Rw6G033310

Calcium uptake protein 1

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
57793804 .. 57797449
3646 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G033310.1

Sequence Viewer

Length: 1242 bp
ATGTCCCTCAGACGATCCGCACCGTCGATCTACCAACGGCTCCAGATCTCCCAGCTGTCCACAGCCCCACAGCCATCTTCGCCGCTCTCTCTGATCAGCAGCGTCTCGGGCTTTAGCTCTAACCCTCACGAAAACCCCCCAAACTCGTACCTCAAATGGATCTCGGGCATCGCGGTCGGGTCGGGCCTAGGGTTGCTCTACTGGTCTAATCCCGATTCCGATTTCTTCAAGAAGTCGTCGCTGGCTTTCGCTGACTGGTCAACCGGTTTGGAGGGCCGGCCGACGCGTTCTTTGCTGCAGAAATTATCTTTACCTGAAATTAGGGCCAAGTTTCTCTTTGGAGATGCCTATAGGAGAAGGATTTTCTTCAACTATGAGAAGCGCATGAGGTTGCGGAGTCCGCCTGAGAAGGTGTTCGAGTACTTTGCATCTTCGTGTACAGCAGAGGGAGAATTACTTATGAGACCAGAAGATCTCATGAGGGCAGTGGTTCCTGTTTTCCCTCCATCTGAATCCAACCTTGTTAGAGACGGGTATTTGAGAGGTGAAAGGAATCCTGGCGAGTTGCGCTGTTCGCCCTCAAGTTTTTTCATGCTTTTTGATGTAAACAGTGACGGATATATTTCCTTCAAAGAGTATATTTTCTTTGTAACACTACTAAGCATTCCAGAGTCCAGTTTCTATGTGACTTTCAAAATGTTTGACACTGACGATAGTGGAGAAATTGACAAGGAAGAATTCAAAAAAGTGATGGCATTGATGCGAGCCTGCAACAGACAGGGTGCTCAACACAGGGGTGGACTTCGATCTGGACTAAAAGTTAGGGGTTCTGTAGAAAACGGAGGGCTTGTGGAGTTCTTTTTTGGTGAAGATGGGAATGCTCGCCTTCAACTTGATAAATTTGTCAAGTTTTTGAGAGATTTGCACAATGAAATGCTGAGGTTGGAGTTTTCCCACTACGACTATAAAAAGCGAGGAACCATGGTGGCAAAGGATTTTGCATTATCCATGGTTGCATCCGCCGACATGCGTCATTTAAGCAGTTTGCTTGATCGGGTTGATAAATTGGACCATGTACCAGATCTTAGAGACACTCAGATCTCATTCGAGGAGTTCAAAAACTTTGCAGAGCTTCGCAAAAAATTGCAGCCATTTGCTTTGGCCCTTTTCAGCTACGGTAAAGCAAATGGCATGTTAACACGGGAGGATTTCAAACGAGCTGCATTTCTTGTAAGATACTAG

Protein Analysis

413

Amino Acids

47.25

Weight (kDa)

9.19

Isoelectric Point (pI)

