Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8150504.1

Orthogroup ID

OG0009244

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 650

Gene Structure 649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8150504.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 649 bp

gatcaagagcatcttgataaacatgtagctcctggtcaagtggtgccactttccgtgccatcccagcaatttcttccaaattcagtccctcctgctgcctttgctgggcccctccccataccatcttctgttcaaccagcaatcccacaacccctgccacatttattgccaggtcaagctgctaccagtggcgagaagttgccaccatatcctttgttcccacctggtcttattcctgagatggtcagaaagatgcagattggcagtggggtgccatactcaccgatgagtcctctggacattccaaccatcataccttcatccactgtacctcagtccgaaattcttgagagagtgtcaaagttcttcaaagagattggagaagttaatccttctgaaggacctattcatggttctgatggtagagacgatgatgagtacgaaagtagtactccggcacgcaagggaggagcttgcatccctccacccccaaacctgcaggtagacccagagacgggggcttatgcagatggaagtgttgatcgaaagagtggctcggggagattgggactcggggccacagctaatccaaatgaggtgagccagtacgacgatgtctattcttcttaccggaaacagagaagcacca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0007204 GO:0008150 GO:0008285 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0012505 GO:0016020 GO:0016528 GO:0016529 GO:0019725 GO:0023051 GO:0023056 GO:0030001 GO:0030003 GO:0031090 GO:0031984 GO:0032879 GO:0033017 GO:0034220 GO:0042127 GO:0042175 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044325 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050848 GO:0050850 GO:0051179 GO:0051209 GO:0051234 GO:0051282 GO:0051283 GO:0051480 GO:0051641 GO:0051649 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055085 GO:0060401 GO:0060402 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0070884 GO:0070886 GO:0072503 GO:0072507 GO:0072511 GO:0097553 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098827 GO:0106056 GO:0106058 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CTD_bind Surp

Protein Analysis

216

Amino Acids

22.89

Weight (kDa)

4.94

Isoelectric Point (pI)

