Rroxscaffold_7G00170610

Calcium uptake protein 1

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
11011235 .. 11015218
3984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00170610.1

Sequence Viewer

Length: 1320 bp
ATGTCCATCAGACGATCCGCACCGTCGATCTACCAACGGCTCCAGATCTCCCAGCTGTCCACAGCCTCACAGCCTTCTTCCCCTTCTTCGCCGCTCTCTCTGATCAGCAGCGTCTCGGGCTTTAGCTCTAACCCTCACGAAAACCCCCAAAACTCGTACCTCAAATGGATCTCGGGCATCGCGGTTGGGTCGGGCCTAGGGTTGCTCTACTGGTCTAATCCCGATTCCGGTTTCTTCAAGAAGTCGTCGCTGGCTTTCGCTGACTGGTCAACCGGTTTGGAGGGCCGGCCGACGCGTTCTTTGCTGCAGAAATTATCTTTACCTGAAATTAGGGCCAAGTTTCTCTTTGGAGATGCCTATAGGAGAAGGATTTTCTTCAACTATGAGAAGCGCATGAGGTTGCGGAGTCCGCCTGAGAAGGTGTTCGAGTACTTTGCATCTTCCTGTACAGCAGATGGAGAATTACTTATGAGACCAGAAGATCTCATGAGGGCAGTGGTTCCTGTTTTTCCTCCATCTGAATCCAACCTTGTTAGAGACGGGTATTTGAGAGGTGAAAGGAATCCTGGCGAGTTGCGCTGTTCGCCCTCAAGTTTTTTCATGCTTTTTGATGTAAACAGTGACGGATATATTTCCTTCAAAGAAGAAATTGACAAGGAAGAATTCAAAAAAGTGATGGCATTGATGCGAGCCTGCAACAGACAGGGTGCTCAACACAGGGGTGGACTTCGATCTGGACTAAAAGTTAGGGGTTCTGTAGAAAACGGAGGGCTTGTGGAGTTCTTTTTTGGTGAAGATGGGAATTCTCGCCTTCAACTTGATAAATTTGTCAAGTTTTTGAGAGATTTACACAATGAAATGCTGAGGTTGGAGTTTTCCCACTACGACTATAAAAAGCGAGGAACCATGGTGGCAAAGGATTTTGCATTATCCATGGTTGCATCCGCTGACATGCGTCATTTAAGCAGTTTGCTTGATCGGGTTGATAAATTGGACAATGTACCAGATCTTAGAGACACTCAGATCTCATTCGAGGAGTTCAAAAACTTTGCTGAGCTTCGCAAAAAATTGCAGCCATTTGCTTTGGCCCTTTTCAGCTACGGTAAAGCAAATGGCATGTTAACACGGGATGATTTCAAGCGAGCTGCATGTCATGTGTGTGGCATAGCTCTCAGCGACGATGTGGTTGAAATCATCTTTCATGTGTTTGATTCGAATCGAGATGGAAATTTAAGCTTAGATGAGTTTGTTACCGTCTTAAGCCAGCGCGAAAGGGACATTGCTCAACCTGTGGAGACAGGAATCATGGTTCATGACTAA

Protein Analysis

439

Amino Acids

49.76

Weight (kDa)

8.46

Isoelectric Point (pI)

