Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0009244

Physical Location & Seq

Genomic Coordinates Forward (+)

5230514 .. 5233535

Gene Structure 3022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010907

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1965 bp

ATGGATCGGCAGGCCCACGACTACGCCGCCTACGCCCAACAACAACAGCAGCAGCAGCAGCGACAACCACCGCAGCCACAACAACCGCCGCCGCAGCAACAATTCGGGTACCCACCCCAGGCCCAACAGTTTCACGGCCCTCCTTTCGGACCCCCACACCCGCCCCTCCAGCAATTCCCCTTCCACCCCCACTTACAGCAGCAACCGCCGCCCCAGGTTCTCTCCCACGCGCCGCCGCCTCACCCTCACCACCTCCCCCCTCCGCCTGCCTTCGCCCCCCACCTCCCCCCTCCCCTCGTCCCCCCGCCTTTCCACGCCGGCCCTCCTCCTCCGGCCGCCGGTCCTCCGTCCGACCCGGAGCTCCACAAACGGATCGACAAGCTCGTCGAGTACTCCGCCAAGAACGGACCCGACTTCGAAGCCATGATTCGCGAGAAGCAGCAGGATAATCCCGACTACGCTTTCCTCTTCGGCGGCGAAGGCCACGGCTATTACCGTTACAAGCTCTACGCCTCCACTCGGGTCGGGTCGTTCAACCCGAATCCTCAATTTGCTCCCCACATGCTTCGTCCTCCGCCGAATCCAATGATGAATGGGCCGCCGAACCCGATGATGGGCGGCCCGCAGTCGTATTTCTACGACCAGCAGCGGCATAATCAGCAGCCTTTCGGAGTTTATGGGAGGTCCGATTATGACCAGGCGGCGCCGGCTCAACCCTTTAAAGGGCTTTCGGGGCCGCTGCCTCCTGATGTTGCAATGGACCTGAGCAATGTGCTTATGACGCTGAATGGGACCAAAGAGTCGATTAAAGGAGCTAAGTTTTGGTTTATGCAGAGGTCTATTTTCGCTCCGGCTCTGGCTGAGGCTCTTAGAGAGAGGGTTTTTGGACTTGATGATCCTGAGAGGCAGCTACATGTGATATTTCTTGCCAATGACATTTTGTTCGACAGCTCACATCGTCGAACTGGTGAAGGCCTTGATAACGAATCACTTGCACTCAAACCTATCTTAGGTTCCATGCTTGCAAGGATTTATCACAACCCTCAAATAACGGAAGACAATCAGATGAAGTTGCAGCAAATTTTGCAGTTATGGGTTTCCAATAACATTTATGATCAGGATACAATTGATGCATTTAGGAATGAGATGATTGGTGGACCATCAAGTAATTCTTTTCCAGGTCTTCCAAAAGACTTAGCTACTACTTCAACAGATTCAGCAGCAGGATTGCCACAATGGCAGCCTGATAGGCAAGGTTCTGTTTCGAGTTCACACGATCAAGAGCATCTTGATAAACATGTAGCTCCTGGTCAAGTGGTGCCCCTTTCCGTGCCATCCCAGCAATTTCTTCCAAATTCAGTCCCTCCTGCTGCCTTTTCTGGGCCCCTCCCCATACCATCTTCTGTTCAACCAGCAATCCCACAACCCCTGCCACATTTATTGCCAGGTCAAGCTGCTACCAGCGGCGAGAAGTTGCCACCATATCCTTTGTTCCCACCTGGTCTTATTCCTGAGATGGTCAGAAAGATGCAGATTGGCAGTGGGGTGCCATACTCACCGATGAGTCCTCTGGACATTCCAACCATCATACCTCCATCCACTGTACCTCAGTCCGAAATTCTTGAGAGAGTGTCAAAGTTCTTCAAAGAGATTGGAGAAGTTAACCCTTCTGAAGGACCTATTCATGGTTCTGATGGTAGAGACGATGATGAGTACGAAAGTAGTACTCCGGCACGCAAGGGAGGAGCTTGCATCCCTCCACCCCCAAACCTGCAGGTAGACCCAGAGACTGGGGCATATGCAGATGGAAGTGTTGATCGAAAGAGTGGCTCGGGGAGATTGGGACTCGGGGCCACAGCTAATCCAAATGAGGTGAGCCAGTACGACGATGTCTATTCTTCTTACCGGAAACAGAGAAGCACCAACTACCACTCTTCCATGAGTGCAAGAGCTGCAGCAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0007204 GO:0008150 GO:0008285 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0012505 GO:0016020 GO:0016528 GO:0016529 GO:0019725 GO:0023051 GO:0023056 GO:0030001 GO:0030003 GO:0031090 GO:0031984 GO:0032879 GO:0033017 GO:0034220 GO:0042127 GO:0042175 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044325 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050848 GO:0050850 GO:0051179 GO:0051209 GO:0051234 GO:0051282 GO:0051283 GO:0051480 GO:0051641 GO:0051649 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055085 GO:0060401 GO:0060402 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0070884 GO:0070886 GO:0072503 GO:0072507 GO:0072511 GO:0097553 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098827 GO:0106056 GO:0106058 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CTD_bind Surp