58.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31200 AT4G31200 AT4G31200
fragaria_vesca	FvH4_2g36600
malus_domestica	MD08G1126000.v1.1 MD15G1105800.v1.1
prunus_persica	Prupe.1G457600_v2.0.a1 Prupe.1G457600_v2.0.a1 Prupe.1G457600_v2.0.a1
pyrus_communis	pycom08g10510 pycom15g09600 pycom15g09640
rosa_chinensis	RchiOBHm_Chr6g0305221
rosa_laevigata	RLG00000010907
rosa_multiflora	Rmu_co8150504.1_g000001
rosa_roxburghii	Rroxscaffold_7G00163030
rosa_rugosa	Rorug06G0338700
rosa_samantha	Rh6AG450400 Rh6BG451000 Rh6CG464300 Rh6DG451000
rosa_wichuraiana	Rw6G039250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	490, 504
AccB1I	GGYRCC	2 cut(s)	43, 271
AccI	GTMKAC	1 cut(s)	504
AcsI	RAATTY	2 cut(s)	79, 342
AcuI	CTGAAG	1 cut(s)	417
AfaI	GTAC	4 cut(s)	330, 440, 451, 608
AfiI	CCNNNNNNNGG	5 cut(s)	105, 398, 410, 514, 515
AflIII	ACRYGT	1 cut(s)	22
AgsI	TTSAA	2 cut(s)	134, 370
AjnI	CCWGG	3 cut(s)	31, 169, 223
AluBI	AGCT	4 cut(s)	29, 179, 473, 584
AluI	AGCT	4 cut(s)	29, 179, 473, 584
Alw26I	GTCTC	2 cut(s)	420, 506
Ama87I	CYCGRG	2 cut(s)	556, 572
AoxI	GGCC	2 cut(s)	107, 576
ApaI	GGGCCC	1 cut(s)	111
ApeKI	GCWGC	2 cut(s)	95, 179
ApoI	RAATTY	2 cut(s)	79, 342
AspS9I	GGNCC	4 cut(s)	107, 108, 401, 576
AsuHPI	GGTGA	2 cut(s)	273, 610
AvaI	CYCGRG	2 cut(s)	556, 572
AvaII	GGWCC	1 cut(s)	401
BaeGI	GKGCMC	1 cut(s)	111
BanI	GGYRCC	2 cut(s)	43, 271
BanII	GRGCYC	1 cut(s)	111
BbvI	GCAGC	2 cut(s)	82, 166
BccI	CCATC	6 cut(s)	67, 130, 235, 317, 413, 524
BciT130I	CCWGG	3 cut(s)	33, 171, 225
BcoDI	GTCTC	2 cut(s)	420, 506
BfmI	CTRYAG	1 cut(s)	497
BfuAI	ACCTGC	2 cut(s)	490, 504
BisI	GCNGC	2 cut(s)	96, 180
BlsI	GCNGC	2 cut(s)	97, 181
BmcAI	AGTACT	1 cut(s)	451
Bme1390I	CCNGG	3 cut(s)	33, 171, 225
Bme18I	GGWCC	1 cut(s)	401
BmeT110I	CYCGRG	2 cut(s)	556, 572
BmgT120I	GGNCC	4 cut(s)	107, 108, 401, 576
BmiI	GGNNCC	5 cut(s)	45, 109, 110, 273, 577
BmrFI	CCNGG	3 cut(s)	33, 171, 225
BmsI	GCATC	3 cut(s)	19, 243, 486
BpuEI	CTTGAG	1 cut(s)	368
BsaWI	WCCGGW	1 cut(s)	630
Bsc4I	CCNNNNNNNGG	5 cut(s)	105, 398, 410, 514, 515
Bse1I	ACTGG	2 cut(s)	186, 604
BseBI	CCWGG	3 cut(s)	33, 171, 225
BseGI	GGATG	3 cut(s)	59, 320, 477
BseLI	CCNNNNNNNGG	5 cut(s)	105, 398, 410, 514, 515
BseMII	CTCAG	2 cut(s)	228, 347
BseNI	ACTGG	2 cut(s)	186, 604
BseRI	GAGGAG	1 cut(s)	483
BseSI	GKGCMC	1 cut(s)	111
BseXI	GCAGC	2 cut(s)	82, 166
BseYI	CCCAGC	2 cut(s)	63, 104
BshFI	GGCC	2 cut(s)	109, 578
BshNI	GGYRCC	2 cut(s)	43, 271
BsiHKCI	CYCGRG	2 cut(s)	556, 572
BsiSI	CCGG	2 cut(s)	455, 631
BslFI	GGGAC	2 cut(s)	71, 582
BslI	CCNNNNNNNGG	5 cut(s)	105, 398, 410, 514, 515
BsmAI	GTCTC	2 cut(s)	420, 506
BsmBI	CGTCTC	2 cut(s)	420, 506
