Rmu_ssc0000109.1_g000001

Calcium uptake protein 1

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000109.1
Physical Location & Seq
Forward (+)
43 .. 4246
4204 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000109.1_g000001.1.cds

Sequence Viewer

Length: 1614 bp
atgtccctcagacgatccgcaccgtcgatctaccaacggctccagatctcccagctgtccacagccccacagccttcttcgccgctctctctgatcagcagcgtctcgggctttagctctaaccctcacgaaaacccccaaaactcgtacctcaaatggatctcgggcatcgcggtcgggtcgggcctagggttgctctactggtctaatcccgattccgatttcttcaagaagtcgtcgctggctttcgctgactggtcaaccgggttggagggccggccgacgcgttctttgctgcagaaattatctttacctgaaattagggccaagtttctctttggagatgcctataggagaaggattttcttcaactatgagaagcgcatgaggttgcggagtccgcctgagaaggtgttcgagtactttgcatcttcgtgtacagcagagggagaattacttatgagaccagaagatctcatgagggcagtggttcctgttttccctccatctgaatccaaccttgttagagacgggtatttgagaggtgaaaggaatcctggcgagttgcgctgttcgccctcaagttttttcatgctttttgatgtaaacagtgacggatatatttccttcaaagagtatattttctttgtaacactactaagcattccagagtccagtttctatgtgactttcaaaatgtttgacactgacgatagtggagaaattgacaaggaagaattcaaaaaagtgatggcattgatgcgagcctgcaacagacagggtgctcaacacaggggtggacttcgatctggactaaaagttaggggttctgtagaaaacggagggcttgtggagttcttttttggtgaagatgggaatgagcgccttcaacttgataaatttgtcaagtttttgagagatttacacaatgaaatgctgaggttggagttttcccactacgactataaaaggcgaggaaccatggtggcaaaggattttgcattatccatggttgcatccgccgacatgcgtcatttaagcagtttgcttgatcgggttgataaattggacaatgtaccggatcttagagacactcagatctcattcgaggagttcaaaaactttgcagagcttcgcaaaaaattgcagccatttgctttggcccttttcagctacggtaaagcaaatggcatgttaacacaggaggatttcaaacgagctgcatttcttgtgtgtggcatagctctcagcgacgatgtggttgaaatcatctttcatgtgtttgattcgaatcaagatggaaatttaagcttagatgagtttgttaccgttctaagccagcgcgaaagggatattgctcaacctgtggagacgggaatcatggttcatgattggtcagacatttacatgattgttagcagcattatctcagctacagcagcactgcatcagccccaacctacctttactcaattattctgcactttaaatcccattacttgtgttacaccagttcactcttacaccacggtcatgattaaaccagaaatttttggaattgttgagttcacttgtaatgctaatcttcgcatcgagaacactatgatcgcgtaa

Protein Analysis

537

Amino Acids

61.0

Weight (kDa)

5.95

Isoelectric Point (pI)

