) 141
BclI TGATCA 2 cut(s) 760, 1177
BcnI CCSGG 1 cut(s) 1401
BcoDI GTCTC 3 cut(s) 927, 1318, 1769
BfaI CTAG 2 cut(s) 986, 1317
BfmI CTRYAG 2 cut(s) 377, 1760
BfuAI ACCTGC 2 cut(s) 1234, 1456
BfuI GTATCC 1 cut(s) 141
BglII AGATCT 1 cut(s) 896
BlpI GCTNAGC 1 cut(s) 51
BmcAI AGTACT 1 cut(s) 1608
Bme1390I CCNGG 8 cut(s) 327, 543, 639, 1281, 1389, 1401, 1488, 1500
Bme18I GGWCC 8 cut(s) 71, 329, 422, 548, 794, 1220, 1664, 1768
BmeT110I CYCGRG 2 cut(s) 1610, 1772
BmgT120I GGNCC 8 cut(s) 71, 329, 422, 548, 794, 1220, 1664, 1768
BmiI GGNNCC 7 cut(s) 550, 1078, 1393, 1405, 1666, 1735, 1770
BmrFI CCNGG 8 cut(s) 327, 543, 639, 1281, 1389, 1401, 1488, 1500
BpiI GAAGAC 1 cut(s) 16
BpmI CTGGAG 2 cut(s) 345, 564
Bpu1102I GCTNAGC 1 cut(s) 51
BpuEI CTTGAG 1 cut(s) 1220
BpuMI CCSGG 1 cut(s) 1401
BsaBI GATNNNNATC 2 cut(s) 759, 1678
BsaJI CCNNGG 6 cut(s) 325, 541, 781, 1498, 1499, 1668
BsaWI WCCGGW 1 cut(s) 1348
BsaXI ACNNNNNCTCC 2 cut(s) 1175, 1205
Bsc4I CCNNNNNNNGG 9 cut(s) 104, 326, 545, 1073, 1086, 1451, 1504, 1661, 1778
Bse1I ACTGG 1 cut(s) 1126
Bse21I CCTNAGG 1 cut(s) 276
Bse3DI GCAATG 2 cut(s) 822, 954
Bse8I GATNNNNATC 2 cut(s) 759, 1678
BseBI CCWGG 7 cut(s) 327, 543, 639, 1281, 1389, 1488, 1500
BseDI CCNNGG 6 cut(s) 325, 541, 781, 1498, 1499, 1668
BseJI GATNNNNATC 2 cut(s) 759, 1678
BseLI CCNNNNNNNGG 9 cut(s) 104, 326, 545, 1073, 1086, 1451, 1504, 1661, 1778
BseMI GCAATG 2 cut(s) 822, 954
BseMII CTCAG 5 cut(s) 65, 140, 290, 417, 1880
BseNI ACTGG 1 cut(s) 1126
BseRI GAGGAG 8 cut(s) 156, 234, 336, 339, 342, 345, 348, 1183
BseYI CCCAGC 1 cut(s) 1084
Bsh1285I CGRYCG 1 cut(s) 1353
BshNI GGYRCC 2 cut(s) 1391, 1733
BsiEI CGRYCG 1 cut(s) 1353
BsiHKCI CYCGRG 2 cut(s) 1610, 1772
BsiSI CCGG 2 cut(s) 1349, 1401
BslFI GGGAC 2 cut(s) 1650, 1845
BslI CCNNNNNNNGG 9 cut(s) 104, 326, 545, 1073, 1086, 1451, 1504, 1661, 1778
BsmAI GTCTC 3 cut(s) 927, 1318, 1769
BsmFI GGGAC 2 cut(s) 1650, 1845
BsmI GAATGC 3 cut(s) 151, 1290, 1740
BsoBI CYCGRG 2 cut(s) 1610, 1772
Bsp1286I GDGCHC 1 cut(s) 1556
Bsp1720I GCTNAGC 1 cut(s) 51
Bsp19I CCATGG 1 cut(s) 1668
BspCNI CTCAG 5 cut(s) 64, 139, 289, 418, 1879
BspLI GGNNCC 7 cut(s) 550, 1078, 1393, 1405, 1666, 1735, 1770
BspMAI CTGCAG 1 cut(s) 381
BspMI ACCTGC 2 cut(s) 1234, 1456
