AT4G32060

Calcium-binding EF hand family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
15500926 .. 15503593
2668 bp
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UTR
Exon/CDS
Intron
AT4G32060.2

Sequence Viewer

Length: 1497 bp
ATGCCCGCCTTATCTCACTACAGATCAGTATCATCTCTACCGTCCGTTGACCGATCATTCCTTCTCATCCAACGACTCAGGATCCACGGCAGCTCTTCTTCCTTCCCTGAATCTTCTCCTTCTGCGTCTATTCTCTCCGGCGCAGATCCGTTGAAGTGTACGGTCTCTGGTGGATCTCTTGCTAAATGGATCACCGGGATTTCAGCTGGATCCGCCTTAGGGTTTCTCTATTGGTCCTCTGGTTCTTCTGATTCCATCTCTGGTTTGTTTGGTGGGAGTAATTTATTGTCCTTCGCTGATAGTTCAACGCCTTCTGTTTGTGGTGTAAAAGTCGGCGATCTGAAACCGAGATCGTTTATTCCGAAATTGTCGTTGCCTGGTTACAGCTCTGGATTCATCTTCGGAGATGCGTATAGAAGGAAGATCTTCTTCAATTACGAGAAACGTTTGAGATTACAAAGTCCTCCTGAAAAGGTTTTCGAGTACTTTGCATCTGTTCGAACAGATAAAGGAGAAATACTAATGAAACCGGCAGATTTGATGAGGGCAATTGTCCCCGTGTTTCCTCCATCAGAATCTCATCTAGTAAGAGAAGGATATTTGACTGGGGAGAGAAATCCTGGTGAACTTAGATGCTCTCCTTCCGAGTTCTTCATGCTCTTTGATGTTGATAATGATGGTCTTATATCCTTCAAAGAGTATATATTCTTTGTGACATTACTCAGCATTCCTGAATCAAGCTTCGCAGTGGCTTTCAAAATGTTTGATACTGACAACAACGGGGAGATTGACAAAGAAGAGTTTAAGACAGTGATGAGTCTGATGCGATCTCAGCATAGACAAGGAGTTGGCCACAGAGATGGCCTTCGAACAGGGTTACATATGACCGGTTCTGTCGAGGATGGAGGATTGGTAGAATACTTCTTTGGGAAAGATGGCAGTCAAAAACTGAAACACGACAAATTCACTAAGTTTATGAAAGATCTAACTGAAGAGATGCTGAGGCTGGAGTTTGCACATTATGACTATAAACGAAGAGGAAGTATATCGGCCAAAGATTTTGCATTGTCGATGGTTGCAGCGGCTGATGCAAGCCATTTGAGCAAGCTGCTTGATAGAGTTGAGAGTCTGAGCGAACACCCGCATCTCCGGGACATGCGTATCTCACTGAAGGAATTCAAACAGTTTGATGAGCTACGTAGTAAACTTGGACCATTCTCTCTAGCGCTTTTTGCTTATGGCAAAGCTAATGGTTTACTTACAATGAAAGATTTCAAACGAGCCGCCTCTCAGGTATGTGGAATAACATTGTCAGACAATGTGATAGAAATTGCGTTTCATGTGTTTGACTCGAATCAAGATGGGAATTTGAGTGTGGATGAGTTTTTGCGGGTTCTGCATCGAAGAGAGAGGGACGTGGCACAGCCAATTGCAAAAGGATTGTCTCGGTACTTCTCAGATGGATGGAAGGGTTCTAAGAACTGTTCCTCATCGTGA

Protein Analysis

498

Amino Acids

55.41

Weight (kDa)

8.58

Isoelectric Point (pI)