46.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 85
AccII CGCG 4 cut(s) 173, 286, 1344, 1610
AciI CCGC 6 cut(s) 18, 83, 173, 394, 401, 1020
AclWI GGATC 3 cut(s) 9, 167, 1089
AcoI YGGCCR 1 cut(s) 278
AcsI RAATTY 4 cut(s) 737, 899, 1303, 1548
AfaI GTAC 4 cut(s) 149, 422, 439, 1077
AflIII ACRYGT 1 cut(s) 284
AgsI TTSAA 9 cut(s) 229, 370, 631, 694, 742, 890, 1117, 1213, 1265
AjnI CCWGG 1 cut(s) 556
AleI CACNNNNGTG 1 cut(s) 795
AloI GAACNNNNNNTCC 2 cut(s) 1368, 1400
AluBI AGCT 8 cut(s) 55, 117, 1132, 1173, 1220, 1244, 1311, 1433
AluI AGCT 8 cut(s) 55, 117, 1132, 1173, 1220, 1244, 1311, 1433
Alw21I GWGCWC 1 cut(s) 787
Alw26I GTCTC 5 cut(s) 109, 457, 522, 1083, 1364
AlwI GGATC 3 cut(s) 9, 167, 1089
Ama87I CYCGRG 2 cut(s) 106, 163
AoxI GGCC 5 cut(s) 184, 274, 278, 324, 1161
ApeKI GCWGC 6 cut(s) 99, 295, 1147, 1220, 1419, 1439
ApoI RAATTY 4 cut(s) 737, 899, 1303, 1548
ArsI GACNNNNNNTTYG 2 cut(s) 274, 306
Asp700I GAANNNNTTC 1 cut(s) 413
AspA2I CCTAGG 1 cut(s) 187
AspLEI GCGC 4 cut(s) 384, 570, 885, 1344
AspS9I GGNCC 4 cut(s) 184, 274, 324, 1162
AsuC2I CCSGG 1 cut(s) 265
AsuHPI GGTGA 2 cut(s) 557, 878
AsuII TTCGAA 1 cut(s) 1289
AvaI CYCGRG 2 cut(s) 106, 163
AvrII CCTAGG 1 cut(s) 187
Bbv12I GWGCWC 1 cut(s) 787
BbvCI CCTCAGC 1 cut(s) 938
BbvI GCAGC 6 cut(s) 111, 282, 1159, 1207, 1431, 1451
BccI CCATC 4 cut(s) 514, 745, 866, 1292
BceAI ACGGC 1 cut(s) 53
BcgI CGANNNNNNTGC 4 cut(s) 157, 191, 407, 441
BciT130I CCWGG 1 cut(s) 558
BclI TGATCA 1 cut(s) 93
BcnI CCSGG 1 cut(s) 265
BcoDI GTCTC 5 cut(s) 109, 457, 522, 1083, 1364
BfaI CTAG 1 cut(s) 188
BfmI CTRYAG 4 cut(s) 296, 349, 831, 1434
BfoI RGCGCY 1 cut(s) 886
BglII AGATCT 3 cut(s) 45, 472, 1098
BisI GCNGC 7 cut(s) 83, 100, 296, 1148, 1221, 1420, 1440
BlnI CCTAGG 1 cut(s) 187
BlsI GCNGC 7 cut(s) 84, 101, 297, 1149, 1222, 1421, 1441
BmcAI AGTACT 1 cut(s) 422
Bme1390I CCNGG 2 cut(s) 265, 558
BmeT110I CYCGRG 2 cut(s) 106, 163
BmgT120I GGNCC 4 cut(s) 184, 274, 324, 1162
BmiI GGNNCC 3 cut(s) 41, 492, 979
BmrFI CCNGG 2 cut(s) 265, 558
BmsI GCATC 7 cut(s) 177, 334, 437, 750, 1025, 1456, 1599
BoxI GACNNNNGTC 1 cut(s) 1029
BpmI CTGGAG 1 cut(s) 26
Bpu10I CCTNAGC 1 cut(s) 938
Bpu14I TTCGAA 1 cut(s) 1289
BpuEI CTTGAG 1 cut(s) 565
BpuMI CCSGG 1 cut(s) 265
BsaBI GATNNNNATC 1 cut(s) 1290
BsaI GGTCTC 1 cut(s) 457
BsaJI CCNNGG 4 cut(s) 187, 981, 1008, 1527
BsaWI WCCGGW 1 cut(s) 1078
BsaXI ACNNNNNCTCC 2 cut(s) 834, 864
Bse118I RCCGGY 1 cut(s) 276
Bse1I ACTGG 4 cut(s) 206, 260, 675, 1511
Bse8I GATNNNNATC 1 cut(s) 1290
BseBI CCWGG 1 cut(s) 558
BseDI CCNNGG 4 cut(s) 187, 981, 1008, 1527
BseGI GGATG 1 cut(s) 1016
BseJI GATNNNNATC 1 cut(s) 1290