48.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_8 PF13833 371 - 420 5.8e-10 EF-hand domain pair
EF-hand_7 PF13499 371 - 419 2.4e-06 EF-hand domain pair
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 94
AccII CGCG 3 cut(s) 182, 295, 1269
AciI CCGC 6 cut(s) 18, 92, 182, 403, 410, 945
AclWI GGATC 2 cut(s) 9, 176
AcoI YGGCCR 1 cut(s) 287
AcsI RAATTY 4 cut(s) 662, 802, 824, 1228
AfaI GTAC 4 cut(s) 158, 431, 448, 1002
AfiI CCNNNNNNNGG 1 cut(s) 227
AflII CTTAAG 1 cut(s) 1258
AflIII ACRYGT 1 cut(s) 293
AgeI ACCGGT 1 cut(s) 272
AgsI TTSAA 8 cut(s) 238, 379, 640, 667, 815, 1042, 1138, 1190
AjnI CCWGG 1 cut(s) 565
AleI CACNNNNGTG 1 cut(s) 720
AloI GAACNNNNNNTCC 1 cut(s) 1293
AluBI AGCT 7 cut(s) 55, 126, 1057, 1098, 1145, 1169, 1236
AluI AGCT 7 cut(s) 55, 126, 1057, 1098, 1145, 1169, 1236
Alw21I GWGCWC 1 cut(s) 712
Alw26I GTCTC 5 cut(s) 118, 466, 531, 1008, 1289
AlwI GGATC 2 cut(s) 9, 176
Ama87I CYCGRG 2 cut(s) 115, 172
AoxI GGCC 5 cut(s) 193, 283, 287, 333, 1086
ApeKI GCWGC 4 cut(s) 108, 304, 1072, 1145
ApoI RAATTY 4 cut(s) 662, 802, 824, 1228
ArsI GACNNNNNNTTYG 2 cut(s) 283, 315
AsiGI ACCGGT 1 cut(s) 272
Asp700I GAANNNNTTC 1 cut(s) 422
AspA2I CCTAGG 1 cut(s) 196
AspLEI GCGC 3 cut(s) 393, 579, 1269
AspS9I GGNCC 4 cut(s) 193, 283, 333, 1087
AsuHPI GGTGA 2 cut(s) 566, 803
AsuII TTCGAA 1 cut(s) 1214
AvaI CYCGRG 2 cut(s) 115, 172
AvrII CCTAGG 1 cut(s) 196
Bbv12I GWGCWC 1 cut(s) 712
BbvCI CCTCAGC 1 cut(s) 863
BbvI GCAGC 4 cut(s) 120, 291, 1084, 1132
BccI CCATC 6 cut(s) 14, 449, 523, 670, 791, 1217
BceAI ACGGC 1 cut(s) 53
BcgI CGANNNNNNTGC 2 cut(s) 416, 450
BciT130I CCWGG 1 cut(s) 567
BclI TGATCA 1 cut(s) 102
BcoDI GTCTC 5 cut(s) 118, 466, 531, 1008, 1289
BfaI CTAG 1 cut(s) 197
BfmI CTRYAG 3 cut(s) 305, 358, 756
BfrI CTTAAG 1 cut(s) 1258
BglII AGATCT 4 cut(s) 45, 481, 1006, 1023
BisI GCNGC 5 cut(s) 92, 109, 305, 1073, 1146
BlnI CCTAGG 1 cut(s) 196
BlpI GCTNAGC 1 cut(s) 1053
BlsI GCNGC 5 cut(s) 93, 110, 306, 1074, 1147
BmcAI AGTACT 1 cut(s) 431
Bme1390I CCNGG 1 cut(s) 567
BmeT110I CYCGRG 2 cut(s) 115, 172
BmgT120I GGNCC 4 cut(s) 193, 283, 333, 1087
BmiI GGNNCC 3 cut(s) 41, 501, 904
BmrFI CCNGG 1 cut(s) 567
