Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009244

Physical Location & Seq

Genomic Coordinates Reverse (-)

49047041 .. 49050406

Gene Structure 3366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0338700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGTTGCTCAGAATTCGCAGCAGAGACGGCCTGGAACGACTCACAGTCGAAAACCCACACGCCACGGTGGCCCAACTCAAAGCCTTAATCCAAACCAACCTTCGAATTCCTCTGGAGAACCAAACCCTCTCCACCAACCAAAACCTTCTTCTGGCGAAGAGCGCCGACGACCTCACTCGCTTCACCGACATGGCCAACCCTAACACCCCTCTATCGGCGCTTAATCTCGCTCATGGTTCGATTGTTTTCTTGGCCTACGAGGGCGAGCGGACCGTCGCCGGGCCCAATTTCCAGCCGGCGGGGTCGTTCGGCCGGAAGATGACCATGGACGACCTCATCGCCAAGCAGATGAAGGTCACGCGCCAGGAGACTCCGCATTGCGAGCTCGTCTCGTTCGATCGCGACTGCGCCAACGCGTTCCAGCACTACGTGAACGACACGCTCGCCTTCGCCGTGAAGCGGGGAGGGTTCATGTTCGGCACGGTGTCGGAGGAGGGCAAGGTGGAGGTGGATTTCATCTACGAGCCGCCGCAGCAGGGGACGGAGGAGAATCTGACGCTTTTCCGGGACCCGGAGGAGGAGAAGGCGGTGGAGGCGATTGCGTTAGGGTTGGGGATGAGGAAGGTCGGGTTTATATTCACACAGTCGGTTGGGCAGGACACCAAGGACTATACATTGTCGAATAGGGAGGTGCTTCAGGCGGCGGAGTTTCACGCCGAGAGTGGGTTGAAGGAGTGGGTGACTGCAATGGTGAAGTTGGAGGTGAATGAGGATGGTGCTGCTGATGTGCATTTCGAAGCTTTTCAGATGAGTGATATGTGTATTAGGTTGTTTAAAGAAGGGTGGTTCGAGACTGAGATTGGGGAGGATCAGGATCCCAAGTTGTCCAAGATGAAGAAGGATGTTGTTGTTGGAGTGAAGGATGTTAGAGAAGTGGACAATGATTTCTTCTTGGTGGTGGTAAAGATCTTCGATCACCAGGGGCCTCTTTCATCCACCTTTCCCATTGAGAATCGTATCACCCCAGTGACGTTGAGGGCTCTGAAAACCCATATGGACCGTGCTAAGAGTCTTCCATATGTGAAGCGAATTGCAGATTTTCATTTGATGCTTTTACTTGCAAGGTTTTTAGACGTAAATGCTGATGTTCCTGCTTTGGCCGAGTGTGTCCGTACACAGTCAGCCATACCAGAAGGCTACCAGTTACTAATTGAGTCGATGGCCAATTCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0007204 GO:0008150 GO:0008285 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0012505 GO:0016020 GO:0016528 GO:0016529 GO:0019725 GO:0023051 GO:0023056 GO:0030001 GO:0030003 GO:0031090 GO:0031984 GO:0032879 GO:0033017 GO:0034220 GO:0042127 GO:0042175 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044325 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050848 GO:0050850 GO:0051179 GO:0051209 GO:0051234 GO:0051282 GO:0051283 GO:0051480 GO:0051641 GO:0051649 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055085 GO:0060401 GO:0060402 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0070884 GO:0070886 GO:0072503 GO:0072507 GO:0072511 GO:0097553 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098827 GO:0106056 GO:0106058 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CTD_bind Surp