44.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_7 PF13499 217 - 273 2.4e-07 EF-hand domain pair
EF-hand_6 PF13405 250 - 273 1.1e-06 EF-hand domain
EF-hand_1 PF00036 251 - 274 1.7e-07 EF hand domain
EF-hand_5 PF13202 251 - 272 6.5e-07 EF hand
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 6, 213, 1082, 1142, 1284, 1390
AclI AACGTT 1 cut(s) 445
AclWI GGATC 7 cut(s) 76, 89, 140, 181, 197, 204, 217
AcoI YGGCCR 2 cut(s) 850, 1050
AcsI RAATTY 3 cut(s) 962, 1175, 1366
AcuI CTGAAG 2 cut(s) 1011, 1190
AfaI GTAC 3 cut(s) 160, 485, 1451
AfeI AGCGCT 1 cut(s) 1227
AfiI CCNNNNNNNGG 1 cut(s) 219
AgeI ACCGGT 1 cut(s) 887
AgsI TTSAA 7 cut(s) 154, 306, 433, 694, 757, 1180, 1276
AjiI CACGTC 1 cut(s) 1417
AjnI CCWGG 2 cut(s) 376, 619
AjuI GAANNNNNNNTTGG 2 cut(s) 909, 941
AluBI AGCT 7 cut(s) 93, 206, 387, 741, 1108, 1195, 1247
AluI AGCT 7 cut(s) 93, 206, 387, 741, 1108, 1195, 1247
Alw26I GTCTC 2 cut(s) 169, 1449
AlwI GGATC 7 cut(s) 76, 89, 140, 181, 197, 204, 217
AlwNI CAGNNNCTG 1 cut(s) 1085
Aor51HI AGCGCT 1 cut(s) 1227
AoxI GGCC 3 cut(s) 850, 862, 1050
ApeKI GCWGC 3 cut(s) 90, 1079, 1108
ApoI RAATTY 3 cut(s) 962, 1175, 1366
ArsI GACNNNNNNTTYG 2 cut(s) 1427, 1459
AsiGI ACCGGT 1 cut(s) 887
Asp700I GAANNNNTTC 3 cut(s) 425, 1175, 1271
AspLEI GCGC 2 cut(s) 143, 1228
AspS9I GGNCC 2 cut(s) 234, 1211
AsuC2I CCSGG 2 cut(s) 196, 1151
AsuHPI GGTGA 2 cut(s) 184, 635
AsuII TTCGAA 2 cut(s) 499, 868
AvaII GGWCC 2 cut(s) 234, 1211
AxyI CCTNAGG 1 cut(s) 217
BaeI ACNNNNGTAYC 2 cut(s) 1144, 1177
BalI TGGCCA 1 cut(s) 852
BamHI GGATCC 2 cut(s) 81, 209
BbvCI CCTCAGC 1 cut(s) 1001
BbvI GCAGC 3 cut(s) 102, 1091, 1095
BceAI ACGGC 1 cut(s) 103
BcgI CGANNNNNNTGC 2 cut(s) 470, 504
BciT130I CCWGG 2 cut(s) 378, 621
BcnI CCSGG 2 cut(s) 196, 1151
BcoDI GTCTC 2 cut(s) 169, 1449
BfaI CTAG 2 cut(s) 584, 1223
BfmI CTRYAG 1 cut(s) 19
BfoI RGCGCY 1 cut(s) 1229
BglII AGATCT 2 cut(s) 423, 982
BisI GCNGC 5 cut(s) 91, 1080, 1083, 1109, 1284
BlsI GCNGC 5 cut(s) 92, 1081, 1084, 1110, 1285
BmcAI AGTACT 1 cut(s) 485
Bme1390I CCNGG 4 cut(s) 196, 378, 621, 1151
Bme18I GGWCC 2 cut(s) 234, 1211
BmgBI CACGTC 1 cut(s) 1417
BmgT120I GGNCC 2 cut(s) 234, 1211
BmiI GGNNCC 2 cut(s) 83, 211
BmrFI CCNGG 4 cut(s) 196, 378, 621, 1151
BmrI ACTGGG 1 cut(s) 615
BmsI GCATC 8 cut(s) 397, 500, 623, 813, 987, 1078, 1153, 1408
BmuI ACTGGG 1 cut(s) 615
BpmI CTGGAG 1 cut(s) 1028
Bpu10I CCTNAGC 1 cut(s) 1001
Bpu14I TTCGAA 2 cut(s) 499, 868
BpuMI CCSGG 2 cut(s) 196, 1151
BsaAI YACGTR 1 cut(s) 1199
BsaBI GATNNNNATC 1 cut(s) 28
BsaI GGTCTC 1 cut(s) 169
BsaJI CCNNGG 1 cut(s) 85