BmsI GCATC 5 cut(s) 186, 343, 446, 675, 950
BoxI GACNNNNGTC 1 cut(s) 954
BpmI CTGGAG 1 cut(s) 26
Bpu10I CCTNAGC 1 cut(s) 863
Bpu1102I GCTNAGC 1 cut(s) 1053
Bpu14I TTCGAA 1 cut(s) 1214
BpuEI CTTGAG 1 cut(s) 574
BsaBI GATNNNNATC 1 cut(s) 1215
BsaI GGTCTC 1 cut(s) 466
BsaJI CCNNGG 3 cut(s) 196, 906, 933
BsaWI WCCGGW 2 cut(s) 227, 272
BsaXI ACNNNNNCTCC 2 cut(s) 759, 789
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse118I RCCGGY 2 cut(s) 272, 285
Bse1I ACTGG 2 cut(s) 215, 269
Bse3DI GCAATG 1 cut(s) 1278
Bse8I GATNNNNATC 1 cut(s) 1215
BseBI CCWGG 1 cut(s) 567
BseDI CCNNGG 3 cut(s) 196, 906, 933
BseGI GGATG 2 cut(s) 941, 1135
BseJI GATNNNNATC 1 cut(s) 1215
BseLI CCNNNNNNNGG 1 cut(s) 227
BseMI GCAATG 1 cut(s) 1278
BseMII CTCAG 5 cut(s) 405, 854, 1034, 1044, 1186
BseNI ACTGG 2 cut(s) 215, 269
BseRI GAGGAG 1 cut(s) 1049
BseX3I CGGCCG 1 cut(s) 287
BseXI GCAGC 4 cut(s) 120, 291, 1084, 1132
BseYI CCCAGC 1 cut(s) 51
Bsh1236I CGCG 3 cut(s) 182, 295, 1269
Bsh1285I CGRYCG 1 cut(s) 290
BshFI GGCC 5 cut(s) 195, 285, 289, 335, 1088
BshTI ACCGGT 1 cut(s) 272
BsiEI CGRYCG 1 cut(s) 290
BsiHKAI GWGCWC 1 cut(s) 712
BsiHKCI CYCGRG 2 cut(s) 115, 172
BsiSI CCGG 3 cut(s) 228, 273, 286
BslFI GGGAC 1 cut(s) 1289
BslI CCNNNNNNNGG 1 cut(s) 227
BsmAI GTCTC 5 cut(s) 118, 466, 531, 1008, 1289
BsmBI CGTCTC 2 cut(s) 118, 531
BsmFI GGGAC 1 cut(s) 1289
BsnI GGCC 5 cut(s) 195, 285, 289, 335, 1088
Bso31I GGTCTC 1 cut(s) 466
BsoBI CYCGRG 2 cut(s) 115, 172
Bsp119I TTCGAA 1 cut(s) 1214
Bsp1286I GDGCHC 1 cut(s) 712
Bsp1407I TGTACA 1 cut(s) 446
Bsp1720I GCTNAGC 1 cut(s) 1053
Bsp19I CCATGG 2 cut(s) 906, 933
BspACI CCGC 6 cut(s) 18, 92, 182, 403, 410, 945
BspANI GGCC 5 cut(s) 195, 285, 289, 335, 1088
BspCNI CTCAG 5 cut(s) 406, 855, 1033, 1045, 1185
BspFNI CGCG 3 cut(s) 182, 295, 1269
BspHI TCATGA 2 cut(s) 486, 1312
BspLI GGNNCC 3 cut(s) 41, 501, 904
BspMAI CTGCAG 1 cut(s) 309
BspPI GGATC 2 cut(s) 9, 176
BspT104I TTCGAA 1 cut(s) 1214
BspTI CTTAAG 1 cut(s) 1258
BspTNI GGTCTC 1 cut(s) 466
BsrBI CCGCTC 1 cut(s) 94
BsrDI GCAATG 1 cut(s) 1278
BsrFI RCCGGY 2 cut(s) 272, 285
BsrGI TGTACA 1 cut(s) 446
BsrI ACTGG 2 cut(s) 215, 269
BssAI RCCGGY 2 cut(s) 272, 285