BseMII CTCAG 6 cut(s) 22, 396, 929, 1109, 1261, 1443
BseNI ACTGG 4 cut(s) 206, 260, 675, 1511
BseRI GAGGAG 1 cut(s) 1124
BseX3I CGGCCG 1 cut(s) 278
BseXI GCAGC 6 cut(s) 111, 282, 1159, 1207, 1431, 1451
BseYI CCCAGC 1 cut(s) 51
BsgI GTGCAG 1 cut(s) 1465
Bsh1236I CGCG 4 cut(s) 173, 286, 1344, 1610
Bsh1285I CGRYCG 2 cut(s) 177, 281
BshFI GGCC 5 cut(s) 186, 276, 280, 326, 1163
BsiEI CGRYCG 2 cut(s) 177, 281
BsiHKAI GWGCWC 1 cut(s) 787
BsiHKCI CYCGRG 2 cut(s) 106, 163
BsiSI CCGG 3 cut(s) 264, 277, 1079
BsmAI GTCTC 5 cut(s) 109, 457, 522, 1083, 1364
BsmBI CGTCTC 3 cut(s) 109, 522, 1364
BsmI GAATGC 1 cut(s) 663
BsnI GGCC 5 cut(s) 186, 276, 280, 326, 1163
Bso31I GGTCTC 1 cut(s) 457
BsoBI CYCGRG 2 cut(s) 106, 163
Bsp119I TTCGAA 1 cut(s) 1289
Bsp1286I GDGCHC 1 cut(s) 787
Bsp1407I TGTACA 1 cut(s) 437
Bsp19I CCATGG 2 cut(s) 981, 1008
BspACI CCGC 6 cut(s) 18, 83, 173, 394, 401, 1020
BspANI GGCC 5 cut(s) 186, 276, 280, 326, 1163
BspCNI CTCAG 6 cut(s) 21, 397, 930, 1108, 1260, 1442
BspFNI CGCG 4 cut(s) 173, 286, 1344, 1610
BspHI TCATGA 3 cut(s) 477, 1387, 1533
BspLI GGNNCC 3 cut(s) 41, 492, 979
BspMAI CTGCAG 1 cut(s) 300
BspPI GGATC 3 cut(s) 9, 167, 1089
BspT104I TTCGAA 1 cut(s) 1289
BspTNI GGTCTC 1 cut(s) 457
BsrBI CCGCTC 1 cut(s) 85
BsrFI RCCGGY 1 cut(s) 276
BsrGI TGTACA 1 cut(s) 437
BsrI ACTGG 4 cut(s) 206, 260, 675, 1511
BssAI RCCGGY 1 cut(s) 276
BssECI CCNNGG 4 cut(s) 187, 981, 1008, 1527
BssT1I CCWWGG 3 cut(s) 187, 981, 1008
Bst2UI CCWGG 1 cut(s) 558
Bst4CI ACNGT 5 cut(s) 24, 611, 1178, 1330, 1531
BstAUI TGTACA 1 cut(s) 437
BstBI TTCGAA 1 cut(s) 1289
BstC8I GCNNGC 5 cut(s) 243, 278, 765, 769, 1340
BstDSI CCRYGG 3 cut(s) 981, 1008, 1527
BstF5I GGATG 1 cut(s) 1016
BstFNI CGCG 4 cut(s) 173, 286, 1344, 1610
BstH2I RGCGCY 1 cut(s) 886
BstHHI GCGC 4 cut(s) 384, 570, 885, 1344
BstMAI GTCTC 5 cut(s) 109, 457, 522, 1083, 1364
BstMCI CGRYCG 2 cut(s) 177, 281
BstMWI GCNNNNNNNGC 7 cut(s) 79, 108, 292, 400, 567, 574, 1439
BstNI CCWGG 1 cut(s) 558
BstNSI RCATGY 2 cut(s) 1030, 1195
BstPAI GACNNNNGTC 1 cut(s) 1029
BstSCI CCNGG 2 cut(s) 263, 556
BstSFI CTRYAG 4 cut(s) 296, 349, 831, 1434
BstUI CGCG 4 cut(s) 173, 286, 1344, 1610
BstV1I GCAGC 6 cut(s) 111, 282, 1159, 1207, 1431, 1451
BstX2I RGATCY 5 cut(s) 45, 159, 472, 1081, 1098
BstYI RGATCY 5 cut(s) 45, 159, 472, 1081, 1098
BstZI CGGCCG 1 cut(s) 278
BsuRI GGCC 5 cut(s) 186, 276, 280, 326, 1163
BtgI CCRYGG 3 cut(s) 981, 1008, 1527
BtgZI GCGATG 1 cut(s) 154
BtsCI GGATG 1 cut(s) 1016
BtsI GCAGTG 2 cut(s) 492, 1442
BtsIMutI CAGTG 4 cut(s) 492, 616, 705, 1442
Cac8I GCNNGC 5 cut(s) 243, 278, 765, 769, 1340
CciI TCATGA 3 cut(s) 477, 1387, 1533
CfoI GCGC 4 cut(s) 384, 570, 885, 1344