BsaWI WCCGGW 1 cut(s) 887
BsaXI ACNNNNNCTCC 2 cut(s) 897, 927
Bsc4I CCNNNNNNNGG 1 cut(s) 219
Bse118I RCCGGY 2 cut(s) 529, 887
Bse1I ACTGG 1 cut(s) 610
Bse21I CCTNAGG 1 cut(s) 217
Bse8I GATNNNNATC 1 cut(s) 28
BseBI CCWGG 2 cut(s) 378, 621
BseDI CCNNGG 1 cut(s) 85
BseGI GGATG 4 cut(s) 66, 907, 1384, 1469
BseJI GATNNNNATC 1 cut(s) 28
BseLI CCNNNNNNNGG 1 cut(s) 219
BseMII CTCAG 7 cut(s) 91, 736, 845, 992, 1121, 1304, 1470
BseNI ACTGG 1 cut(s) 610
BseXI GCAGC 3 cut(s) 102, 1091, 1095
BshFI GGCC 3 cut(s) 852, 864, 1052
BshTI ACCGGT 1 cut(s) 887
BsiSI CCGG 5 cut(s) 138, 195, 530, 888, 1150
BslFI GGGAC 3 cut(s) 539, 1166, 1427
BslI CCNNNNNNNGG 1 cut(s) 219
BsmAI GTCTC 2 cut(s) 169, 1449
BsmFI GGGAC 3 cut(s) 539, 1166, 1427
BsmI GAATGC 1 cut(s) 726
BsnI GGCC 3 cut(s) 852, 864, 1052
Bso31I GGTCTC 1 cut(s) 169
Bsp119I TTCGAA 2 cut(s) 499, 868
BspACI CCGC 6 cut(s) 6, 213, 1082, 1142, 1284, 1390
BspANI GGCC 3 cut(s) 852, 864, 1052
BspCNI CTCAG 7 cut(s) 90, 735, 844, 993, 1122, 1303, 1469
BspLI GGNNCC 2 cut(s) 83, 211
BspPI GGATC 7 cut(s) 76, 89, 140, 181, 197, 204, 217
BspQI GCTCTTC 1 cut(s) 100
BspT104I TTCGAA 2 cut(s) 499, 868
BspTNI GGTCTC 1 cut(s) 169
BsrFI RCCGGY 2 cut(s) 529, 887
BsrI ACTGG 1 cut(s) 610
BssAI RCCGGY 2 cut(s) 529, 887
BssECI CCNNGG 1 cut(s) 85
Bst2UI CCWGG 2 cut(s) 378, 621
Bst4CI ACNGT 5 cut(s) 42, 163, 811, 1185, 1484
Bst6I CTCTTC 5 cut(s) 100, 792, 987, 1030, 1399
BstBAI YACGTR 1 cut(s) 1199
BstBI TTCGAA 2 cut(s) 499, 868
BstC8I GCNNGC 3 cut(s) 6, 1093, 1106
BstDSI CCRYGG 1 cut(s) 85
BstF5I GGATG 4 cut(s) 66, 907, 1384, 1469
BstH2I RGCGCY 1 cut(s) 1229
BstHHI GCGC 2 cut(s) 143, 1228
BstMAI GTCTC 2 cut(s) 169, 1449
BstMWI GCNNNNNNNGC 6 cut(s) 212, 832, 1088, 1101, 1232, 1396
BstNI CCWGG 2 cut(s) 378, 621
BstNSI RCATGY 1 cut(s) 1159
BstSCI CCNGG 4 cut(s) 194, 376, 619, 1149
BstSFI CTRYAG 1 cut(s) 19
BstSNI TACGTA 1 cut(s) 1199
BstV1I GCAGC 3 cut(s) 102, 1091, 1095
BstX2I RGATCY 6 cut(s) 81, 145, 173, 209, 423, 982
BstXI CCANNNNNNTGG 1 cut(s) 860
BstYI RGATCY 6 cut(s) 81, 145, 173, 209, 423, 982
Bsu36I CCTNAGG 1 cut(s) 217
BsuRI GGCC 3 cut(s) 852, 864, 1052
BtgI CCRYGG 1 cut(s) 85
BtrI CACGTC 1 cut(s) 1417
BtsCI GGATG 4 cut(s) 66, 907, 1384, 1469
BtsI GCAGTG 1 cut(s) 753
BtsIMutI CAGTG 3 cut(s) 753, 816, 1166
Cac8I GCNNGC 3 cut(s) 6, 1093, 1106
CaiI CAGNNNCTG 1 cut(s) 1085
CfoI GCGC 2 cut(s) 143, 1228
Cfr10I RCCGGY 2 cut(s) 529, 887
Cfr13I GGNCC 2 cut(s) 234, 1211
CseI GACGC 1 cut(s) 114
Csp6I GTAC 3 cut(s) 159, 484, 1450
CspAI ACCGGT 1 cut(s) 887
CviAII CATG 3 cut(s) 655, 1156, 1340
CviQI GTAC 3 cut(s) 159, 484, 1450