Protein Analysis

655

Amino Acids

71.77

Weight (kDa)

5.98

Isoelectric Point (pI)

64.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Surp	PF01805	123 - 171	1.5e-14	Surp module
CID	PF04818	255 - 378	4.9e-21	CID domain
SWAP1_C	PF25123	494 - 654	2e-89	SUPPRESSOR-OF-WHITE-APRICOT-like, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31200 AT4G31200 AT4G31200
fragaria_vesca	FvH4_2g36600
malus_domestica	MD08G1126000.v1.1 MD15G1105800.v1.1
prunus_persica	Prupe.1G457600_v2.0.a1 Prupe.1G457600_v2.0.a1 Prupe.1G457600_v2.0.a1
pyrus_communis	pycom08g10510 pycom15g09600 pycom15g09640
rosa_chinensis	RchiOBHm_Chr6g0305221
rosa_laevigata	RLG00000010907
rosa_multiflora	Rmu_co8150504.1_g000001
rosa_roxburghii	Rroxscaffold_7G00163030
rosa_rugosa	Rorug06G0338700
rosa_samantha	Rh6AG450400 Rh6BG451000 Rh6CG464300 Rh6DG451000
rosa_wichuraiana	Rw6G039250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	383, 799
Acc36I	ACCTGC	2 cut(s)	1765, 1779
Acc65I	GGTACC	1 cut(s)	108
AccB1I	GGYRCC	4 cut(s)	108, 703, 1318, 1546
AccB7I	CCANNNNNTGG	1 cut(s)	1790
AccI	GTMKAC	1 cut(s)	1779
AccII	CGCG	2 cut(s)	230, 432
AclWI	GGATC	3 cut(s)	12, 380, 890
AcoI	YGGCCR	1 cut(s)	333
AcsI	RAATTY	3 cut(s)	1080, 1354, 1617
AcuI	CTGAAG	1 cut(s)	1692
AcyI	GRCGYC	1 cut(s)	704
AfaI	GTAC	6 cut(s)	110, 392, 1605, 1715, 1726, 1883
AflIII	ACRYGT	2 cut(s)	913, 1297
AgsI	TTSAA	4 cut(s)	535, 1209, 1409, 1645
AjnI	CCWGG	7 cut(s)	117, 213, 696, 1177, 1306, 1444, 1498
Alw21I	GWGCWC	1 cut(s)	363
Alw26I	GTCTC	2 cut(s)	1695, 1781
AlwI	GGATC	3 cut(s)	12, 380, 890
AlwNI	CAGNNNCTG	1 cut(s)	1790
Ama87I	CYCGRG	3 cut(s)	519, 1831, 1847
ApaI	GGGCCC	1 cut(s)	1386
ApoI	RAATTY	3 cut(s)	1080, 1354, 1617
ArsI	GACNNNNNNTTYG	2 cut(s)	926, 958
Asp718I	GGTACC	1 cut(s)	108
AspLEI	GCGC	2 cut(s)	232, 706
AsuC2I	CCSGG	1 cut(s)	356
AsuHPI	GGTGA	5 cut(s)	233, 239, 980, 1548, 1885
AsuII	TTCGAA	1 cut(s)	417
AvaI	CYCGRG	3 cut(s)	519, 1831, 1847
AvaII	GGWCC	8 cut(s)	149, 341, 407, 684, 760, 792, 1157, 1676
BaeGI	GKGCMC	2 cut(s)	1323, 1386
BanI	GGYRCC	4 cut(s)	108, 703, 1318, 1546
BanII	GRGCYC	2 cut(s)	363, 1386
BbsI	GAAGAC	2 cut(s)	1062, 1175
Bbv12I	GWGCWC	1 cut(s)	363
BbvCI	CCTCAGC	1 cut(s)	861
