Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007151

Physical Location & Seq

Genomic Coordinates Forward (+)

41837781 .. 41841033

Gene Structure 3253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0270900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGGGAGGAGGAGGAACGCTTCAGTGAATGTTCTGTTTCAATGGGTGAGGAGGCAGTCAATGAAAGTCAAGATCTTTCTTGGAGCCTTTCTTGCGCTGTGTGGTTTGGTGGCACTGAAGTTTTGGGTCAAGAATCATGACCATTTTTTCATTGCCTCTGAAGCCATTCATTTTCTGGGGATCATCGTCCTCATATACAAGCTCACAACCCAAAAGACCTGCTCTGGTCTTTCCCTAAAGACTCAAGAACTCACAGCTGCCTTTGTAGCAGTAAGATTGGTTTGCAGTACCATCATGGAGGCTGATGTGCACACTGTGCTAGATTTTGCTACTCTCATTTCAACAGCTTGGCTCATTTATATGATACGGTTCAAACTGAAGTCAACCTACATAAAGGAACTCGACAACTTTCGCTTATATTTTGTGGTGGTGCCTGCTGCTATCCTTGCCCTGCTTTTCCACCCATACATGCTGAGTGGTCGTATTACTCGAGTTCTTTGGGCATTTGGTGGGTACATAGAAGCTGTTTCAGTACTGCCACAGCTTCGTTTGATGCAGAATGCAAAGATGATTGAACCATTTACCTCCCATTATGTATTTGCATTGGGTATTTCAAGATTCTTTGCTTGTGCTCATTGGATCATTATGATCTACGAAACTAAAGGCAAATATCTATTCTTGGTTGGGAGTGGTTATTCCTGGATTTTGGCTGCCTTGATCTGTGAAATTGTTCAGACATTCATCTTAGCAGACTTTTGTTACTATTACATAAAGAGTTATGTACAAGGTCAGCTCGTAATGAGGATGCCTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006839 GO:0006851 GO:0006873 GO:0006874 GO:0006875 GO:0008150 GO:0009987 GO:0016020 GO:0016021 GO:0019725 GO:0019866 GO:0030001 GO:0030003 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0032592 GO:0032991 GO:0034220 GO:0034702 GO:0034703 GO:0034704 GO:0036444 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0046872 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051560 GO:0051561 GO:0051562 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055085 GO:0060401 GO:0065007 GO:0065008 GO:0070013 GO:0070509 GO:0070588 GO:0070838 GO:0072503 GO:0072507 GO:0072511 GO:0098573 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098798 GO:0098800 GO:1902495 GO:1990246 GO:1990351 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_8

Protein Analysis

271

Amino Acids

31.16

Weight (kDa)

9.61

Isoelectric Point (pI)