Cfr10I RCCGGY 1 cut(s) 276
Cfr13I GGNCC 4 cut(s) 184, 274, 324, 1162
CseI GACGC 3 cut(s) 91, 292, 1019
Csp6I GTAC 4 cut(s) 148, 421, 438, 1076
CviQI GTAC 4 cut(s) 148, 421, 438, 1076
DraI TTTAAA 1 cut(s) 1488
EaeI YGGCCR 1 cut(s) 278
EagI CGGCCG 1 cut(s) 278
EciI GGCGGA 2 cut(s) 390, 1009
EclXI CGGCCG 1 cut(s) 278
Eco130I CCWWGG 3 cut(s) 187, 981, 1008
Eco31I GGTCTC 1 cut(s) 457
Eco52I CGGCCG 1 cut(s) 278
Eco88I CYCGRG 2 cut(s) 106, 163
EcoRI GAATTC 1 cut(s) 737
EcoRII CCWGG 1 cut(s) 556
EcoT14I CCWWGG 3 cut(s) 187, 981, 1008
ErhI CCWWGG 3 cut(s) 187, 981, 1008
Esp3I CGTCTC 3 cut(s) 109, 522, 1364
FalI AAGNNNNNCTT 2 cut(s) 320, 352
FbaI TGATCA 1 cut(s) 93
Fnu4HI GCNGC 7 cut(s) 83, 100, 296, 1148, 1221, 1420, 1440
FokI GGATG 1 cut(s) 1003
FseI GGCCGGCC 1 cut(s) 280
Fsp4HI GCNGC 7 cut(s) 83, 100, 296, 1148, 1221, 1420, 1440
FspBI CTAG 1 cut(s) 188
GlaI GCGC 4 cut(s) 383, 569, 884, 1343
GluI GCNGC 7 cut(s) 83, 100, 296, 1148, 1221, 1420, 1440
GsaI CCCAGC 1 cut(s) 55
GsuI CTGGAG 1 cut(s) 26
HaeII RGCGCY 1 cut(s) 886
HaeIII GGCC 5 cut(s) 186, 276, 280, 326, 1163
HapII CCGG 3 cut(s) 264, 277, 1079
HgaI GACGC 3 cut(s) 91, 292, 1019
HhaI GCGC 4 cut(s) 384, 570, 885, 1344
Hin6I GCGC 4 cut(s) 382, 568, 883, 1342
HinP1I GCGC 4 cut(s) 382, 568, 883, 1342
HincII GTYRAC 2 cut(s) 261, 1197
HindII GTYRAC 2 cut(s) 261, 1197
HindIII AAGCTT 1 cut(s) 1309
HinfI GANTC 8 cut(s) 215, 397, 512, 553, 671, 1286, 1291, 1377
HpaI GTTAAC 1 cut(s) 1197
HpaII CCGG 3 cut(s) 264, 277, 1079
HphI GGTGA 2 cut(s) 557, 878
Hpy166II GTNNAC 8 cut(s) 60, 261, 438, 607, 800, 1197, 1516, 1569
Hpy188I TCNGA 6 cut(s) 11, 93, 220, 511, 1098, 1399
Hpy8I GTNNAC 8 cut(s) 60, 261, 438, 607, 800, 1197, 1516, 1569
Hpy99I CGWCG 4 cut(s) 28, 241, 286, 1256
HpyAV CCTTC 5 cut(s) 84, 351, 403, 637, 896
HpyCH4III ACNGT 5 cut(s) 24, 611, 1178, 1330, 1531
HpyF10VI GCNNNNNNNGC 7 cut(s) 79, 108, 292, 400, 567, 574, 1439
HspAI GCGC 4 cut(s) 382, 568, 883, 1342
KroI GCCGGC 1 cut(s) 276
KroNI GCCGGC 1 cut(s) 278
Ksp22I TGATCA 1 cut(s) 93
KspAI GTTAAC 1 cut(s) 1197
LmnI GCTCC 1 cut(s) 45
Lsp1109I GCAGC 6 cut(s) 111, 282, 1159, 1207, 1431, 1451
LweI GCATC 7 cut(s) 177, 334, 437, 750, 1025, 1456, 1599
MaeI CTAG 1 cut(s) 188
MaeIII GTNAC 5 cut(s) 611, 649, 685, 1324, 1504
MbiI CCGCTC 1 cut(s) 85
MboII GAAGA 8 cut(s) 69, 217, 358, 423, 482, 746, 881, 1577
MflI RGATCY 5 cut(s) 45, 159, 472, 1081, 1098
MhlI GDGCHC 1 cut(s) 787
MluI ACGCGT 1 cut(s) 284
MlyI GAGTC 2 cut(s) 406, 680
MmeI TCCRAC 3 cut(s) 249, 540, 924
MroNI GCCGGC 1 cut(s) 276
MroXI GAANNNNTTC 1 cut(s) 413
MseI TTAA 5 cut(s) 1037, 1196, 1307, 1487, 1539
MslI CAYNNNNRTG 4 cut(s) 433, 795, 1406, 1532