Protein Analysis

411

Amino Acids

46.08

Weight (kDa)

5.11

Isoelectric Point (pI)

29.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UN_NPL4	PF11543	1 - 84	5e-06	Nuclear pore localisation protein NPL4
NPL4	PF05021	167 - 281	6.3e-12	NPL4 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31200 AT4G31200 AT4G31200
fragaria_vesca	FvH4_2g36600
malus_domestica	MD08G1126000.v1.1 MD15G1105800.v1.1
prunus_persica	Prupe.1G457600_v2.0.a1 Prupe.1G457600_v2.0.a1 Prupe.1G457600_v2.0.a1
pyrus_communis	pycom08g10510 pycom15g09600 pycom15g09640
rosa_chinensis	RchiOBHm_Chr6g0305221
rosa_laevigata	RLG00000010907
rosa_multiflora	Rmu_co8150504.1_g000001
rosa_roxburghii	Rroxscaffold_7G00163030
rosa_rugosa	Rorug06G0338700
rosa_samantha	Rh6AG450400 Rh6BG451000 Rh6CG464300 Rh6DG451000
rosa_wichuraiana	Rw6G039250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	268
AccII	CGCG	3 cut(s)	361, 402, 416
AciI	CCGC	9 cut(s)	268, 299, 374, 460, 527, 530, 587, 701, 704
AclWI	GGATC	3 cut(s)	869, 876, 882
AcoI	YGGCCR	4 cut(s)	192, 310, 1158, 1221
AcsI	RAATTY	2 cut(s)	12, 105
AcuI	CTGAAG	1 cut(s)	680
AdeI	CACNNNGTG	1 cut(s)	430
AfaI	GTAC	1 cut(s)	1174
AfiI	CCNNNNNNNGG	9 cut(s)	151, 214, 279, 298, 459, 536, 571, 577, 723
AflIII	ACRYGT	1 cut(s)	414
AgsI	TTSAA	1 cut(s)	730
AhdI	GACNNNNNGTC	1 cut(s)	44
AjnI	CCWGG	3 cut(s)	30, 363, 978
AjuI	GAANNNNNNNTTGG	4 cut(s)	84, 116, 132, 164
AleI	CACNNNNGTG	1 cut(s)	1025
AluBI	AGCT	2 cut(s)	385, 800
AluI	AGCT	2 cut(s)	385, 800
Alw21I	GWGCWC	1 cut(s)	387
Alw26I	GTCTC	4 cut(s)	18, 362, 394, 845
AlwI	GGATC	3 cut(s)	869, 876, 882
AoxI	GGCC	9 cut(s)	28, 69, 192, 252, 281, 310, 983, 1158, 1221
ApaI	GGGCCC	1 cut(s)	285
ApeKI	GCWGC	3 cut(s)	18, 532, 779
ApoI	RAATTY	2 cut(s)	12, 105
Asp700I	GAANNNNTTC	1 cut(s)	801
AspLEI	GCGC	4 cut(s)	164, 220, 363, 410
AspS9I	GGNCC	7 cut(s)	70, 270, 281, 282, 568, 983, 1057
AsuC2I	CCSGG	3 cut(s)	280, 566, 572
AsuHPI	GGTGA	6 cut(s)	175, 751, 763, 775, 968, 1012
AsuII	TTCGAA	2 cut(s)	103, 795
AvaII	GGWCC	3 cut(s)	270, 568, 1057