33.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ER_lumen_recept	PF00810	73 - 215	3.5e-42	ER lumen protein retaining receptor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32060 AT4G32060
fragaria_vesca	FvH4_2g28590 FvH4_2g28590
malus_domestica	MD08G1152800.v1.1 MD15G1129400.v1.1
prunus_persica	Prupe.1G485000_v2.0.a1 Prupe.1G485000_v2.0.a1 Prupe.1G485000_v2.0.a1 Prupe.1G485000_v2.0.a1 Prupe.1G485000_v2.0.a1 Prupe.1G485000_v2.0.a1
pyrus_communis	pycom08g13170 pycom15g11660
rosa_chinensis	RchiOBHm_Chr6g0297361
rosa_laevigata	RLG00000011608
rosa_multiflora	Rmu_ssc0000109.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170610
rosa_rugosa	Rorug06G0270900 Rorug06G0271000
rosa_samantha	Rh6AG382400 Rh6BG390500 Rh6CG395600 Rh6DG382600
rosa_wichuraiana	Rw6G033310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	227
AccB1I	GGYRCC	1 cut(s)	430
AclWI	GGATC	2 cut(s)	188, 647
AcuI	CTGAAG	4 cut(s)	6, 137, 180, 398
AdeI	CACNNNGTG	1 cut(s)	316
AfaI	GTAC	4 cut(s)	289, 515, 534, 783
AgsI	TTSAA	5 cut(s)	41, 342, 373, 575, 615
AjnI	CCWGG	1 cut(s)	698
AluBI	AGCT	6 cut(s)	202, 257, 347, 524, 544, 793
AluI	AGCT	6 cut(s)	202, 257, 347, 524, 544, 793
Alw21I	GWGCWC	2 cut(s)	312, 634
Alw44I	GTGCAC	1 cut(s)	308
AlwI	GGATC	2 cut(s)	188, 647
Ama87I	CYCGRG	1 cut(s)	489
ApaLI	GTGCAC	1 cut(s)	308
ApeKI	GCWGC	3 cut(s)	257, 437, 710
Asp700I	GAANNNNTTC	2 cut(s)	165, 729
AspLEI	GCGC	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	58
AvaI	CYCGRG	1 cut(s)	489
BaeGI	GKGCMC	1 cut(s)	312
BanI	GGYRCC	1 cut(s)	430
BarI	GAAGNNNNNNTAC	2 cut(s)	371, 403
Bbv12I	GWGCWC	2 cut(s)	312, 634
BbvI	GCAGC	3 cut(s)	244, 424, 697
BccI	CCATC	1 cut(s)	299
BciT130I	CCWGG	1 cut(s)	700
BfaI	CTAG	2 cut(s)	320, 814
BfuAI	ACCTGC	1 cut(s)	227
BglII	AGATCT	1 cut(s)	72
BisI	GCNGC	3 cut(s)	258, 438, 711
BlsI	GCNGC	3 cut(s)	259, 439, 712
BmcAI	AGTACT	1 cut(s)	534
Bme1390I	CCNGG	1 cut(s)	700
BmeT110I	CYCGRG	1 cut(s)	489
BmiI	GGNNCC	2 cut(s)	85, 432
BmrFI	CCNGG	1 cut(s)	700
BmsI	GCATC	2 cut(s)	543, 795
BpuEI	CTTGAG	1 cut(s)	228
Bse3DI	GCAATG	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	700
BseGI	GGATG	1 cut(s)	810
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	1 cut(s)	464
BseRI	GAGGAG	3 cut(s)	22, 25, 64
BseSI	GKGCMC	1 cut(s)	312
BseXI	GCAGC	3 cut(s)	244, 424, 697
BshNI	GGYRCC	1 cut(s)	430
BsiHKAI	GWGCWC	2 cut(s)	312, 634
BsiHKCI	CYCGRG	1 cut(s)	489
BsmI	GAATGC	1 cut(s)	565
BsoBI	CYCGRG	1 cut(s)	489
Bsp1286I	GDGCHC	2 cut(s)	312, 634
Bsp1407I	TGTACA	1 cut(s)	781
Bsp143I	GATC	5 cut(s)	72, 180, 639, 648, 717
BspCNI	CTCAG	1 cut(s)	465
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	2 cut(s)	85, 432
BspMI	ACCTGC	1 cut(s)	227
BspPI	GGATC	2 cut(s)	188, 647
BspT107I	GGYRCC	1 cut(s)	430
BsrDI	GCAATG	1 cut(s)	150
BsrGI	TGTACA	1 cut(s)	781
BssMI	GATC	5 cut(s)	72, 180, 639, 648, 717
Bst2UI	CCWGG	1 cut(s)	700
Bst4CI	ACNGT	2 cut(s)	316, 369
BstAPI	GCANNNNNTGC	1 cut(s)	316
BstAUI	TGTACA	1 cut(s)	781
BstC8I	GCNNGC	1 cut(s)	435
BstDEI	CTNAG	2 cut(s)	473, 745
BstF5I	GGATG	1 cut(s)	810
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	5 cut(s)	75, 183, 642, 651, 720
BstMBI	GATC	5 cut(s)	72, 180, 639, 648, 717
BstMWI	GCNNNNNNNGC	5 cut(s)	92, 161, 266, 316, 446
BstNI	CCWGG	1 cut(s)	700
BstNSI	RCATGY	1 cut(s)	472
BstSCI	CCNGG	1 cut(s)	698
BstSLI	GKGCMC	1 cut(s)	312
BstV1I	GCAGC	3 cut(s)	244, 424, 697
BstX2I	RGATCY	1 cut(s)	72
BstYI	RGATCY	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	810
BtsIMutI	CAGTG	3 cut(s)	30, 113, 312
BveI	ACCTGC	1 cut(s)	227
Cac8I	GCNNGC	1 cut(s)	435
CciI	TCATGA	1 cut(s)	136
CfoI	GCGC	1 cut(s)	97