BccI	CCATC	9 cut(s)	607, 1168, 1342, 1405, 1510, 1592, 1603, 1688, 1799
BceAI	ACGGC	2 cut(s)	151, 502
BcgI	CGANNNNNNTGC	2 cut(s)	974, 1008
BciT130I	CCWGG	7 cut(s)	119, 215, 698, 1179, 1308, 1446, 1500
BciVI	GTATCC	1 cut(s)	1114
BclI	TGATCA	1 cut(s)	1114
BcnI	CCSGG	1 cut(s)	356
BcoDI	GTCTC	2 cut(s)	1695, 1781
BfmI	CTRYAG	2 cut(s)	1772, 1953
BfoI	RGCGCY	1 cut(s)	707
BfuAI	ACCTGC	2 cut(s)	1765, 1779
BfuI	GTATCC	1 cut(s)	1114
BglI	GCCNNNNNGGC	2 cut(s)	1237, 1249
BmcAI	AGTACT	2 cut(s)	392, 1726
Bme1390I	CCNGG	8 cut(s)	119, 215, 356, 698, 1179, 1308, 1446, 1500
Bme18I	GGWCC	8 cut(s)	149, 341, 407, 684, 760, 792, 1157, 1676
BmeT110I	CYCGRG	3 cut(s)	519, 1831, 1847
BmrFI	CCNGG	8 cut(s)	119, 215, 356, 698, 1179, 1308, 1446, 1500
BmrI	ACTGGG	1 cut(s)	1800
BmsI	GCATC	4 cut(s)	1120, 1294, 1518, 1761
BmuI	ACTGGG	1 cut(s)	1800
BpiI	GAAGAC	2 cut(s)	1062, 1175
BpmI	CTGGAG	1 cut(s)	152
Bpu10I	CCTNAGC	2 cut(s)	764, 861
Bpu14I	TTCGAA	1 cut(s)	417
BpuEI	CTTGAG	1 cut(s)	1643
BpuMI	CCSGG	1 cut(s)	356
BsaHI	GRCGYC	1 cut(s)	704
BsaJI	CCNNGG	3 cut(s)	117, 213, 484
BsaWI	WCCGGW	1 cut(s)	1905
Bse118I	RCCGGY	3 cut(s)	317, 338, 706
Bse1I	ACTGG	3 cut(s)	970, 1795, 1879
Bse3DI	GCAATG	2 cut(s)	762, 775
BseBI	CCWGG	7 cut(s)	119, 215, 698, 1179, 1308, 1446, 1500
BseDI	CCNNGG	3 cut(s)	117, 213, 484
BseGI	GGATG	3 cut(s)	1334, 1595, 1752
BseMI	GCAATG	2 cut(s)	762, 775
BseMII	CTCAG	5 cut(s)	755, 852, 891, 1503, 1622
BseNI	ACTGG	3 cut(s)	970, 1795, 1879
BseRI	GAGGAG	3 cut(s)	315, 318, 1758
BseSI	GKGCMC	2 cut(s)	1323, 1386
BseX3I	CGGCCG	1 cut(s)	333
BseYI	CCCAGC	1 cut(s)	1338
Bsh1236I	CGCG	2 cut(s)	230, 432
Bsh1285I	CGRYCG	1 cut(s)	336
BshNI	GGYRCC	4 cut(s)	108, 703, 1318, 1546
BsiEI	CGRYCG	1 cut(s)	336
BsiHKAI	GWGCWC	1 cut(s)	363
BsiHKCI	CYCGRG	3 cut(s)	519, 1831, 1847
BsiSI	CCGG	8 cut(s)	318, 332, 339, 356, 707, 851, 1730, 1906
BslFI	GGGAC	4 cut(s)	284, 805, 1346, 1857
BsmAI	GTCTC	2 cut(s)	1695, 1781
BsmBI	CGTCTC	1 cut(s)	1695
BsmFI	GGGAC	4 cut(s)	284, 805, 1346, 1857
BsoBI	CYCGRG	3 cut(s)	519, 1831, 1847
Bsp119I	TTCGAA	1 cut(s)	417
Bsp120I	GGGCCC	1 cut(s)	1382
Bsp1286I	GDGCHC	3 cut(s)	363, 1323, 1386
Bsp143I	GATC	6 cut(s)	4, 372, 895, 1114, 1276, 1816
Bsp68I	TCGCGA	1 cut(s)	432