BaeGI	GKGCMC	1 cut(s)	285
BalI	TGGCCA	2 cut(s)	194, 1223
BamHI	GGATCC	1 cut(s)	874
BanII	GRGCYC	3 cut(s)	285, 387, 1042
BbsI	GAAGAC	1 cut(s)	1064
Bbv12I	GWGCWC	1 cut(s)	387
BbvI	GCAGC	3 cut(s)	30, 544, 766
BccI	CCATC	2 cut(s)	767, 1213
BceAI	ACGGC	2 cut(s)	43, 437
BciT130I	CCWGG	3 cut(s)	32, 365, 980
BcnI	CCSGG	3 cut(s)	280, 566, 572
BcoDI	GTCTC	4 cut(s)	18, 362, 394, 845
BfoI	RGCGCY	2 cut(s)	165, 221
BglI	GCCNNNNNGGC	1 cut(s)	68
BglII	AGATCT	1 cut(s)	966
BisI	GCNGC	6 cut(s)	19, 527, 530, 533, 702, 780
BlsI	GCNGC	6 cut(s)	20, 528, 531, 534, 703, 781
Bme1390I	CCNGG	6 cut(s)	32, 280, 365, 566, 572, 980
Bme18I	GGWCC	3 cut(s)	270, 568, 1057
BmeRI	GACNNNNNGTC	1 cut(s)	44
BmgT120I	GGNCC	7 cut(s)	70, 270, 281, 282, 568, 983, 1057
BmiI	GGNNCC	5 cut(s)	283, 569, 570, 876, 984
BmrFI	CCNGG	6 cut(s)	32, 280, 365, 566, 572, 980
BmrI	ACTGGG	1 cut(s)	1019
BmsI	GCATC	1 cut(s)	1098
BmuI	ACTGGG	1 cut(s)	1019
BpiI	GAAGAC	1 cut(s)	1064
BplI	GAGNNNNNCTC	2 cut(s)	374, 406
BpmI	CTGGAG	1 cut(s)	134
Bpu14I	TTCGAA	2 cut(s)	103, 795
BpuMI	CCSGG	3 cut(s)	280, 566, 572
BsaAI	YACGTR	1 cut(s)	430
BsaBI	GATNNNNATC	1 cut(s)	873
BsaJI	CCNNGG	4 cut(s)	63, 324, 663, 979
Bsc4I	CCNNNNNNNGG	9 cut(s)	151, 214, 279, 298, 459, 536, 571, 577, 723
Bse118I	RCCGGY	1 cut(s)	295
Bse1I	ACTGG	2 cut(s)	1025, 1201
Bse3DI	GCAATG	2 cut(s)	376, 753
Bse8I	GATNNNNATC	1 cut(s)	873
BseBI	CCWGG	3 cut(s)	32, 365, 980
BseDI	CCNNGG	4 cut(s)	63, 324, 663, 979
BseGI	GGATG	5 cut(s)	621, 778, 907, 928, 992
BseJI	GATNNNNATC	1 cut(s)	873
BseLI	CCNNNNNNNGG	9 cut(s)	151, 214, 279, 298, 459, 536, 571, 577, 723
BseMI	GCAATG	2 cut(s)	376, 753
BseMII	CTCAG	2 cut(s)	22, 846
BseNI	ACTGG	2 cut(s)	1025, 1201
BseRI	GAGGAG	4 cut(s)	506, 560, 590, 593
BseSI	GKGCMC	1 cut(s)	285
BseX3I	CGGCCG	1 cut(s)	310
BseXI	GCAGC	3 cut(s)	30, 544, 766
Bsh1236I	CGCG	3 cut(s)	361, 402, 416
Bsh1285I	CGRYCG	2 cut(s)	313, 400
BshFI	GGCC	9 cut(s)	30, 71, 194, 254, 283, 312, 985, 1160, 1223
BsiEI	CGRYCG	2 cut(s)	313, 400
BsiHKAI	GWGCWC	1 cut(s)	387
BsiSI	CCGG	5 cut(s)	279, 296, 313, 565, 572
BslFI	GGGAC	2 cut(s)	553, 581
BslI	CCNNNNNNNGG	9 cut(s)	151, 214, 279, 298, 459, 536, 571, 577, 723
BsmAI	GTCTC	4 cut(s)	18, 362, 394, 845
BsmBI	CGTCTC	2 cut(s)	18, 394