Csp6I	GTAC	4 cut(s)	288, 514, 533, 782
CviAII	CATG	3 cut(s)	137, 295, 469
CviQI	GTAC	4 cut(s)	288, 514, 533, 782
DdeI	CTNAG	2 cut(s)	473, 745
DpnI	GATC	5 cut(s)	74, 182, 641, 650, 719
DpnII	GATC	5 cut(s)	72, 180, 639, 648, 717
DraIII	CACNNNGTG	1 cut(s)	316
Eco57I	CTGAAG	4 cut(s)	6, 137, 180, 398
Eco88I	CYCGRG	1 cut(s)	489
EcoRII	CCWGG	1 cut(s)	698
FaeI	CATG	3 cut(s)	140, 298, 472
FatI	CATG	3 cut(s)	136, 294, 468
Fnu4HI	GCNGC	3 cut(s)	258, 438, 711
Fsp4HI	GCNGC	3 cut(s)	258, 438, 711
FspBI	CTAG	2 cut(s)	320, 814
GlaI	GCGC	1 cut(s)	96
GluI	GCNGC	3 cut(s)	258, 438, 711
HhaI	GCGC	1 cut(s)	97
Hin1II	CATG	3 cut(s)	140, 298, 472
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HincII	GTYRAC	1 cut(s)	384
HindII	GTYRAC	1 cut(s)	384
HinfI	GANTC	3 cut(s)	133, 241, 618
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	2 cut(s)	310, 384
Hpy188I	TCNGA	2 cut(s)	160, 735
Hpy188III	TCNNGA	5 cut(s)	70, 130, 137, 245, 615
Hpy8I	GTNNAC	2 cut(s)	310, 384
HpyCH4III	ACNGT	2 cut(s)	316, 369
HpyCH4V	TGCA	5 cut(s)	285, 310, 556, 563, 602
HpyF10VI	GCNNNNNNNGC	5 cut(s)	92, 161, 266, 316, 446
HpyF3I	CTNAG	2 cut(s)	473, 745
Hsp92II	CATG	3 cut(s)	140, 298, 472
HspAI	GCGC	1 cut(s)	95
Kzo9I	GATC	5 cut(s)	72, 180, 639, 648, 717
LmnI	GCTCC	1 cut(s)	83
LpnPI	CCDG	7 cut(s)	161, 210, 232, 447, 464, 685, 712
Lsp1109I	GCAGC	3 cut(s)	244, 424, 697
LweI	GCATC	2 cut(s)	543, 795
MaeI	CTAG	2 cut(s)	320, 814
MaeIII	GTNAC	1 cut(s)	758
MalI	GATC	5 cut(s)	74, 182, 641, 650, 719
MboI	GATC	5 cut(s)	72, 180, 639, 648, 717
MflI	RGATCY	1 cut(s)	72
MhlI	GDGCHC	2 cut(s)	312, 634
MluCI	AATT	1 cut(s)	726
MlyI	GAGTC	1 cut(s)	235
MnlI	CCTC	9 cut(s)	3, 6, 42, 45, 166, 200, 292, 595, 795
MroXI	GAANNNNTTC	2 cut(s)	165, 729
MslI	CAYNNNNRTG	1 cut(s)	359
MspA1I	CMGCKG	1 cut(s)	257
MspR9I	CCNGG	1 cut(s)	700
Mva1269I	GAATGC	1 cut(s)	565
MvaI	CCWGG	1 cut(s)	700
MwoI	GCNNNNNNNGC	5 cut(s)	92, 161, 266, 316, 446
NdeII	GATC	5 cut(s)	72, 180, 639, 648, 717
NlaIII	CATG	3 cut(s)	140, 298, 472
NlaIV	GGNNCC	2 cut(s)	85, 432
NspI	RCATGY	1 cut(s)	472
PaeR7I	CTCGAG	1 cut(s)	489
PagI	TCATGA	1 cut(s)	136
PcsI	WCGNNNNNNNCGW	1 cut(s)	487
PctI	GAATGC	1 cut(s)	565
PdmI	GAANNNNTTC	2 cut(s)	165, 729
PfeI	GAWTC	2 cut(s)	133, 618
PfoI	TCCNGGA	1 cut(s)	698
PkrI	GCNGC	3 cut(s)	259, 439, 712
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
Psp6I	CCWGG	1 cut(s)	698
PspGI	CCWGG	1 cut(s)	698
PspN4I	GGNNCC	2 cut(s)	85, 432
PspXI	VCTCGAGB	1 cut(s)	489
PsuI	RGATCY	1 cut(s)	72
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	4 cut(s)	289, 515, 534, 783
RsaNI	GTAC	4 cut(s)	288, 514, 533, 782
RseI	CAYNNNNRTG	1 cut(s)	359
SatI	GCNGC	3 cut(s)	258, 438, 711
Sau3AI	GATC	5 cut(s)	72, 180, 639, 648, 717
ScaI	AGTACT	1 cut(s)	534
SchI	GAGTC	1 cut(s)	235
ScrFI	CCNGG	1 cut(s)	700
SduI	GDGCHC	2 cut(s)	312, 634
SfaNI	GCATC	2 cut(s)	543, 795
Sfr274I	CTCGAG	1 cut(s)	489
SlaI	CTCGAG	1 cut(s)	489
SmiMI	CAYNNNNRTG	1 cut(s)	359
SmlI	CTYRAG	2 cut(s)	243, 489
SmoI	CTYRAG	2 cut(s)	243, 489
Sse9I	AATT	1 cut(s)	726
SspMI	CTAG	2 cut(s)	320, 814
StyD4I	CCNGG	1 cut(s)	698
TaaI	ACNGT	2 cut(s)	316, 369
TaqI	TCGA	2 cut(s)	402, 490
TasI	AATT	1 cut(s)	726
TatI	WGTACW	2 cut(s)	532, 781
TfiI	GAWTC	2 cut(s)	133, 618
TscAI	CASTG	3 cut(s)	30, 120, 319
TseI	GCWGC	3 cut(s)	257, 437, 710
TspDTI	ATGAA	4 cut(s)	77, 139, 158, 730
TspRI	CASTG	3 cut(s)	30, 120, 319
VneI	GTGCAC	1 cut(s)	308
XceI	RCATGY	1 cut(s)	472
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
XhoI	CTCGAG	1 cut(s)	489
XmnI	GAANNNNTTC	2 cut(s)	165, 729
XspI	CTAG	2 cut(s)	320, 814
ZrmI	AGTACT	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.