BspCNI	CTCAG	5 cut(s)	756, 853, 892, 1504, 1621
BspFNI	CGCG	2 cut(s)	230, 432
BspMAI	CTGCAG	2 cut(s)	1776, 1957
BspMI	ACCTGC	2 cut(s)	1765, 1779
BspPI	GGATC	3 cut(s)	12, 380, 890
BspT104I	TTCGAA	1 cut(s)	417
BspT107I	GGYRCC	4 cut(s)	108, 703, 1318, 1546
BsrDI	GCAATG	2 cut(s)	762, 775
BsrFI	RCCGGY	3 cut(s)	317, 338, 706
BsrI	ACTGG	3 cut(s)	970, 1795, 1879
BssAI	RCCGGY	3 cut(s)	317, 338, 706
BssECI	CCNNGG	3 cut(s)	117, 213, 484
BssMI	GATC	6 cut(s)	4, 372, 895, 1114, 1276, 1816
BssNI	GRCGYC	1 cut(s)	704
Bst2UI	CCWGG	7 cut(s)	119, 215, 698, 1179, 1308, 1446, 1500
Bst4CI	ACNGT	3 cut(s)	129, 497, 1603
Bst6I	CTCTTC	2 cut(s)	473, 1939
BstACI	GRCGYC	1 cut(s)	704
BstAPI	GCANNNNNTGC	2 cut(s)	1084, 1952
BstBI	TTCGAA	1 cut(s)	417
BstC8I	GCNNGC	8 cut(s)	12, 267, 319, 623, 708, 1023, 1735, 1750
BstDEI	CTNAG	9 cut(s)	764, 816, 861, 869, 900, 1009, 1195, 1512, 1608
BstDSI	CCRYGG	1 cut(s)	484
BstENI	CCTNNNNNAGG	2 cut(s)	1008, 1671
BstF5I	GGATG	3 cut(s)	1334, 1595, 1752
BstFNI	CGCG	2 cut(s)	230, 432
BstH2I	RGCGCY	1 cut(s)	707
BstHHI	GCGC	2 cut(s)	232, 706
BstKTI	GATC	6 cut(s)	7, 375, 898, 1117, 1279, 1819
BstMAI	GTCTC	2 cut(s)	1695, 1781
BstMBI	GATC	6 cut(s)	4, 372, 895, 1114, 1276, 1816
BstMCI	CGRYCG	1 cut(s)	336
BstNI	CCWGG	7 cut(s)	119, 215, 698, 1179, 1308, 1446, 1500
BstNSI	RCATGY	3 cut(s)	565, 917, 1301
BstSCI	CCNGG	8 cut(s)	117, 213, 354, 696, 1177, 1306, 1444, 1498
BstSFI	CTRYAG	2 cut(s)	1772, 1953
BstSLI	GKGCMC	2 cut(s)	1323, 1386
BstUI	CGCG	2 cut(s)	230, 432
BstV2I	GAAGAC	2 cut(s)	1062, 1175
BstZI	CGGCCG	1 cut(s)	333
BsuI	GTATCC	1 cut(s)	1114
BtgI	CCRYGG	1 cut(s)	484
BtsCI	GGATG	3 cut(s)	1334, 1595, 1752
BtsI	GCAGTG	1 cut(s)	1546
BtsIMutI	CAGTG	2 cut(s)	1546, 1599
BtuMI	TCGCGA	1 cut(s)	432
BveI	ACCTGC	2 cut(s)	1765, 1779
Cac8I	GCNNGC	8 cut(s)	12, 267, 319, 623, 708, 1023, 1735, 1750
CaiI	CAGNNNCTG	1 cut(s)	1790
CfoI	GCGC	2 cut(s)	232, 706
Cfr10I	RCCGGY	3 cut(s)	317, 338, 706
CseI	GACGC	1 cut(s)	790
CsiI	ACCWGGT	1 cut(s)	1498
Csp6I	GTAC	6 cut(s)	109, 391, 1604, 1714, 1725, 1882
CspCI	CAANNNNNGTGG	2 cut(s)	1422, 1457
CviAII	CATG	7 cut(s)	424, 562, 914, 1018, 1298, 1685, 1939
CviQI	GTAC	6 cut(s)	109, 391, 1604, 1714, 1725, 1882
DdeI	CTNAG	9 cut(s)	764, 816, 861, 869, 900, 1009, 1195, 1512, 1608