48.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_7 PF13499 196 - 251 1.7e-07 EF-hand domain pair
EF-hand_6 PF13405 228 - 252 7.1e-06 EF-hand domain
EF-hand_5 PF13202 230 - 251 1.3e-06 EF hand
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 85
AccII CGCG 2 cut(s) 173, 286
AciI CCGC 6 cut(s) 18, 83, 173, 394, 401, 1020
AclWI GGATC 2 cut(s) 9, 167
AcoI YGGCCR 1 cut(s) 278
AcsI RAATTY 2 cut(s) 737, 899
AfaI GTAC 4 cut(s) 149, 422, 439, 1077
AflIII ACRYGT 1 cut(s) 284
AgeI ACCGGT 1 cut(s) 263
AgsI TTSAA 8 cut(s) 229, 370, 631, 694, 742, 890, 1117, 1213
AjnI CCWGG 1 cut(s) 556
AleI CACNNNNGTG 1 cut(s) 795
AluBI AGCT 5 cut(s) 55, 117, 1132, 1173, 1220
AluI AGCT 5 cut(s) 55, 117, 1132, 1173, 1220
Alw21I GWGCWC 1 cut(s) 787
Alw26I GTCTC 4 cut(s) 109, 457, 522, 1083
AlwI GGATC 2 cut(s) 9, 167
Ama87I CYCGRG 2 cut(s) 106, 163
AoxI GGCC 5 cut(s) 184, 274, 278, 324, 1161
ApeKI GCWGC 4 cut(s) 99, 295, 1147, 1220
ApoI RAATTY 2 cut(s) 737, 899
ArsI GACNNNNNNTTYG 2 cut(s) 274, 306
AsiGI ACCGGT 1 cut(s) 263
Asp700I GAANNNNTTC 1 cut(s) 413
AspA2I CCTAGG 1 cut(s) 187
AspLEI GCGC 2 cut(s) 384, 570
AspS9I GGNCC 5 cut(s) 184, 274, 324, 1069, 1162
AsuHPI GGTGA 2 cut(s) 557, 878
AvaI CYCGRG 2 cut(s) 106, 163
AvaII GGWCC 1 cut(s) 1069
AvrII CCTAGG 1 cut(s) 187
Bbv12I GWGCWC 1 cut(s) 787
BbvCI CCTCAGC 1 cut(s) 938
BbvI GCAGC 4 cut(s) 111, 282, 1159, 1207
BccI CCATC 4 cut(s) 82, 514, 745, 866
BceAI ACGGC 1 cut(s) 53
BcgI CGANNNNNNTGC 4 cut(s) 157, 191, 407, 441
BciT130I CCWGG 1 cut(s) 558
BclI TGATCA 1 cut(s) 93
BcoDI GTCTC 4 cut(s) 109, 457, 522, 1083
BfaI CTAG 2 cut(s) 188, 1240
BfmI CTRYAG 3 cut(s) 296, 349, 831
BglII AGATCT 4 cut(s) 45, 472, 1081, 1098
BisI GCNGC 5 cut(s) 83, 100, 296, 1148, 1221
BlnI CCTAGG 1 cut(s) 187
BlsI GCNGC 5 cut(s) 84, 101, 297, 1149, 1222
BmcAI AGTACT 1 cut(s) 422
Bme1390I CCNGG 1 cut(s) 558
Bme18I GGWCC 1 cut(s) 1069
BmeT110I CYCGRG 2 cut(s) 106, 163
BmgT120I GGNCC 5 cut(s) 184, 274, 324, 1069, 1162
BmiI GGNNCC 3 cut(s) 41, 492, 979
BmrFI CCNGG 1 cut(s) 558
BmsI GCATC 5 cut(s) 177, 334, 437, 750, 1025
BoxI GACNNNNGTC 1 cut(s) 1029
BpmI CTGGAG 1 cut(s) 26
Bpu10I CCTNAGC 1 cut(s) 938
BpuEI CTTGAG 1 cut(s) 565
BsaI GGTCTC 1 cut(s) 457
BsaJI CCNNGG 3 cut(s) 187, 981, 1008
BsaWI WCCGGW 1 cut(s) 263
BsaXI ACNNNNNCTCC 2 cut(s) 834, 864
Bse118I RCCGGY 2 cut(s) 263, 276
Bse1I ACTGG 3 cut(s) 206, 260, 675
BseBI CCWGG 1 cut(s) 558
BseDI CCNNGG 3 cut(s) 187, 981, 1008
BseGI GGATG 1 cut(s) 1016
BseMII CTCAG 4 cut(s) 22, 396, 929, 1109
BseNI ACTGG 3 cut(s) 206, 260, 675
BseRI GAGGAG 1 cut(s) 1124
BseX3I CGGCCG 1 cut(s) 278