BssECI CCNNGG 3 cut(s) 196, 906, 933
BssT1I CCWWGG 3 cut(s) 196, 906, 933
Bst2UI CCWGG 1 cut(s) 567
Bst4CI ACNGT 4 cut(s) 24, 620, 1103, 1255
BstAFI CTTAAG 1 cut(s) 1258
BstAUI TGTACA 1 cut(s) 446
BstBI TTCGAA 1 cut(s) 1214
BstC8I GCNNGC 6 cut(s) 252, 287, 690, 694, 1143, 1265
BstDEI CTNAG 7 cut(s) 414, 863, 1010, 1020, 1053, 1172, 1237
BstDSI CCRYGG 2 cut(s) 906, 933
BstF5I GGATG 2 cut(s) 941, 1135
BstFNI CGCG 3 cut(s) 182, 295, 1269
BstHHI GCGC 3 cut(s) 393, 579, 1269
BstMAI GTCTC 5 cut(s) 118, 466, 531, 1008, 1289
BstMCI CGRYCG 1 cut(s) 290
BstMWI GCNNNNNNNGC 5 cut(s) 117, 301, 409, 576, 583
BstNI CCWGG 1 cut(s) 567
BstNSI RCATGY 3 cut(s) 955, 1120, 1152
BstPAI GACNNNNGTC 1 cut(s) 954
BstSCI CCNGG 1 cut(s) 565
BstSFI CTRYAG 3 cut(s) 305, 358, 756
BstUI CGCG 3 cut(s) 182, 295, 1269
BstV1I GCAGC 4 cut(s) 120, 291, 1084, 1132
BstX2I RGATCY 5 cut(s) 45, 168, 481, 1006, 1023
BstYI RGATCY 5 cut(s) 45, 168, 481, 1006, 1023
BstZI CGGCCG 1 cut(s) 287
BsuRI GGCC 5 cut(s) 195, 285, 289, 335, 1088
BtgI CCRYGG 2 cut(s) 906, 933
BtgZI GCGATG 1 cut(s) 163
BtsCI GGATG 2 cut(s) 941, 1135
BtsI GCAGTG 1 cut(s) 501
BtsIMutI CAGTG 2 cut(s) 501, 625
Cac8I GCNNGC 6 cut(s) 252, 287, 690, 694, 1143, 1265
CciI TCATGA 2 cut(s) 486, 1312
CfoI GCGC 3 cut(s) 393, 579, 1269
Cfr10I RCCGGY 2 cut(s) 272, 285
Cfr13I GGNCC 4 cut(s) 193, 283, 333, 1087
CseI GACGC 3 cut(s) 100, 301, 944
Csp6I GTAC 4 cut(s) 157, 430, 447, 1001
CspAI ACCGGT 1 cut(s) 272
CviQI GTAC 4 cut(s) 157, 430, 447, 1001
DdeI CTNAG 7 cut(s) 414, 863, 1010, 1020, 1053, 1172, 1237
EaeI YGGCCR 1 cut(s) 287
EagI CGGCCG 1 cut(s) 287
EciI GGCGGA 1 cut(s) 399
EclXI CGGCCG 1 cut(s) 287
Eco130I CCWWGG 3 cut(s) 196, 906, 933
Eco31I GGTCTC 1 cut(s) 466
Eco52I CGGCCG 1 cut(s) 287
Eco88I CYCGRG 2 cut(s) 115, 172
EcoRI GAATTC 2 cut(s) 662, 802
EcoRII CCWGG 1 cut(s) 565
EcoT14I CCWWGG 3 cut(s) 196, 906, 933
ErhI CCWWGG 3 cut(s) 196, 906, 933
Esp3I CGTCTC 2 cut(s) 118, 531
FalI AAGNNNNNCTT 2 cut(s) 329, 361
FaqI GGGAC 1 cut(s) 1289
FbaI TGATCA 1 cut(s) 102
Fnu4HI GCNGC 5 cut(s) 92, 109, 305, 1073, 1146
FokI GGATG 2 cut(s) 928, 1142
FseI GGCCGGCC 1 cut(s) 289