EaeI YGGCCR 2 cut(s) 850, 1050
Eam1104I CTCTTC 5 cut(s) 100, 792, 987, 1030, 1399
EarI CTCTTC 5 cut(s) 100, 792, 987, 1030, 1399
EciI GGCGGA 1 cut(s) 202
Eco105I TACGTA 1 cut(s) 1199
Eco31I GGTCTC 1 cut(s) 169
Eco47I GGWCC 2 cut(s) 234, 1211
Eco47III AGCGCT 1 cut(s) 1227
Eco57I CTGAAG 2 cut(s) 1011, 1190
Eco81I CCTNAGG 1 cut(s) 217
EcoRI GAATTC 1 cut(s) 1175
EcoRII CCWGG 2 cut(s) 376, 619
FaeI CATG 3 cut(s) 658, 1159, 1343
FalI AAGNNNNNCTT 2 cut(s) 413, 445
FaqI GGGAC 3 cut(s) 539, 1166, 1427
FatI CATG 3 cut(s) 654, 1155, 1339
FauI CCCGC 3 cut(s) 13, 1149, 1383
FauNDI CATATG 1 cut(s) 882
Fnu4HI GCNGC 5 cut(s) 91, 1080, 1083, 1109, 1284
FokI GGATG 4 cut(s) 53, 914, 1391, 1476
Fsp4HI GCNGC 5 cut(s) 91, 1080, 1083, 1109, 1284
FspBI CTAG 2 cut(s) 584, 1223
GlaI GCGC 2 cut(s) 142, 1227
GluI GCNGC 5 cut(s) 91, 1080, 1083, 1109, 1284
GsuI CTGGAG 1 cut(s) 1028
HaeII RGCGCY 1 cut(s) 1229
HaeIII GGCC 3 cut(s) 852, 864, 1052
HapII CCGG 5 cut(s) 138, 195, 530, 888, 1150
HgaI GACGC 1 cut(s) 114
HhaI GCGC 2 cut(s) 143, 1228
Hin1II CATG 3 cut(s) 658, 1159, 1343
Hin6I GCGC 2 cut(s) 141, 1226
HinP1I GCGC 2 cut(s) 141, 1226
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HindIII AAGCTT 1 cut(s) 739
HpaII CCGG 5 cut(s) 138, 195, 530, 888, 1150
HphI GGTGA 2 cut(s) 184, 635
Hpy166II GTNNAC 5 cut(s) 49, 159, 626, 1205, 1256
Hpy188III TCNNGA 6 cut(s) 79, 390, 467, 731, 1358, 1494
Hpy8I GTNNAC 5 cut(s) 49, 159, 626, 1205, 1256
HpyCH4III ACNGT 5 cut(s) 42, 163, 811, 1185, 1484
HpyCH4IV ACGT 3 cut(s) 445, 1198, 1416
HpyCH4V TGCA 7 cut(s) 491, 1016, 1064, 1079, 1091, 1399, 1433
HpyF10VI GCNNNNNNNGC 6 cut(s) 212, 832, 1088, 1101, 1232, 1396
HpySE526I ACGT 3 cut(s) 445, 1198, 1416
Hsp92II CATG 3 cut(s) 658, 1159, 1343
HspAI GCGC 2 cut(s) 141, 1226
LguI GCTCTTC 1 cut(s) 100
Lsp1109I GCAGC 3 cut(s) 102, 1091, 1095
LweI GCATC 8 cut(s) 397, 500, 623, 813, 987, 1078, 1153, 1408
MaeI CTAG 2 cut(s) 584, 1223
MaeII ACGT 3 cut(s) 445, 1198, 1416
MaeIII GTNAC 3 cut(s) 380, 712, 876
MfeI CAATTG 2 cut(s) 549, 1428
MflI RGATCY 6 cut(s) 81, 145, 173, 209, 423, 982
MlsI TGGCCA 1 cut(s) 852
MluCI AATT 9 cut(s) 280, 365, 433, 549, 962, 1175, 1329, 1366, 1428
MluNI TGGCCA 1 cut(s) 852
MlyI GAGTC 4 cut(s) 69, 826, 1135, 1343
MmeI TCCRAC 1 cut(s) 94
Mox20I TGGCCA 1 cut(s) 852
MroXI GAANNNNTTC 3 cut(s) 425, 1175, 1271
MscI TGGCCA 1 cut(s) 852
MseI TTAA 1 cut(s) 804
MslI CAYNNNNRTG 1 cut(s) 858
Msp20I TGGCCA 1 cut(s) 852
MspA1I CMGCKG 2 cut(s) 206, 1082
MspI CCGG 5 cut(s) 138, 195, 530, 888, 1150
MspR9I CCNGG 4 cut(s) 196, 378, 621, 1151