BseXI GCAGC 4 cut(s) 111, 282, 1159, 1207
BseYI CCCAGC 1 cut(s) 51
Bsh1236I CGCG 2 cut(s) 173, 286
Bsh1285I CGRYCG 2 cut(s) 177, 281
BshFI GGCC 5 cut(s) 186, 276, 280, 326, 1163
BshTI ACCGGT 1 cut(s) 263
BsiEI CGRYCG 2 cut(s) 177, 281
BsiHKAI GWGCWC 1 cut(s) 787
BsiHKCI CYCGRG 2 cut(s) 106, 163
BsiSI CCGG 2 cut(s) 264, 277
BsmAI GTCTC 4 cut(s) 109, 457, 522, 1083
BsmBI CGTCTC 2 cut(s) 109, 522
BsmI GAATGC 2 cut(s) 663, 883
BsnI GGCC 5 cut(s) 186, 276, 280, 326, 1163
Bso31I GGTCTC 1 cut(s) 457
BsoBI CYCGRG 2 cut(s) 106, 163
Bsp1286I GDGCHC 1 cut(s) 787
Bsp1407I TGTACA 1 cut(s) 437
Bsp19I CCATGG 2 cut(s) 981, 1008
BspACI CCGC 6 cut(s) 18, 83, 173, 394, 401, 1020
BspANI GGCC 5 cut(s) 186, 276, 280, 326, 1163
BspCNI CTCAG 4 cut(s) 21, 397, 930, 1108
BspFNI CGCG 2 cut(s) 173, 286
BspHI TCATGA 1 cut(s) 477
BspLI GGNNCC 3 cut(s) 41, 492, 979
BspMAI CTGCAG 1 cut(s) 300
BspPI GGATC 2 cut(s) 9, 167
BspTNI GGTCTC 1 cut(s) 457
BsrBI CCGCTC 1 cut(s) 85
BsrFI RCCGGY 2 cut(s) 263, 276
BsrGI TGTACA 1 cut(s) 437
BsrI ACTGG 3 cut(s) 206, 260, 675
BssAI RCCGGY 2 cut(s) 263, 276
BssECI CCNNGG 3 cut(s) 187, 981, 1008
BssT1I CCWWGG 3 cut(s) 187, 981, 1008
Bst2UI CCWGG 1 cut(s) 558
Bst4CI ACNGT 3 cut(s) 24, 611, 1178
BstAUI TGTACA 1 cut(s) 437
BstC8I GCNNGC 5 cut(s) 243, 278, 765, 769, 883
BstDEI CTNAG 6 cut(s) 8, 405, 659, 938, 1085, 1095
BstDSI CCRYGG 2 cut(s) 981, 1008
BstF5I GGATG 1 cut(s) 1016
BstFNI CGCG 2 cut(s) 173, 286
BstHHI GCGC 2 cut(s) 384, 570
BstMAI GTCTC 4 cut(s) 109, 457, 522, 1083
BstMCI CGRYCG 2 cut(s) 177, 281
BstMWI GCNNNNNNNGC 6 cut(s) 79, 108, 292, 400, 567, 574
BstNI CCWGG 1 cut(s) 558
BstNSI RCATGY 2 cut(s) 1030, 1195
BstPAI GACNNNNGTC 1 cut(s) 1029
BstSCI CCNGG 1 cut(s) 556
BstSFI CTRYAG 3 cut(s) 296, 349, 831
BstUI CGCG 2 cut(s) 173, 286
BstV1I GCAGC 4 cut(s) 111, 282, 1159, 1207
BstX2I RGATCY 5 cut(s) 45, 159, 472, 1081, 1098
BstYI RGATCY 5 cut(s) 45, 159, 472, 1081, 1098
BstZI CGGCCG 1 cut(s) 278
BsuRI GGCC 5 cut(s) 186, 276, 280, 326, 1163
BtgI CCRYGG 2 cut(s) 981, 1008
BtgZI GCGATG 1 cut(s) 154
BtsCI GGATG 1 cut(s) 1016
BtsI GCAGTG 1 cut(s) 492
BtsIMutI CAGTG 3 cut(s) 492, 616, 705
Cac8I GCNNGC 5 cut(s) 243, 278, 765, 769, 883
CciI TCATGA 1 cut(s) 477
CfoI GCGC 2 cut(s) 384, 570
Cfr10I RCCGGY 2 cut(s) 263, 276
Cfr13I GGNCC 5 cut(s) 184, 274, 324, 1069, 1162
CseI GACGC 3 cut(s) 91, 292, 1019
Csp6I GTAC 4 cut(s) 148, 421, 438, 1076
CspAI ACCGGT 1 cut(s) 263
CviAII CATG 8 cut(s) 385, 478, 592, 982, 1009, 1027, 1073, 1192
CviQI GTAC 4 cut(s) 148, 421, 438, 1076
DdeI CTNAG 6 cut(s) 8, 405, 659, 938, 1085, 1095
EaeI YGGCCR 1 cut(s) 278
EagI CGGCCG 1 cut(s) 278