Fsp4HI GCNGC 5 cut(s) 92, 109, 305, 1073, 1146
FspBI CTAG 1 cut(s) 197
GlaI GCGC 3 cut(s) 392, 578, 1268
GluI GCNGC 5 cut(s) 92, 109, 305, 1073, 1146
GsaI CCCAGC 1 cut(s) 55
GsuI CTGGAG 1 cut(s) 26
HaeIII GGCC 5 cut(s) 195, 285, 289, 335, 1088
HapII CCGG 3 cut(s) 228, 273, 286
HgaI GACGC 3 cut(s) 100, 301, 944
HhaI GCGC 3 cut(s) 393, 579, 1269
Hin6I GCGC 3 cut(s) 391, 577, 1267
HinP1I GCGC 3 cut(s) 391, 577, 1267
HincII GTYRAC 2 cut(s) 270, 1122
HindII GTYRAC 2 cut(s) 270, 1122
HindIII AAGCTT 1 cut(s) 1234
HinfI GANTC 7 cut(s) 224, 406, 521, 562, 1211, 1216, 1302
HpaI GTTAAC 1 cut(s) 1122
HpaII CCGG 3 cut(s) 228, 273, 286
HphI GGTGA 2 cut(s) 566, 803
Hpy166II GTNNAC 5 cut(s) 60, 270, 616, 725, 1122
Hpy188I TCNGA 4 cut(s) 11, 102, 520, 1023
Hpy188III TCNNGA 8 cut(s) 43, 137, 221, 238, 487, 735, 1220, 1313
Hpy8I GTNNAC 5 cut(s) 60, 270, 616, 725, 1122
Hpy99I CGWCG 4 cut(s) 28, 250, 295, 1181
HpyAV CCTTC 6 cut(s) 84, 93, 360, 412, 646, 821
HpyCH4III ACNGT 4 cut(s) 24, 620, 1103, 1255
HpyCH4V TGCA 7 cut(s) 307, 437, 696, 926, 941, 1072, 1148
HpyF10VI GCNNNNNNNGC 5 cut(s) 117, 301, 409, 576, 583
HpyF3I CTNAG 7 cut(s) 414, 863, 1010, 1020, 1053, 1172, 1237
HspAI GCGC 3 cut(s) 391, 577, 1267
KroI GCCGGC 1 cut(s) 285
KroNI GCCGGC 1 cut(s) 287
Ksp22I TGATCA 1 cut(s) 102
KspAI GTTAAC 1 cut(s) 1122
LmnI GCTCC 1 cut(s) 45
Lsp1109I GCAGC 4 cut(s) 120, 291, 1084, 1132
LweI GCATC 5 cut(s) 186, 343, 446, 675, 950
MaeI CTAG 1 cut(s) 197
MaeIII GTNAC 2 cut(s) 620, 1249
MbiI CCGCTC 1 cut(s) 94
MboII GAAGA 9 cut(s) 69, 78, 226, 367, 432, 491, 656, 671, 806
MflI RGATCY 5 cut(s) 45, 168, 481, 1006, 1023
MhlI GDGCHC 1 cut(s) 712
MluI ACGCGT 1 cut(s) 293
MlyI GAGTC 1 cut(s) 415
MmeI TCCRAC 2 cut(s) 549, 849
MroNI GCCGGC 1 cut(s) 285
MroXI GAANNNNTTC 1 cut(s) 422
MseI TTAA 4 cut(s) 962, 1121, 1232, 1259
MslI CAYNNNNRTG 2 cut(s) 720, 1158
MspA1I CMGCKG 2 cut(s) 55, 947
MspCI CTTAAG 1 cut(s) 1258
MspI CCGG 3 cut(s) 228, 273, 286
MspR9I CCNGG 1 cut(s) 567
MvaI CCWGG 1 cut(s) 567
MvnI CGCG 3 cut(s) 182, 295, 1269
MwoI GCNNNNNNNGC 5 cut(s) 117, 301, 409, 576, 583
NaeI GCCGGC 1 cut(s) 287
NcoI CCATGG 2 cut(s) 906, 933
NgoMIV GCCGGC 1 cut(s) 285