BsmFI	GGGAC	2 cut(s)	553, 581
BsnI	GGCC	9 cut(s)	30, 71, 194, 254, 283, 312, 985, 1160, 1223
Bsp119I	TTCGAA	2 cut(s)	103, 795
Bsp120I	GGGCCC	1 cut(s)	281
Bsp1286I	GDGCHC	3 cut(s)	285, 387, 1042
Bsp143I	GATC	5 cut(s)	397, 868, 874, 966, 973
Bsp19I	CCATGG	1 cut(s)	324
Bsp68I	TCGCGA	1 cut(s)	402
BspACI	CCGC	9 cut(s)	268, 299, 374, 460, 527, 530, 587, 701, 704
BspANI	GGCC	9 cut(s)	30, 71, 194, 254, 283, 312, 985, 1160, 1223
BspCNI	CTCAG	2 cut(s)	21, 847
BspFNI	CGCG	3 cut(s)	361, 402, 416
BspLI	GGNNCC	5 cut(s)	283, 569, 570, 876, 984
BspPI	GGATC	3 cut(s)	869, 876, 882
BspQI	GCTCTTC	1 cut(s)	152
BspT104I	TTCGAA	2 cut(s)	103, 795
BsrBI	CCGCTC	1 cut(s)	268
BsrDI	GCAATG	2 cut(s)	376, 753
BsrFI	RCCGGY	1 cut(s)	295
BsrI	ACTGG	2 cut(s)	1025, 1201
BssAI	RCCGGY	1 cut(s)	295
BssECI	CCNNGG	4 cut(s)	63, 324, 663, 979
BssMI	GATC	5 cut(s)	397, 868, 874, 966, 973
BssT1I	CCWWGG	2 cut(s)	324, 663
Bst2UI	CCWGG	3 cut(s)	32, 365, 980
Bst4CI	ACNGT	7 cut(s)	46, 67, 274, 484, 645, 1061, 1179
Bst6I	CTCTTC	1 cut(s)	152
BstBAI	YACGTR	1 cut(s)	430
BstBI	TTCGAA	2 cut(s)	103, 795
BstC8I	GCNNGC	4 cut(s)	266, 297, 383, 444
BstDEI	CTNAG	3 cut(s)	8, 855, 1065
BstDSI	CCRYGG	2 cut(s)	63, 324
BstF5I	GGATG	5 cut(s)	621, 778, 907, 928, 992
BstFNI	CGCG	3 cut(s)	361, 402, 416
BstH2I	RGCGCY	2 cut(s)	165, 221
BstHHI	GCGC	4 cut(s)	164, 220, 363, 410
BstKTI	GATC	5 cut(s)	400, 871, 877, 969, 976
BstMAI	GTCTC	4 cut(s)	18, 362, 394, 845
BstMBI	GATC	5 cut(s)	397, 868, 874, 966, 973
BstMCI	CGRYCG	2 cut(s)	313, 400
BstMWI	GCNNNNNNNGC	6 cut(s)	27, 68, 161, 382, 532, 593
BstNI	CCWGG	3 cut(s)	32, 365, 980
BstSCI	CCNGG	6 cut(s)	30, 278, 363, 564, 570, 978
BstSLI	GKGCMC	1 cut(s)	285
BstUI	CGCG	3 cut(s)	361, 402, 416
BstV1I	GCAGC	3 cut(s)	30, 544, 766
BstV2I	GAAGAC	1 cut(s)	1064
BstX2I	RGATCY	2 cut(s)	874, 966
BstYI	RGATCY	2 cut(s)	874, 966
BstZI	CGGCCG	1 cut(s)	310
BsuRI	GGCC	9 cut(s)	30, 71, 194, 254, 283, 312, 985, 1160, 1223
BtgI	CCRYGG	2 cut(s)	63, 324
BtgZI	GCGATG	1 cut(s)	322
BtsCI	GGATG	5 cut(s)	621, 778, 907, 928, 992
BtsIMutI	CAGTG	1 cut(s)	1032
BtuMI	TCGCGA	1 cut(s)	402
Cac8I	GCNNGC	4 cut(s)	266, 297, 383, 444
CfoI	GCGC	4 cut(s)	164, 220, 363, 410
Cfr10I	RCCGGY	1 cut(s)	295