EciI GGCGGA 2 cut(s) 390, 1009
EclXI CGGCCG 1 cut(s) 278
Eco130I CCWWGG 3 cut(s) 187, 981, 1008
Eco31I GGTCTC 1 cut(s) 457
Eco47I GGWCC 1 cut(s) 1069
Eco52I CGGCCG 1 cut(s) 278
Eco88I CYCGRG 2 cut(s) 106, 163
EcoRI GAATTC 1 cut(s) 737
EcoRII CCWGG 1 cut(s) 556
EcoT14I CCWWGG 3 cut(s) 187, 981, 1008
ErhI CCWWGG 3 cut(s) 187, 981, 1008
Esp3I CGTCTC 2 cut(s) 109, 522
FaeI CATG 8 cut(s) 388, 481, 595, 985, 1012, 1030, 1076, 1195
FalI AAGNNNNNCTT 2 cut(s) 320, 352
FatI CATG 8 cut(s) 384, 477, 591, 981, 1008, 1026, 1072, 1191
FbaI TGATCA 1 cut(s) 93
Fnu4HI GCNGC 5 cut(s) 83, 100, 296, 1148, 1221
FokI GGATG 1 cut(s) 1003
FseI GGCCGGCC 1 cut(s) 280
Fsp4HI GCNGC 5 cut(s) 83, 100, 296, 1148, 1221
FspBI CTAG 2 cut(s) 188, 1240
GlaI GCGC 2 cut(s) 383, 569
GluI GCNGC 5 cut(s) 83, 100, 296, 1148, 1221
GsaI CCCAGC 1 cut(s) 55
GsuI CTGGAG 1 cut(s) 26
HaeIII GGCC 5 cut(s) 186, 276, 280, 326, 1163
HapII CCGG 2 cut(s) 264, 277
HgaI GACGC 3 cut(s) 91, 292, 1019
HhaI GCGC 2 cut(s) 384, 570
Hin1II CATG 8 cut(s) 388, 481, 595, 985, 1012, 1030, 1076, 1195
Hin6I GCGC 2 cut(s) 382, 568
HinP1I GCGC 2 cut(s) 382, 568
HincII GTYRAC 2 cut(s) 261, 1197
HindII GTYRAC 2 cut(s) 261, 1197
HinfI GANTC 5 cut(s) 215, 397, 512, 553, 671
HpaI GTTAAC 1 cut(s) 1197
HpaII CCGG 2 cut(s) 264, 277
HphI GGTGA 2 cut(s) 557, 878
Hpy166II GTNNAC 6 cut(s) 60, 261, 438, 607, 800, 1197
Hpy188I TCNGA 5 cut(s) 11, 93, 220, 511, 1098
Hpy188III TCNNGA 7 cut(s) 43, 128, 212, 229, 478, 668, 810
Hpy8I GTNNAC 6 cut(s) 60, 261, 438, 607, 800, 1197
Hpy99I CGWCG 3 cut(s) 28, 241, 286
HpyAV CCTTC 4 cut(s) 351, 403, 637, 896
HpyCH4III ACNGT 3 cut(s) 24, 611, 1178
HpyCH4V TGCA 9 cut(s) 298, 428, 771, 925, 1001, 1016, 1127, 1147, 1223
HpyF10VI GCNNNNNNNGC 6 cut(s) 79, 108, 292, 400, 567, 574
HpyF3I CTNAG 6 cut(s) 8, 405, 659, 938, 1085, 1095
Hsp92II CATG 8 cut(s) 388, 481, 595, 985, 1012, 1030, 1076, 1195
HspAI GCGC 2 cut(s) 382, 568
KroI GCCGGC 1 cut(s) 276
KroNI GCCGGC 1 cut(s) 278
Ksp22I TGATCA 1 cut(s) 93
KspAI GTTAAC 1 cut(s) 1197
LmnI GCTCC 1 cut(s) 45
Lsp1109I GCAGC 4 cut(s) 111, 282, 1159, 1207
LweI GCATC 5 cut(s) 177, 334, 437, 750, 1025
MaeI CTAG 2 cut(s) 188, 1240
MaeIII GTNAC 3 cut(s) 611, 649, 685
MbiI CCGCTC 1 cut(s) 85
MboII GAAGA 7 cut(s) 69, 217, 358, 423, 482, 746, 881
MflI RGATCY 5 cut(s) 45, 159, 472, 1081, 1098
MhlI GDGCHC 1 cut(s) 787
MluCI AATT 8 cut(s) 302, 318, 452, 723, 737, 899, 1064, 1142
MluI ACGCGT 1 cut(s) 284
MlyI GAGTC 2 cut(s) 406, 680
MmeI TCCRAC 2 cut(s) 540, 924
MroNI GCCGGC 1 cut(s) 276
MroXI GAANNNNTTC 1 cut(s) 413
MseI TTAA 2 cut(s) 1037, 1196