BspPI GGATC 7 cut(s) 12, 362, 551, 1489, 1681, 1825, 1844
BspT107I GGYRCC 2 cut(s) 1391, 1733
BsrBI CCGCTC 1 cut(s) 1708
BsrDI GCAATG 2 cut(s) 822, 954
BsrI ACTGG 1 cut(s) 1126
BssECI CCNNGG 6 cut(s) 325, 541, 781, 1498, 1499, 1668
BssSI CACGAG 1 cut(s) 1034
BssT1I CCWWGG 1 cut(s) 1668
Bst2BI CACGAG 1 cut(s) 1034
Bst2UI CCWGG 7 cut(s) 327, 543, 639, 1281, 1389, 1488, 1500
Bst4CI ACNGT 5 cut(s) 333, 422, 1010, 1307, 1573
Bst6I CTCTTC 1 cut(s) 1007
BstAPI GCANNNNNTGC 2 cut(s) 205, 1265
BstC8I GCNNGC 1 cut(s) 1738
BstDEI CTNAG 9 cut(s) 51, 126, 276, 426, 876, 929, 1164, 1623, 1866
BstDSI CCRYGG 1 cut(s) 1668
BstEII GGTNACC 1 cut(s) 39
BstHHI GCGC 1 cut(s) 739
BstMAI GTCTC 3 cut(s) 927, 1318, 1769
BstMCI CGRYCG 1 cut(s) 1353
BstNI CCWGG 7 cut(s) 327, 543, 639, 1281, 1389, 1488, 1500
BstNSI RCATGY 1 cut(s) 1268
BstPI GGTNACC 1 cut(s) 39
BstSCI CCNGG 8 cut(s) 325, 541, 637, 1279, 1387, 1399, 1486, 1498
BstSFI CTRYAG 2 cut(s) 377, 1760
BstV2I GAAGAC 1 cut(s) 16
BstX2I RGATCY 3 cut(s) 896, 1673, 1817
BstYI RGATCY 3 cut(s) 896, 1673, 1817
Bsu36I CCTNAGG 1 cut(s) 276
BsuI GTATCC 1 cut(s) 141
BtgI CCRYGG 1 cut(s) 1668
BveI ACCTGC 2 cut(s) 1234, 1456
Cac8I GCNNGC 1 cut(s) 1738
CfoI GCGC 1 cut(s) 739
Cfr13I GGNCC 8 cut(s) 71, 329, 422, 548, 794, 1220, 1664, 1768
CsiI ACCWGGT 1 cut(s) 637
Csp6I GTAC 4 cut(s) 635, 1607, 1870, 1908
CviQI GTAC 4 cut(s) 635, 1607, 1870, 1908
DdeI CTNAG 9 cut(s) 51, 126, 276, 426, 876, 929, 1164, 1623, 1866
Eam1104I CTCTTC 1 cut(s) 1007
EarI CTCTTC 1 cut(s) 1007
EciI GGCGGA 3 cut(s) 306, 588, 653
Eco130I CCWWGG 1 cut(s) 1668
Eco24I GRGCYC 1 cut(s) 1556
Eco32I GATATC 1 cut(s) 1564
Eco47I GGWCC 8 cut(s) 71, 329, 422, 548, 794, 1220, 1664, 1768
Eco57I CTGAAG 1 cut(s) 1623
Eco81I CCTNAGG 1 cut(s) 276
Eco88I CYCGRG 2 cut(s) 1610, 1772
Eco91I GGTNACC 1 cut(s) 39
EcoO109I RGGNCCY 3 cut(s) 71, 548, 1664
EcoO65I GGTNACC 1 cut(s) 39
EcoRII CCWGG 7 cut(s) 325, 541, 637, 1279, 1387, 1486, 1498
EcoRV GATATC 1 cut(s) 1564
EcoT14I CCWWGG 1 cut(s) 1668
EcoT22I ATGCAT 2 cut(s) 210, 537
EcoT38I GRGCYC 1 cut(s) 1556
ErhI CCWWGG 1 cut(s) 1668
FaqI GGGAC 2 cut(s) 1650, 1845
FauI CCCGC 1 cut(s) 1701
FauNDI CATATG 1 cut(s) 1786
FbaI TGATCA 2 cut(s) 760, 1177
FriOI GRGCYC 1 cut(s) 1556
FspBI CTAG 2 cut(s) 986, 1317