DinI	GGCGCC	1 cut(s)	705
DpnI	GATC	6 cut(s)	6, 374, 897, 1116, 1278, 1818
DpnII	GATC	6 cut(s)	4, 372, 895, 1114, 1276, 1816
DraI	TTTAAA	1 cut(s)	721
DrdI	GACNNNNNNGTC	2 cut(s)	383, 799
DseDI	GACNNNNNNGTC	2 cut(s)	383, 799
EaeI	YGGCCR	1 cut(s)	333
EagI	CGGCCG	1 cut(s)	333
Eam1104I	CTCTTC	2 cut(s)	473, 1939
EarI	CTCTTC	2 cut(s)	473, 1939
EciI	GGCGGA	3 cut(s)	252, 385, 564
Ecl136II	GAGCTC	1 cut(s)	361
EclXI	CGGCCG	1 cut(s)	333
Eco147I	AGGCCT	1 cut(s)	975
Eco24I	GRGCYC	2 cut(s)	363, 1386
Eco47I	GGWCC	8 cut(s)	149, 341, 407, 684, 760, 792, 1157, 1676
Eco52I	CGGCCG	1 cut(s)	333
Eco53kI	GAGCTC	1 cut(s)	361
Eco57I	CTGAAG	1 cut(s)	1692
Eco88I	CYCGRG	3 cut(s)	519, 1831, 1847
EcoICRI	GAGCTC	1 cut(s)	361
EcoNI	CCTNNNNNAGG	2 cut(s)	1008, 1671
EcoO109I	RGGNCCY	2 cut(s)	1383, 1676
EcoRII	CCWGG	7 cut(s)	117, 213, 696, 1177, 1306, 1444, 1498
EcoT22I	ATGCAT	1 cut(s)	1135
EcoT38I	GRGCYC	2 cut(s)	363, 1386
EgeI	GGCGCC	1 cut(s)	705
EheI	GGCGCC	1 cut(s)	705
Esp3I	CGTCTC	1 cut(s)	1695
FaeI	CATG	7 cut(s)	427, 565, 917, 1021, 1301, 1688, 1942
FalI	AAGNNNNNCTT	4 cut(s)	1156, 1188, 1272, 1304
FaqI	GGGAC	4 cut(s)	284, 805, 1346, 1857
FatI	CATG	7 cut(s)	423, 561, 913, 1017, 1297, 1684, 1938
FauI	CCCGC	3 cut(s)	168, 312, 630
FauNDI	CATATG	1 cut(s)	1798
FbaI	TGATCA	1 cut(s)	1114
FblI	GTMKAC	1 cut(s)	1779
FokI	GGATG	3 cut(s)	1321, 1582, 1739
FriOI	GRGCYC	2 cut(s)	363, 1386
GlaI	GCGC	2 cut(s)	231, 705
GsaI	CCCAGC	1 cut(s)	1342
GsuI	CTGGAG	1 cut(s)	152
HaeII	RGCGCY	1 cut(s)	707
HapII	CCGG	8 cut(s)	318, 332, 339, 356, 707, 851, 1730, 1906
HgaI	GACGC	1 cut(s)	790
HhaI	GCGC	2 cut(s)	232, 706
Hin1I	GRCGYC	1 cut(s)	704
Hin1II	CATG	7 cut(s)	427, 565, 917, 1021, 1301, 1688, 1942
Hin6I	GCGC	2 cut(s)	230, 704
HinP1I	GCGC	2 cut(s)	230, 704
HincII	GTYRAC	1 cut(s)	1663
HindII	GTYRAC	1 cut(s)	1663
HinfI	GANTC	8 cut(s)	427, 541, 580, 800, 986, 1214, 1564, 1845
HpaI	GTTAAC	1 cut(s)	1663
HpaII	CCGG	8 cut(s)	318, 332, 339, 356, 707, 851, 1730, 1906
HphI	GGTGA	5 cut(s)	233, 239, 980, 1548, 1885
Hpy166II	GTNNAC	4 cut(s)	1157, 1271, 1663, 1780
Hpy188I	TCNGA	9 cut(s)	149, 352, 671, 688, 1065, 1523, 1615, 1672, 1693
Hpy8I	GTNNAC	4 cut(s)	1157, 1271, 1663, 1780
Hpy99I	CGWCG	3 cut(s)	389, 963, 1889