BsmFI	GGGAC	2 cut(s)	71, 582
BsnI	GGCC	2 cut(s)	109, 578
BsoBI	CYCGRG	2 cut(s)	556, 572
Bsp120I	GGGCCC	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	1 cut(s)	541
BspANI	GGCC	2 cut(s)	109, 578
BspCNI	CTCAG	2 cut(s)	229, 346
BspLI	GGNNCC	5 cut(s)	45, 109, 110, 273, 577
BspMAI	CTGCAG	1 cut(s)	501
BspMI	ACCTGC	2 cut(s)	490, 504
BspT107I	GGYRCC	2 cut(s)	43, 271
BsrI	ACTGG	2 cut(s)	186, 604
BssMI	GATC	1 cut(s)	541
Bst2UI	CCWGG	3 cut(s)	33, 171, 225
Bst4CI	ACNGT	1 cut(s)	328
BstC8I	GCNNGC	2 cut(s)	460, 475
BstDEI	CTNAG	2 cut(s)	237, 333
BstENI	CCTNNNNNAGG	1 cut(s)	396
BstF5I	GGATG	3 cut(s)	59, 320, 477
BstKTI	GATC	2 cut(s)	4, 544
BstMAI	GTCTC	2 cut(s)	420, 506
BstMBI	GATC	1 cut(s)	541
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 101
BstNI	CCWGG	3 cut(s)	33, 171, 225
BstNSI	RCATGY	1 cut(s)	26
BstSCI	CCNGG	3 cut(s)	31, 169, 223
BstSFI	CTRYAG	1 cut(s)	497
BstSLI	GKGCMC	1 cut(s)	111
BstV1I	GCAGC	2 cut(s)	82, 166
BsuRI	GGCC	2 cut(s)	109, 578
BtsCI	GGATG	3 cut(s)	59, 320, 477
BtsI	GCAGTG	1 cut(s)	271
BtsIMutI	CAGTG	3 cut(s)	193, 271, 324
BveI	ACCTGC	2 cut(s)	490, 504
Cac8I	GCNNGC	2 cut(s)	460, 475
Cfr13I	GGNCC	4 cut(s)	107, 108, 401, 576
CsiI	ACCWGGT	1 cut(s)	223
Csp6I	GTAC	4 cut(s)	329, 439, 450, 607
CspCI	CAANNNNNGTGG	2 cut(s)	147, 182
CviAII	CATG	2 cut(s)	23, 410
CviJI	RGCY	9 cut(s)	29, 109, 179, 473, 521, 555, 578, 584, 603
CviKI_1	RGCY	9 cut(s)	29, 109, 179, 473, 521, 555, 578, 584, 603
CviQI	GTAC	4 cut(s)	329, 439, 450, 607
DdeI	CTNAG	2 cut(s)	237, 333
DpnI	GATC	2 cut(s)	3, 543
DpnII	GATC	1 cut(s)	541
Eco24I	GRGCYC	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	401
Eco57I	CTGAAG	1 cut(s)	417
Eco88I	CYCGRG	2 cut(s)	556, 572
EcoNI	CCTNNNNNAGG	1 cut(s)	396
EcoO109I	RGGNCCY	2 cut(s)	108, 401
EcoRII	CCWGG	3 cut(s)	31, 169, 223
EcoT38I	GRGCYC	1 cut(s)	111
Esp3I	CGTCTC	2 cut(s)	420, 506
FaeI	CATG	2 cut(s)	26, 413
FaiI	YATR	7 cut(s)	24, 119, 208, 277, 314, 411, 525
FalI	AAGNNNNNCTT	1 cut(s)	29
FaqI	GGGAC	2 cut(s)	71, 582
FatI	CATG	2 cut(s)	22, 409
FblI	GTMKAC	1 cut(s)	504
Fnu4HI	GCNGC	2 cut(s)	96, 180
FokI	GGATG	3 cut(s)	46, 307, 464
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	2 cut(s)	96, 180
GluI	GCNGC	2 cut(s)	96, 180
GsaI	CCCAGC	2 cut(s)	67, 108
HaeIII	GGCC	2 cut(s)	109, 578
HapII	CCGG	2 cut(s)	455, 631
Hin1II	CATG	2 cut(s)	26, 413
HinfI	GANTC	2 cut(s)	289, 570
HpaII	CCGG	2 cut(s)	455, 631
HphI	GGTGA	2 cut(s)	273, 610
Hpy166II	GTNNAC	1 cut(s)	505
Hpy188I	TCNGA	4 cut(s)	248, 340, 397, 418
Hpy188III	TCNNGA	5 cut(s)	5, 14, 236, 296, 347
Hpy8I	GTNNAC	1 cut(s)	505
Hpy99I	CGWCG	1 cut(s)	614
HpyAV	CCTTC	3 cut(s)	327, 392, 402