GlaI GCGC 1 cut(s) 738
GsaI CCCAGC 1 cut(s) 1088
GsuI CTGGAG 2 cut(s) 345, 564
HapII CCGG 2 cut(s) 1349, 1401
HhaI GCGC 1 cut(s) 739
Hin6I GCGC 1 cut(s) 737
HinP1I GCGC 1 cut(s) 737
HincII GTYRAC 3 cut(s) 266, 768, 1651
HindII GTYRAC 3 cut(s) 266, 768, 1651
HindIII AAGCTT 1 cut(s) 395
HinfI GANTC 5 cut(s) 338, 616, 860, 956, 1679
HpaII CCGG 2 cut(s) 1349, 1401
HphI GGTGA 6 cut(s) 129, 239, 299, 503, 1466, 1655
Hpy166II GTNNAC 8 cut(s) 266, 768, 797, 1013, 1220, 1651, 1718, 1768
Hpy188I TCNGA 9 cut(s) 107, 782, 961, 1064, 1341, 1511, 1588, 1603, 1678
Hpy188III TCNNGA 8 cut(s) 371, 425, 467, 752, 1181, 1199, 1559, 1612
Hpy8I GTNNAC 8 cut(s) 266, 768, 797, 1013, 1220, 1651, 1718, 1768
HpyAV CCTTC 9 cut(s) 183, 296, 320, 451, 488, 630, 1014, 1593, 1655
HpyCH4III ACNGT 5 cut(s) 333, 422, 1010, 1307, 1573
HpyCH4IV ACGT 2 cut(s) 1132, 1276
HpyF3I CTNAG 9 cut(s) 51, 126, 276, 426, 876, 929, 1164, 1623, 1866
HpySE526I ACGT 2 cut(s) 1132, 1276
HspAI GCGC 1 cut(s) 737
Ksp22I TGATCA 2 cut(s) 760, 1177
LmnI GCTCC 2 cut(s) 349, 708
MabI ACCWGGT 1 cut(s) 637
MaeI CTAG 2 cut(s) 986, 1317
MaeII ACGT 2 cut(s) 1132, 1276
MaeIII GTNAC 2 cut(s) 39, 1128
MbiI CCGCTC 1 cut(s) 1708
MboII GAAGA 9 cut(s) 21, 24, 224, 567, 707, 994, 1130, 1153, 1621
MflI RGATCY 3 cut(s) 896, 1673, 1817
MhlI GDGCHC 1 cut(s) 1556
MluCI AATT 5 cut(s) 101, 1327, 1364, 1699, 1912
MlyI GAGTC 2 cut(s) 625, 869
MmeI TCCRAC 1 cut(s) 730
Mph1103I ATGCAT 2 cut(s) 210, 537
MseI TTAA 4 cut(s) 414, 846, 867, 1416
MslI CAYNNNNRTG 2 cut(s) 21, 1925
MspA1I CMGCKG 3 cut(s) 365, 1723, 1847
MspI CCGG 2 cut(s) 1349, 1401
MspR9I CCNGG 8 cut(s) 327, 543, 639, 1281, 1389, 1401, 1488, 1500
Mva1269I GAATGC 3 cut(s) 151, 1290, 1740
MvaI CCWGG 7 cut(s) 327, 543, 639, 1281, 1389, 1488, 1500
NciI CCSGG 1 cut(s) 1401
NcoI CCATGG 1 cut(s) 1668
NdeI CATATG 1 cut(s) 1786
NlaIV GGNNCC 7 cut(s) 550, 1078, 1393, 1405, 1666, 1735, 1770
NmuCI GTSAC 1 cut(s) 1128
NsiI ATGCAT 2 cut(s) 210, 537
NspI RCATGY 1 cut(s) 1268
PaeR7I CTCGAG 1 cut(s) 1610
PaqCI CACCTGC 2 cut(s) 1234, 1456
PasI CCCWGGG 1 cut(s) 1499
PctI GAATGC 3 cut(s) 151, 1290, 1740
PfeI GAWTC 3 cut(s) 338, 956, 1679
PflFI GACNNNGTC 1 cut(s) 938
PflMI CCANNNNNTGG 2 cut(s) 326, 1451
PfoI TCCNGGA 1 cut(s) 1279
PleI GAGTC 2 cut(s) 624, 868