HpyAV	CCTTC	6 cut(s)	190, 280, 473, 965, 1667, 1677
HpyCH4III	ACNGT	3 cut(s)	129, 497, 1603
HpyF3I	CTNAG	9 cut(s)	764, 816, 861, 869, 900, 1009, 1195, 1512, 1608
Hsp92I	GRCGYC	1 cut(s)	704
Hsp92II	CATG	7 cut(s)	427, 565, 917, 1021, 1301, 1688, 1942
HspAI	GCGC	2 cut(s)	230, 704
KasI	GGCGCC	1 cut(s)	703
KpnI	GGTACC	1 cut(s)	112
KroI	GCCGGC	2 cut(s)	317, 706
KroNI	GCCGGC	2 cut(s)	319, 708
Ksp22I	TGATCA	1 cut(s)	1114
KspAI	GTTAAC	1 cut(s)	1663
Kzo9I	GATC	6 cut(s)	4, 372, 895, 1114, 1276, 1816
LmnI	GCTCC	7 cut(s)	358, 366, 559, 812, 853, 1309, 1745
LweI	GCATC	4 cut(s)	1120, 1294, 1518, 1761
MabI	ACCWGGT	1 cut(s)	1498
MaeIII	GTNAC	1 cut(s)	497
MalI	GATC	6 cut(s)	6, 374, 897, 1116, 1278, 1818
MboI	GATC	6 cut(s)	4, 372, 895, 1114, 1276, 1816
MboII	GAAGA	8 cut(s)	460, 1067, 1175, 1340, 1392, 1633, 1890, 1926
MfeI	CAATTG	1 cut(s)	1125
MhlI	GDGCHC	3 cut(s)	363, 1323, 1386
MluCI	AATT	9 cut(s)	101, 173, 548, 1080, 1125, 1168, 1343, 1354, 1617
Mly113I	GGCGCC	1 cut(s)	704
MlyI	GAGTC	3 cut(s)	809, 1573, 1839
MmeI	TCCRAC	2 cut(s)	375, 1604
Mph1103I	ATGCAT	1 cut(s)	1135
MroNI	GCCGGC	2 cut(s)	317, 706
MseI	TTAA	3 cut(s)	720, 807, 1662
MspA1I	CMGCKG	3 cut(s)	649, 739, 1464
MspI	CCGG	8 cut(s)	318, 332, 339, 356, 707, 851, 1730, 1906
MspR9I	CCNGG	8 cut(s)	119, 215, 356, 698, 1179, 1308, 1446, 1500
MunI	CAATTG	1 cut(s)	1125
MvaI	CCWGG	7 cut(s)	119, 215, 698, 1179, 1308, 1446, 1500
MvnI	CGCG	2 cut(s)	230, 432
NaeI	GCCGGC	2 cut(s)	319, 708
NarI	GGCGCC	1 cut(s)	704
NciI	CCSGG	1 cut(s)	356
NdeI	CATATG	1 cut(s)	1798
NdeII	GATC	6 cut(s)	4, 372, 895, 1114, 1276, 1816
NgoMIV	GCCGGC	2 cut(s)	317, 706
NlaIII	CATG	7 cut(s)	427, 565, 917, 1021, 1301, 1688, 1942
NruI	TCGCGA	1 cut(s)	432
NsiI	ATGCAT	1 cut(s)	1135
NspI	RCATGY	3 cut(s)	565, 917, 1301
NspV	TTCGAA	1 cut(s)	417
PceI	AGGCCT	1 cut(s)	975
PciI	ACATGT	2 cut(s)	913, 1297
PcsI	WCGNNNNNNNCGW	2 cut(s)	381, 536
PdiI	GCCGGC	2 cut(s)	319, 708
PfeI	GAWTC	5 cut(s)	427, 541, 580, 986, 1214
PflFI	GACNNNGTC	1 cut(s)	1889
PflMI	CCANNNNNTGG	1 cut(s)	1790
PleI	GAGTC	3 cut(s)	808, 1572, 1839
PluTI	GGCGCC	1 cut(s)	707
PpsI	GAGTC	3 cut(s)	808, 1572, 1839
PpuMI	RGGWCCY	1 cut(s)	1676
PscI	ACATGT	2 cut(s)	913, 1297