MspA1I CMGCKG 1 cut(s) 55
MspI CCGG 3 cut(s) 264, 277, 1079
MspR9I CCNGG 2 cut(s) 265, 558
Mva1269I GAATGC 1 cut(s) 663
MvaI CCWGG 1 cut(s) 558
MvnI CGCG 4 cut(s) 173, 286, 1344, 1610
MwoI GCNNNNNNNGC 7 cut(s) 79, 108, 292, 400, 567, 574, 1439
NaeI GCCGGC 1 cut(s) 278
NciI CCSGG 1 cut(s) 265
NcoI CCATGG 2 cut(s) 981, 1008
NgoMIV GCCGGC 1 cut(s) 276
NlaIV GGNNCC 3 cut(s) 41, 492, 979
NmuCI GTSAC 2 cut(s) 611, 685
NspI RCATGY 2 cut(s) 1030, 1195
NspV TTCGAA 1 cut(s) 1289
OliI CACNNNNGTG 1 cut(s) 795
PagI TCATGA 3 cut(s) 477, 1387, 1533
PctI GAATGC 1 cut(s) 663
PdiI GCCGGC 1 cut(s) 278
PdmI GAANNNNTTC 1 cut(s) 413
PfeI GAWTC 6 cut(s) 215, 512, 553, 1286, 1291, 1377
PkrI GCNGC 7 cut(s) 84, 101, 297, 1149, 1222, 1421, 1441
PleI GAGTC 2 cut(s) 405, 679
PpsI GAGTC 2 cut(s) 405, 679
PshAI GACNNNNGTC 1 cut(s) 1029
Psp6I CCWGG 1 cut(s) 556
PspFI CCCAGC 1 cut(s) 51
PspGI CCWGG 1 cut(s) 556
PspN4I GGNNCC 3 cut(s) 41, 492, 979
PspPI GGNCC 4 cut(s) 184, 274, 324, 1162
PstI CTGCAG 1 cut(s) 300
PsuI RGATCY 5 cut(s) 45, 159, 472, 1081, 1098
PvuII CAGCTG 1 cut(s) 55
RigI GGCCGGCC 1 cut(s) 280
RsaI GTAC 4 cut(s) 149, 422, 439, 1077
RsaNI GTAC 4 cut(s) 148, 421, 438, 1076
RseI CAYNNNNRTG 4 cut(s) 433, 795, 1406, 1532
SaqAI TTAA 5 cut(s) 1037, 1196, 1307, 1487, 1539
SatI GCNGC 7 cut(s) 83, 100, 296, 1148, 1221, 1420, 1440
Sau96I GGNCC 4 cut(s) 184, 274, 324, 1162
ScaI AGTACT 1 cut(s) 422
SchI GAGTC 2 cut(s) 406, 680
ScrFI CCNGG 2 cut(s) 265, 558
SduI GDGCHC 1 cut(s) 787
SfaNI GCATC 7 cut(s) 177, 334, 437, 750, 1025, 1456, 1599
SfcI CTRYAG 4 cut(s) 296, 349, 831, 1434
SfuI TTCGAA 1 cut(s) 1289
SmiMI CAYNNNNRTG 4 cut(s) 433, 795, 1406, 1532
SmlI CTYRAG 1 cut(s) 580
SmoI CTYRAG 1 cut(s) 580
SsiI CCGC 6 cut(s) 18, 83, 173, 394, 401, 1020
SspMI CTAG 1 cut(s) 188
StyD4I CCNGG 2 cut(s) 263, 556
StyI CCWWGG 3 cut(s) 187, 981, 1008
TaaI ACNGT 5 cut(s) 24, 611, 1178, 1330, 1531
TaqI TCGA 6 cut(s) 26, 417, 805, 1107, 1289, 1593
TatI WGTACW 2 cut(s) 420, 437
TauI GCSGC 1 cut(s) 85
TfiI GAWTC 6 cut(s) 215, 512, 553, 1286, 1291, 1377
Tru1I TTAA 5 cut(s) 1037, 1196, 1307, 1487, 1539
Tru9I TTAA 5 cut(s) 1037, 1196, 1307, 1487, 1539
TscAI CASTG 4 cut(s) 492, 616, 712, 1449
TseFI GTSAC 2 cut(s) 611, 685
TseI GCWGC 6 cut(s) 99, 295, 1147, 1220, 1419, 1439
Tsp45I GTSAC 2 cut(s) 611, 685
TspDTI ATGAA 4 cut(s) 580, 945, 1265, 1376
TspGWI ACGGA 2 cut(s) 630, 855
TspRI CASTG 4 cut(s) 492, 616, 712, 1449
XapI RAATTY 4 cut(s) 737, 899, 1303, 1548
XceI RCATGY 2 cut(s) 1030, 1195
XmaJI CCTAGG 1 cut(s) 187
XmnI GAANNNNTTC 1 cut(s) 413
XspI CTAG 1 cut(s) 188
ZrmI AGTACT 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.