Cfr13I	GGNCC	7 cut(s)	70, 270, 281, 282, 568, 983, 1057
CpoI	CGGWCCG	1 cut(s)	270
CseI	GACGC	1 cut(s)	565
Csp6I	GTAC	1 cut(s)	1173
CspI	CGGWCCG	1 cut(s)	270
CviAII	CATG	4 cut(s)	190, 233, 325, 472
CviQI	GTAC	1 cut(s)	1173
DdeI	CTNAG	3 cut(s)	8, 855, 1065
DpnI	GATC	5 cut(s)	399, 870, 876, 968, 975
DpnII	GATC	5 cut(s)	397, 868, 874, 966, 973
DraI	TTTAAA	1 cut(s)	835
DraIII	CACNNNGTG	1 cut(s)	430
DriI	GACNNNNNGTC	1 cut(s)	44
EaeI	YGGCCR	4 cut(s)	192, 310, 1158, 1221
EagI	CGGCCG	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	152
Eam1105I	GACNNNNNGTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	152
EciI	GGCGGA	1 cut(s)	719
Ecl136II	GAGCTC	1 cut(s)	385
EclXI	CGGCCG	1 cut(s)	310
Eco130I	CCWWGG	2 cut(s)	324, 663
Eco24I	GRGCYC	3 cut(s)	285, 387, 1042
Eco47I	GGWCC	3 cut(s)	270, 568, 1057
Eco52I	CGGCCG	1 cut(s)	310
Eco53kI	GAGCTC	1 cut(s)	385
Eco57I	CTGAAG	1 cut(s)	680
EcoICRI	GAGCTC	1 cut(s)	385
EcoO109I	RGGNCCY	2 cut(s)	568, 983
EcoRI	GAATTC	2 cut(s)	12, 105
EcoRII	CCWGG	3 cut(s)	30, 363, 978
EcoT14I	CCWWGG	2 cut(s)	324, 663
EcoT38I	GRGCYC	3 cut(s)	285, 387, 1042
ErhI	CCWWGG	2 cut(s)	324, 663
Esp3I	CGTCTC	2 cut(s)	18, 394
FaeI	CATG	4 cut(s)	193, 236, 328, 475
FaqI	GGGAC	2 cut(s)	553, 581
FatI	CATG	4 cut(s)	189, 232, 324, 471
FauI	CCCGC	2 cut(s)	292, 453
FauNDI	CATATG	2 cut(s)	1053, 1078
Fnu4HI	GCNGC	6 cut(s)	19, 527, 530, 533, 702, 780
FokI	GGATG	5 cut(s)	628, 785, 914, 935, 979
FriOI	GRGCYC	3 cut(s)	285, 387, 1042
Fsp4HI	GCNGC	6 cut(s)	19, 527, 530, 533, 702, 780
GlaI	GCGC	4 cut(s)	163, 219, 362, 409
GluI	GCNGC	6 cut(s)	19, 527, 530, 533, 702, 780
GsuI	CTGGAG	1 cut(s)	134
HaeII	RGCGCY	2 cut(s)	165, 221
HaeIII	GGCC	9 cut(s)	30, 71, 194, 254, 283, 312, 985, 1160, 1223
HapII	CCGG	5 cut(s)	279, 296, 313, 565, 572
HgaI	GACGC	1 cut(s)	565
HhaI	GCGC	4 cut(s)	164, 220, 363, 410
Hin1II	CATG	4 cut(s)	193, 236, 328, 475
Hin6I	GCGC	4 cut(s)	162, 218, 361, 408
HinP1I	GCGC	4 cut(s)	162, 218, 361, 408
HindIII	AAGCTT	1 cut(s)	798
HinfI	GANTC	6 cut(s)	39, 370, 550, 1012, 1069, 1214
HpaII	CCGG	5 cut(s)	279, 296, 313, 565, 572
HphI	GGTGA	6 cut(s)	175, 751, 763, 775, 968, 1012
Hpy166II	GTNNAC	3 cut(s)	433, 937, 1175
Hpy188I	TCNGA	5 cut(s)	11, 490, 555, 807, 1044
Hpy188III	TCNNGA	4 cut(s)	113, 401, 850, 872