NlaIV GGNNCC 3 cut(s) 41, 501, 904
NmuCI GTSAC 1 cut(s) 620
NspI RCATGY 3 cut(s) 955, 1120, 1152
NspV TTCGAA 1 cut(s) 1214
OliI CACNNNNGTG 1 cut(s) 720
PagI TCATGA 2 cut(s) 486, 1312
PdiI GCCGGC 1 cut(s) 287
PdmI GAANNNNTTC 1 cut(s) 422
PfeI GAWTC 6 cut(s) 224, 521, 562, 1211, 1216, 1302
PinAI ACCGGT 1 cut(s) 272
PkrI GCNGC 5 cut(s) 93, 110, 306, 1074, 1147
PleI GAGTC 1 cut(s) 414
PpsI GAGTC 1 cut(s) 414
PshAI GACNNNNGTC 1 cut(s) 954
Psp6I CCWGG 1 cut(s) 565
PspFI CCCAGC 1 cut(s) 51
PspGI CCWGG 1 cut(s) 565
PspN4I GGNNCC 3 cut(s) 41, 501, 904
PspPI GGNCC 4 cut(s) 193, 283, 333, 1087
PstI CTGCAG 1 cut(s) 309
PsuI RGATCY 5 cut(s) 45, 168, 481, 1006, 1023
PvuII CAGCTG 1 cut(s) 55
RigI GGCCGGCC 1 cut(s) 289
RsaI GTAC 4 cut(s) 158, 431, 448, 1002
RsaNI GTAC 4 cut(s) 157, 430, 447, 1001
RseI CAYNNNNRTG 2 cut(s) 720, 1158
SaqAI TTAA 4 cut(s) 962, 1121, 1232, 1259
SatI GCNGC 5 cut(s) 92, 109, 305, 1073, 1146
Sau96I GGNCC 4 cut(s) 193, 283, 333, 1087
ScaI AGTACT 1 cut(s) 431
SchI GAGTC 1 cut(s) 415
ScrFI CCNGG 1 cut(s) 567
SduI GDGCHC 1 cut(s) 712
SfaNI GCATC 5 cut(s) 186, 343, 446, 675, 950
SfcI CTRYAG 3 cut(s) 305, 358, 756
SfuI TTCGAA 1 cut(s) 1214
SmiMI CAYNNNNRTG 2 cut(s) 720, 1158
SmlI CTYRAG 2 cut(s) 589, 1258
SmoI CTYRAG 2 cut(s) 589, 1258
SsiI CCGC 6 cut(s) 18, 92, 182, 403, 410, 945
SspMI CTAG 1 cut(s) 197
StyD4I CCNGG 1 cut(s) 565
StyI CCWWGG 3 cut(s) 196, 906, 933
TaaI ACNGT 4 cut(s) 24, 620, 1103, 1255
TaqI TCGA 6 cut(s) 26, 426, 730, 1032, 1214, 1219
TatI WGTACW 2 cut(s) 429, 446
TauI GCSGC 1 cut(s) 94
TfiI GAWTC 6 cut(s) 224, 521, 562, 1211, 1216, 1302
Tru1I TTAA 4 cut(s) 962, 1121, 1232, 1259
Tru9I TTAA 4 cut(s) 962, 1121, 1232, 1259
TscAI CASTG 2 cut(s) 501, 625
TseFI GTSAC 1 cut(s) 620
TseI GCWGC 4 cut(s) 108, 304, 1072, 1145
Tsp45I GTSAC 1 cut(s) 620
TspDTI ATGAA 4 cut(s) 589, 870, 1190, 1301
TspGWI ACGGA 2 cut(s) 639, 780
TspRI CASTG 2 cut(s) 501, 625
Vha464I CTTAAG 1 cut(s) 1258
XapI RAATTY 4 cut(s) 662, 802, 824, 1228
XceI RCATGY 3 cut(s) 955, 1120, 1152
XmaJI CCTAGG 1 cut(s) 196
XmnI GAANNNNTTC 1 cut(s) 422
XspI CTAG 1 cut(s) 197
ZrmI AGTACT 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.