Psp124BI	GAGCTC	1 cut(s)	363
Psp5II	RGGWCCY	1 cut(s)	1676
Psp6I	CCWGG	7 cut(s)	117, 213, 696, 1177, 1306, 1444, 1498
PspFI	CCCAGC	1 cut(s)	1338
PspGI	CCWGG	7 cut(s)	117, 213, 696, 1177, 1306, 1444, 1498
PspOMI	GGGCCC	1 cut(s)	1382
PspPPI	RGGWCCY	1 cut(s)	1676
PstI	CTGCAG	2 cut(s)	1776, 1957
PstNI	CAGNNNCTG	1 cut(s)	1790
PsyI	GACNNNGTC	1 cut(s)	1889
RruI	TCGCGA	1 cut(s)	432
RsaI	GTAC	6 cut(s)	110, 392, 1605, 1715, 1726, 1883
RsaNI	GTAC	6 cut(s)	109, 391, 1604, 1714, 1725, 1882
SacI	GAGCTC	1 cut(s)	363
SaqAI	TTAA	3 cut(s)	720, 807, 1662
Sau3AI	GATC	6 cut(s)	4, 372, 895, 1114, 1276, 1816
SbfI	CCTGCAGG	1 cut(s)	1776
ScaI	AGTACT	2 cut(s)	392, 1726
SchI	GAGTC	3 cut(s)	809, 1573, 1839
ScrFI	CCNGG	8 cut(s)	119, 215, 356, 698, 1179, 1308, 1446, 1500
SdaI	CCTGCAGG	1 cut(s)	1776
SduI	GDGCHC	3 cut(s)	363, 1323, 1386
SexAI	ACCWGGT	1 cut(s)	1498
SfaNI	GCATC	4 cut(s)	1120, 1294, 1518, 1761
SfcI	CTRYAG	2 cut(s)	1772, 1953
SfoI	GGCGCC	1 cut(s)	705
SfuI	TTCGAA	1 cut(s)	417
SinI	GGWCC	8 cut(s)	149, 341, 407, 684, 760, 792, 1157, 1676
SmlI	CTYRAG	1 cut(s)	1622
SmoI	CTYRAG	1 cut(s)	1622
Sse8387I	CCTGCAGG	1 cut(s)	1776
Sse9I	AATT	9 cut(s)	101, 173, 548, 1080, 1125, 1168, 1343, 1354, 1617
SseBI	AGGCCT	1 cut(s)	975
SspDI	GGCGCC	1 cut(s)	703
SstI	GAGCTC	1 cut(s)	363
StuI	AGGCCT	1 cut(s)	975
StyD4I	CCNGG	8 cut(s)	117, 213, 354, 696, 1177, 1306, 1444, 1498
TaaI	ACNGT	3 cut(s)	129, 497, 1603
TaqI	TCGA	8 cut(s)	375, 387, 417, 803, 945, 961, 1265, 1819
TasI	AATT	9 cut(s)	101, 173, 548, 1080, 1125, 1168, 1343, 1354, 1617
TatI	WGTACW	2 cut(s)	390, 1724
TfiI	GAWTC	5 cut(s)	427, 541, 580, 986, 1214
Tru1I	TTAA	3 cut(s)	720, 807, 1662
Tru9I	TTAA	3 cut(s)	720, 807, 1662
TscAI	CASTG	2 cut(s)	1546, 1606
TspDTI	ATGAA	3 cut(s)	605, 1082, 1673
TspGWI	ACGGA	5 cut(s)	336, 385, 420, 1067, 1318
TspRI	CASTG	2 cut(s)	1546, 1606
Tth111I	GACNNNGTC	1 cut(s)	1889
Van91I	CCANNNNNTGG	1 cut(s)	1790
VpaK11BI	GGWCC	8 cut(s)	149, 341, 407, 684, 760, 792, 1157, 1676
XagI	CCTNNNNNAGG	2 cut(s)	1008, 1671
XapI	RAATTY	3 cut(s)	1080, 1354, 1617
XceI	RCATGY	3 cut(s)	565, 917, 1301
XmiI	GTMKAC	1 cut(s)	1779
ZrmI	AGTACT	2 cut(s)	392, 1726
Zsp2I	ATGCAT	1 cut(s)	1135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.