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4V	TGCA	4 cut(s)	256, 477, 499, 527
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 101
HpyF3I	CTNAG	2 cut(s)	237, 333
Hsp92II	CATG	2 cut(s)	26, 413
Kzo9I	GATC	1 cut(s)	541
LmnI	GCTCC	2 cut(s)	34, 470
Lsp1109I	GCAGC	2 cut(s)	82, 166
LweI	GCATC	3 cut(s)	19, 243, 486
MabI	ACCWGGT	1 cut(s)	223
MalI	GATC	2 cut(s)	3, 543
MboI	GATC	1 cut(s)	541
MboII	GAAGA	4 cut(s)	65, 117, 358, 615
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	3 cut(s)	68, 79, 342
MlyI	GAGTC	2 cut(s)	298, 564
MmeI	TCCRAC	1 cut(s)	329
MnlI	CCTC	7 cut(s)	99, 122, 303, 342, 461, 492, 589
MseI	TTAA	1 cut(s)	387
MspI	CCGG	2 cut(s)	455, 631
MspR9I	CCNGG	3 cut(s)	33, 171, 225
MvaI	CCWGG	3 cut(s)	33, 171, 225
MwoI	GCNNNNNNNGC	2 cut(s)	64, 101
NdeII	GATC	1 cut(s)	541
NlaIII	CATG	2 cut(s)	26, 413
NlaIV	GGNNCC	5 cut(s)	45, 109, 110, 273, 577
NspI	RCATGY	1 cut(s)	26
PciI	ACATGT	1 cut(s)	22
PflFI	GACNNNGTC	1 cut(s)	614
PkrI	GCNGC	2 cut(s)	97, 181
PleI	GAGTC	2 cut(s)	297, 564
PpsI	GAGTC	2 cut(s)	297, 564
PpuMI	RGGWCCY	1 cut(s)	401
PscI	ACATGT	1 cut(s)	22
Psp5II	RGGWCCY	1 cut(s)	401
Psp6I	CCWGG	3 cut(s)	31, 169, 223
PspFI	CCCAGC	2 cut(s)	63, 104
PspGI	CCWGG	3 cut(s)	31, 169, 223
PspN4I	GGNNCC	5 cut(s)	45, 109, 110, 273, 577
PspOMI	GGGCCC	1 cut(s)	107
PspPI	GGNCC	4 cut(s)	107, 108, 401, 576
PspPPI	RGGWCCY	1 cut(s)	401
PstI	CTGCAG	1 cut(s)	501
PsyI	GACNNNGTC	1 cut(s)	614
RsaI	GTAC	4 cut(s)	330, 440, 451, 608
RsaNI	GTAC	4 cut(s)	329, 439, 450, 607
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	2 cut(s)	96, 180
Sau3AI	GATC	1 cut(s)	541
Sau96I	GGNCC	4 cut(s)	107, 108, 401, 576
SbfI	CCTGCAGG	1 cut(s)	501
ScaI	AGTACT	1 cut(s)	451
SchI	GAGTC	2 cut(s)	298, 564
ScrFI	CCNGG	3 cut(s)	33, 171, 225
SdaI	CCTGCAGG	1 cut(s)	501
SduI	GDGCHC	1 cut(s)	111
SexAI	ACCWGGT	1 cut(s)	223
SfaNI	GCATC	3 cut(s)	19, 243, 486
SfcI	CTRYAG	1 cut(s)	497
SinI	GGWCC	1 cut(s)	401
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
Sse8387I	CCTGCAGG	1 cut(s)	501
Sse9I	AATT	3 cut(s)	68, 79, 342
StyD4I	CCNGG	3 cut(s)	31, 169, 223
TaaI	ACNGT	1 cut(s)	328
TaqI	TCGA	1 cut(s)	544
TasI	AATT	3 cut(s)	68, 79, 342
TatI	WGTACW	1 cut(s)	449
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	3 cut(s)	193, 271, 331
TseI	GCWGC	2 cut(s)	95, 179
TspDTI	ATGAA	2 cut(s)	309, 398
TspGWI	ACGGA	1 cut(s)	43
TspRI	CASTG	3 cut(s)	193, 271, 331
Tth111I	GACNNNGTC	1 cut(s)	614
VpaK11BI	GGWCC	1 cut(s)	401
XagI	CCTNNNNNAGG	1 cut(s)	396
XapI	RAATTY	2 cut(s)	79, 342
XceI	RCATGY	1 cut(s)	26
XmiI	GTMKAC	1 cut(s)	504
ZrmI	AGTACT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.