PpsI GAGTC 2 cut(s) 624, 868
PpuMI RGGWCCY 3 cut(s) 71, 548, 1664
Psp5II RGGWCCY 3 cut(s) 71, 548, 1664
Psp6I CCWGG 7 cut(s) 325, 541, 637, 1279, 1387, 1486, 1498
PspEI GGTNACC 1 cut(s) 39
PspFI CCCAGC 1 cut(s) 1084
PspGI CCWGG 7 cut(s) 325, 541, 637, 1279, 1387, 1486, 1498
PspN4I GGNNCC 7 cut(s) 550, 1078, 1393, 1405, 1666, 1735, 1770
PspPI GGNCC 8 cut(s) 71, 329, 422, 548, 794, 1220, 1664, 1768
PspPPI RGGWCCY 3 cut(s) 71, 548, 1664
PstI CTGCAG 1 cut(s) 381
PsuI RGATCY 3 cut(s) 896, 1673, 1817
PsyI GACNNNGTC 1 cut(s) 938
PvuII CAGCTG 2 cut(s) 365, 1847
RsaI GTAC 4 cut(s) 636, 1608, 1871, 1909
RsaNI GTAC 4 cut(s) 635, 1607, 1870, 1908
RseI CAYNNNNRTG 2 cut(s) 21, 1925
SaqAI TTAA 4 cut(s) 414, 846, 867, 1416
Sau96I GGNCC 8 cut(s) 71, 329, 422, 548, 794, 1220, 1664, 1768
ScaI AGTACT 1 cut(s) 1608
SchI GAGTC 2 cut(s) 625, 869
ScrFI CCNGG 8 cut(s) 327, 543, 639, 1281, 1389, 1401, 1488, 1500
SduI GDGCHC 1 cut(s) 1556
SexAI ACCWGGT 1 cut(s) 637
SfcI CTRYAG 2 cut(s) 377, 1760
Sfr274I CTCGAG 1 cut(s) 1610
SinI GGWCC 8 cut(s) 71, 329, 422, 548, 794, 1220, 1664, 1768
SlaI CTCGAG 1 cut(s) 1610
SmiMI CAYNNNNRTG 2 cut(s) 21, 1925
SmlI CTYRAG 2 cut(s) 1199, 1610
SmoI CTYRAG 2 cut(s) 1199, 1610
Sse9I AATT 5 cut(s) 101, 1327, 1364, 1699, 1912
SspMI CTAG 2 cut(s) 986, 1317
StyD4I CCNGG 8 cut(s) 325, 541, 637, 1279, 1387, 1399, 1486, 1498
StyI CCWWGG 1 cut(s) 1668
TaaI ACNGT 5 cut(s) 333, 422, 1010, 1307, 1573
TaiI ACGT 2 cut(s) 1135, 1279
TaqI TCGA 3 cut(s) 7, 1005, 1611
TasI AATT 5 cut(s) 101, 1327, 1364, 1699, 1912
TatI WGTACW 1 cut(s) 1606
TauI GCSGC 1 cut(s) 1465
TfiI GAWTC 3 cut(s) 338, 956, 1679
Tru1I TTAA 4 cut(s) 414, 846, 867, 1416
Tru9I TTAA 4 cut(s) 414, 846, 867, 1416
TseFI GTSAC 1 cut(s) 1128
Tsp45I GTSAC 1 cut(s) 1128
TspDTI ATGAA 8 cut(s) 101, 148, 158, 641, 877, 1062, 1226, 1340
TspGWI ACGGA 1 cut(s) 400
Tth111I GACNNNGTC 1 cut(s) 938
Van91I CCANNNNNTGG 2 cut(s) 326, 1451
VpaK11BI GGWCC 8 cut(s) 71, 329, 422, 548, 794, 1220, 1664, 1768
XapI RAATTY 1 cut(s) 1327
XceI RCATGY 1 cut(s) 1268
XcmI CCANNNNNNNNNTGG 2 cut(s) 1448, 1762
XhoI CTCGAG 1 cut(s) 1610
XspI CTAG 2 cut(s) 986, 1317
ZrmI AGTACT 1 cut(s) 1608
Zsp2I ATGCAT 2 cut(s) 210, 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.