Hpy8I	GTNNAC	3 cut(s)	433, 937, 1175
Hpy99I	CGWCG	2 cut(s)	170, 278
HpyCH4III	ACNGT	7 cut(s)	46, 67, 274, 484, 645, 1061, 1179
HpyCH4IV	ACGT	3 cut(s)	429, 1031, 1134
HpyCH4V	TGCA	4 cut(s)	746, 790, 1094, 1121
HpyF10VI	GCNNNNNNNGC	6 cut(s)	27, 68, 161, 382, 532, 593
HpyF3I	CTNAG	3 cut(s)	8, 855, 1065
HpySE526I	ACGT	3 cut(s)	429, 1031, 1134
Hsp92II	CATG	4 cut(s)	193, 236, 328, 475
HspAI	GCGC	4 cut(s)	162, 218, 361, 408
KflI	GGGWCCC	1 cut(s)	568
KroI	GCCGGC	1 cut(s)	295
KroNI	GCCGGC	1 cut(s)	297
Kzo9I	GATC	5 cut(s)	397, 868, 874, 966, 973
LguI	GCTCTTC	1 cut(s)	152
Lsp1109I	GCAGC	3 cut(s)	30, 544, 766
LweI	GCATC	1 cut(s)	1098
MaeII	ACGT	3 cut(s)	429, 1031, 1134
MaeIII	GTNAC	4 cut(s)	355, 739, 1027, 1203
MalI	GATC	5 cut(s)	399, 870, 876, 968, 975
MbiI	CCGCTC	1 cut(s)	268
MboI	GATC	5 cut(s)	397, 868, 874, 966, 973
MboII	GAAGA	8 cut(s)	140, 169, 328, 907, 940, 961, 1064, 1221
MflI	RGATCY	2 cut(s)	874, 966
MhlI	GDGCHC	3 cut(s)	285, 387, 1042
MlsI	TGGCCA	2 cut(s)	194, 1223
MluCI	AATT	6 cut(s)	12, 105, 286, 1089, 1209, 1225
MluI	ACGCGT	1 cut(s)	414
MluNI	TGGCCA	2 cut(s)	194, 1223
MlyI	GAGTC	4 cut(s)	33, 364, 1078, 1223
MmeI	TCCRAC	3 cut(s)	468, 738, 892
Mox20I	TGGCCA	2 cut(s)	194, 1223
MroNI	GCCGGC	1 cut(s)	295
MroXI	GAANNNNTTC	1 cut(s)	801
MscI	TGGCCA	2 cut(s)	194, 1223
MseI	TTAA	4 cut(s)	86, 222, 834, 1234
MslI	CAYNNNNRTG	2 cut(s)	188, 1025
Msp20I	TGGCCA	2 cut(s)	194, 1223
MspI	CCGG	5 cut(s)	279, 296, 313, 565, 572
MspR9I	CCNGG	6 cut(s)	32, 280, 365, 566, 572, 980
MvaI	CCWGG	3 cut(s)	32, 365, 980
MvnI	CGCG	3 cut(s)	361, 402, 416
MwoI	GCNNNNNNNGC	6 cut(s)	27, 68, 161, 382, 532, 593
NaeI	GCCGGC	1 cut(s)	297
NciI	CCSGG	3 cut(s)	280, 566, 572
NcoI	CCATGG	1 cut(s)	324
NdeI	CATATG	2 cut(s)	1053, 1078
NdeII	GATC	5 cut(s)	397, 868, 874, 966, 973
NgoMIV	GCCGGC	1 cut(s)	295
NlaIII	CATG	4 cut(s)	193, 236, 328, 475
NlaIV	GGNNCC	5 cut(s)	283, 569, 570, 876, 984
NmeAIII	GCCGAG	2 cut(s)	742, 1186
NmuCI	GTSAC	3 cut(s)	355, 739, 1027
NruI	TCGCGA	1 cut(s)	402
NspV	TTCGAA	2 cut(s)	103, 795
OliI	CACNNNNGTG	1 cut(s)	1025
PciSI	GCTCTTC	1 cut(s)	152
PcsI	WCGNNNNNNNCGW	2 cut(s)	393, 450
PdiI	GCCGGC	1 cut(s)	297
PdmI	GAANNNNTTC	1 cut(s)	801
PfeI	GAWTC	2 cut(s)	550, 1012