MslI CAYNNNNRTG 2 cut(s) 433, 795
MspA1I CMGCKG 1 cut(s) 55
MspI CCGG 2 cut(s) 264, 277
MspR9I CCNGG 1 cut(s) 558
Mva1269I GAATGC 2 cut(s) 663, 883
MvaI CCWGG 1 cut(s) 558
MvnI CGCG 2 cut(s) 173, 286
MwoI GCNNNNNNNGC 6 cut(s) 79, 108, 292, 400, 567, 574
NaeI GCCGGC 1 cut(s) 278
NcoI CCATGG 2 cut(s) 981, 1008
NgoMIV GCCGGC 1 cut(s) 276
NlaIII CATG 8 cut(s) 388, 481, 595, 985, 1012, 1030, 1076, 1195
NlaIV GGNNCC 3 cut(s) 41, 492, 979
NmuCI GTSAC 2 cut(s) 611, 685
NspI RCATGY 2 cut(s) 1030, 1195
OliI CACNNNNGTG 1 cut(s) 795
PagI TCATGA 1 cut(s) 477
PctI GAATGC 2 cut(s) 663, 883
PdiI GCCGGC 1 cut(s) 278
PdmI GAANNNNTTC 1 cut(s) 413
PfeI GAWTC 3 cut(s) 215, 512, 553
PinAI ACCGGT 1 cut(s) 263
PkrI GCNGC 5 cut(s) 84, 101, 297, 1149, 1222
PleI GAGTC 2 cut(s) 405, 679
PpsI GAGTC 2 cut(s) 405, 679
PshAI GACNNNNGTC 1 cut(s) 1029
Psp6I CCWGG 1 cut(s) 556
PspFI CCCAGC 1 cut(s) 51
PspGI CCWGG 1 cut(s) 556
PspN4I GGNNCC 3 cut(s) 41, 492, 979
PspPI GGNCC 5 cut(s) 184, 274, 324, 1069, 1162
PstI CTGCAG 1 cut(s) 300
PsuI RGATCY 5 cut(s) 45, 159, 472, 1081, 1098
PvuII CAGCTG 1 cut(s) 55
RigI GGCCGGCC 1 cut(s) 280
RsaI GTAC 4 cut(s) 149, 422, 439, 1077
RsaNI GTAC 4 cut(s) 148, 421, 438, 1076
RseI CAYNNNNRTG 2 cut(s) 433, 795
SaqAI TTAA 2 cut(s) 1037, 1196
SatI GCNGC 5 cut(s) 83, 100, 296, 1148, 1221
Sau96I GGNCC 5 cut(s) 184, 274, 324, 1069, 1162
ScaI AGTACT 1 cut(s) 422
SchI GAGTC 2 cut(s) 406, 680
ScrFI CCNGG 1 cut(s) 558
SduI GDGCHC 1 cut(s) 787
SfaNI GCATC 5 cut(s) 177, 334, 437, 750, 1025
SfcI CTRYAG 3 cut(s) 296, 349, 831
SinI GGWCC 1 cut(s) 1069
SmiMI CAYNNNNRTG 2 cut(s) 433, 795
SmlI CTYRAG 1 cut(s) 580
SmoI CTYRAG 1 cut(s) 580
Sse9I AATT 8 cut(s) 302, 318, 452, 723, 737, 899, 1064, 1142
SsiI CCGC 6 cut(s) 18, 83, 173, 394, 401, 1020
SspMI CTAG 2 cut(s) 188, 1240
StyD4I CCNGG 1 cut(s) 556
StyI CCWWGG 3 cut(s) 187, 981, 1008
TaaI ACNGT 3 cut(s) 24, 611, 1178
TaqI TCGA 4 cut(s) 26, 417, 805, 1107
TasI AATT 8 cut(s) 302, 318, 452, 723, 737, 899, 1064, 1142
TatI WGTACW 2 cut(s) 420, 437
TauI GCSGC 1 cut(s) 85
TfiI GAWTC 3 cut(s) 215, 512, 553
Tru1I TTAA 2 cut(s) 1037, 1196
Tru9I TTAA 2 cut(s) 1037, 1196
TscAI CASTG 3 cut(s) 492, 616, 712
TseFI GTSAC 2 cut(s) 611, 685
TseI GCWGC 4 cut(s) 99, 295, 1147, 1220
Tsp45I GTSAC 2 cut(s) 611, 685
TspDTI ATGAA 2 cut(s) 580, 945
TspGWI ACGGA 2 cut(s) 630, 855
TspRI CASTG 3 cut(s) 492, 616, 712
VpaK11BI GGWCC 1 cut(s) 1069
XapI RAATTY 2 cut(s) 737, 899
XceI RCATGY 2 cut(s) 1030, 1195
XmaJI CCTAGG 1 cut(s) 187
XmnI GAANNNNTTC 1 cut(s) 413
XspI CTAG 2 cut(s) 188, 1240
ZrmI AGTACT 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.