MunI CAATTG 2 cut(s) 549, 1428
Mva1269I GAATGC 1 cut(s) 726
MvaI CCWGG 2 cut(s) 378, 621
MwoI GCNNNNNNNGC 6 cut(s) 212, 832, 1088, 1101, 1232, 1396
NciI CCSGG 2 cut(s) 196, 1151
NdeI CATATG 1 cut(s) 882
NlaIII CATG 3 cut(s) 658, 1159, 1343
NlaIV GGNNCC 2 cut(s) 83, 211
NmuCI GTSAC 1 cut(s) 712
NspI RCATGY 1 cut(s) 1159
NspV TTCGAA 2 cut(s) 499, 868
PciSI GCTCTTC 1 cut(s) 100
PcsI WCGNNNNNNNCGW 1 cut(s) 359
PctI GAATGC 1 cut(s) 726
PdmI GAANNNNTTC 3 cut(s) 425, 1175, 1271
PfeI GAWTC 6 cut(s) 110, 251, 393, 575, 734, 1354
PfoI TCCNGGA 1 cut(s) 1149
PinAI ACCGGT 1 cut(s) 887
PkrI GCNGC 5 cut(s) 92, 1081, 1084, 1110, 1285
PleI GAGTC 4 cut(s) 69, 825, 1134, 1343
PpsI GAGTC 4 cut(s) 69, 825, 1134, 1343
Ppu21I YACGTR 1 cut(s) 1199
Psp1406I AACGTT 1 cut(s) 445
Psp6I CCWGG 2 cut(s) 376, 619
PspGI CCWGG 2 cut(s) 376, 619
PspN4I GGNNCC 2 cut(s) 83, 211
PspPI GGNCC 2 cut(s) 234, 1211
PstNI CAGNNNCTG 1 cut(s) 1085
PsuI RGATCY 6 cut(s) 81, 145, 173, 209, 423, 982
PvuII CAGCTG 1 cut(s) 206
RsaI GTAC 3 cut(s) 160, 485, 1451
RsaNI GTAC 3 cut(s) 159, 484, 1450
RseI CAYNNNNRTG 1 cut(s) 858
SapI GCTCTTC 1 cut(s) 100
SaqAI TTAA 1 cut(s) 804
SatI GCNGC 5 cut(s) 91, 1080, 1083, 1109, 1284
Sau96I GGNCC 2 cut(s) 234, 1211
ScaI AGTACT 1 cut(s) 485
SchI GAGTC 4 cut(s) 69, 826, 1135, 1343
ScrFI CCNGG 4 cut(s) 196, 378, 621, 1151
SfaNI GCATC 8 cut(s) 397, 500, 623, 813, 987, 1078, 1153, 1408
SfcI CTRYAG 1 cut(s) 19
SfuI TTCGAA 2 cut(s) 499, 868
SinI GGWCC 2 cut(s) 234, 1211
SmiMI CAYNNNNRTG 1 cut(s) 858
SnaBI TACGTA 1 cut(s) 1199
Sse9I AATT 9 cut(s) 280, 365, 433, 549, 962, 1175, 1329, 1366, 1428
SsiI CCGC 6 cut(s) 6, 213, 1082, 1142, 1284, 1390
SspMI CTAG 2 cut(s) 584, 1223
StyD4I CCNGG 4 cut(s) 194, 376, 619, 1149
TaaI ACNGT 5 cut(s) 42, 163, 811, 1185, 1484
TaiI ACGT 3 cut(s) 448, 1201, 1419
TaqI TCGA 7 cut(s) 480, 499, 868, 897, 1070, 1352, 1402
TaqII GACCGA 1 cut(s) 66
TasI AATT 9 cut(s) 280, 365, 433, 549, 962, 1175, 1329, 1366, 1428
TatI WGTACW 1 cut(s) 483
TauI GCSGC 2 cut(s) 1085, 1286
TfiI GAWTC 6 cut(s) 110, 251, 393, 575, 734, 1354
Tru1I TTAA 1 cut(s) 804
Tru9I TTAA 1 cut(s) 804
TscAI CASTG 3 cut(s) 753, 816, 1173
TseFI GTSAC 1 cut(s) 712
TseI GCWGC 3 cut(s) 90, 1079, 1108
Tsp45I GTSAC 1 cut(s) 712
TspDTI ATGAA 6 cut(s) 385, 539, 643, 992, 1280, 1328
TspGWI ACGGA 2 cut(s) 34, 138
TspRI CASTG 3 cut(s) 753, 816, 1173
VpaK11BI GGWCC 2 cut(s) 234, 1211
XapI RAATTY 3 cut(s) 962, 1175, 1366
XceI RCATGY 1 cut(s) 1159
XmnI GAANNNNTTC 3 cut(s) 425, 1175, 1271
XspI CTAG 2 cut(s) 584, 1223
ZrmI AGTACT 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.