PfoI	TCCNGGA	1 cut(s)	564
PkrI	GCNGC	6 cut(s)	20, 528, 531, 534, 703, 781
Ple19I	CGATCG	1 cut(s)	400
PleI	GAGTC	4 cut(s)	33, 364, 1077, 1222
PpsI	GAGTC	4 cut(s)	33, 364, 1077, 1222
Ppu21I	YACGTR	1 cut(s)	430
PpuMI	RGGWCCY	1 cut(s)	568
Psp124BI	GAGCTC	1 cut(s)	387
Psp5II	RGGWCCY	1 cut(s)	568
Psp6I	CCWGG	3 cut(s)	30, 363, 978
PspGI	CCWGG	3 cut(s)	30, 363, 978
PspN4I	GGNNCC	5 cut(s)	283, 569, 570, 876, 984
PspOMI	GGGCCC	1 cut(s)	281
PspPI	GGNCC	7 cut(s)	70, 270, 281, 282, 568, 983, 1057
PspPPI	RGGWCCY	1 cut(s)	568
PsuI	RGATCY	2 cut(s)	874, 966
PvuI	CGATCG	1 cut(s)	400
RruI	TCGCGA	1 cut(s)	402
RsaI	GTAC	1 cut(s)	1174
RsaNI	GTAC	1 cut(s)	1173
RseI	CAYNNNNRTG	2 cut(s)	188, 1025
Rsr2I	CGGWCCG	1 cut(s)	270
RsrII	CGGWCCG	1 cut(s)	270
SacI	GAGCTC	1 cut(s)	387
SapI	GCTCTTC	1 cut(s)	152
SaqAI	TTAA	4 cut(s)	86, 222, 834, 1234
SatI	GCNGC	6 cut(s)	19, 527, 530, 533, 702, 780
Sau3AI	GATC	5 cut(s)	397, 868, 874, 966, 973
Sau96I	GGNCC	7 cut(s)	70, 270, 281, 282, 568, 983, 1057
SchI	GAGTC	4 cut(s)	33, 364, 1078, 1223
ScrFI	CCNGG	6 cut(s)	32, 280, 365, 566, 572, 980
SduI	GDGCHC	3 cut(s)	285, 387, 1042
SfaNI	GCATC	1 cut(s)	1098
SfuI	TTCGAA	2 cut(s)	103, 795
SinI	GGWCC	3 cut(s)	270, 568, 1057
SmiMI	CAYNNNNRTG	2 cut(s)	188, 1025
Sse9I	AATT	6 cut(s)	12, 105, 286, 1089, 1209, 1225
SsiI	CCGC	9 cut(s)	268, 299, 374, 460, 527, 530, 587, 701, 704
SstI	GAGCTC	1 cut(s)	387
StyD4I	CCNGG	6 cut(s)	30, 278, 363, 564, 570, 978
StyI	CCWWGG	2 cut(s)	324, 663
TaaI	ACNGT	7 cut(s)	46, 67, 274, 484, 645, 1061, 1179
TaiI	ACGT	3 cut(s)	432, 1034, 1137
TaqI	TCGA	9 cut(s)	48, 103, 239, 396, 680, 795, 849, 972, 1217
TasI	AATT	6 cut(s)	12, 105, 286, 1089, 1209, 1225
TauI	GCSGC	3 cut(s)	529, 532, 704
TfiI	GAWTC	2 cut(s)	550, 1012
Tru1I	TTAA	4 cut(s)	86, 222, 834, 1234
Tru9I	TTAA	4 cut(s)	86, 222, 834, 1234
TscAI	CASTG	1 cut(s)	1032
TseFI	GTSAC	3 cut(s)	355, 739, 1027
TseI	GCWGC	3 cut(s)	18, 532, 779
Tsp45I	GTSAC	3 cut(s)	355, 739, 1027
TspDTI	ATGAA	6 cut(s)	365, 460, 505, 908, 981, 1091
TspGWI	ACGGA	2 cut(s)	557, 1160
TspRI	CASTG	1 cut(s)	1032
VpaK11BI	GGWCC	3 cut(s)	270, 568, 1057
XapI	RAATTY	2 cut(s)	12, 105
XmnI	GAANNNNTTC	1 cut(s)	801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.