No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G32190 |
| fragaria_vesca | FvH4_2g28941 FvH4_2g28941 FvH4_2g28941 |
| malus_domestica | MD15G1126300.v1.1 |
| prunus_persica | Prupe.1G482200_v2.0.a1 Prupe.1G482200_v2.0.a1 Prupe.1G482200_v2.0.a1 Prupe.1G482200_v2.0.a1 Prupe.1G482200_v2.0.a1 |
| pyrus_communis | pycom15g11400 |
| rosa_chinensis | RchiOBHm_Chr6g0297771 |
| rosa_laevigata | RLG00000011563 |
| rosa_multiflora | Rmu_sc0002674.1_g000011 Rmu_sc0002674.1_g000014 |
| rosa_roxburghii | Rroxscaffold_7G00170210 Rroxscaffold_7G00179060 |
| rosa_rugosa | Rorug06G0275400 Rorug06G0275400 |
| rosa_samantha | Rh6AG385900 Rh6BG394500 Rh6CG400200 Rh6DG386700 |
| rosa_wichuraiana | Rw6G033640 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2350 |
| Acc16I | TGCGCA | 1 cut(s) | 1149 |
| Acc36I | ACCTGC | 1 cut(s) | 390 |
| AccBSI | CCGCTC | 1 cut(s) | 1216 |
| AccI | GTMKAC | 1 cut(s) | 496 |
| AciI | CCGC | 3 cut(s) | 514, 1216, 1880 |
| AclI | AACGTT | 1 cut(s) | 937 |
| AcoI | YGGCCR | 1 cut(s) | 2058 |
| AcsI | RAATTY | 2 cut(s) | 695, 1201 |
| AfaI | GTAC | 1 cut(s) | 2320 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 436, 2210 |
| AflII | CTTAAG | 1 cut(s) | 718 |
| AjnI | CCWGG | 5 cut(s) | 542, 897, 1043, 1509, 2292 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1268, 1300 |
| Alw21I | GWGCWC | 2 cut(s) | 781, 2144 |
| Alw26I | GTCTC | 4 cut(s) | 130, 256, 576, 739 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1420, 2271 |
| Ama87I | CYCGRG | 3 cut(s) | 115, 1023, 1097 |
| AoxI | GGCC | 5 cut(s) | 15, 357, 1398, 2058, 2178 |
| ApeKI | GCWGC | 5 cut(s) | 347, 596, 1768, 2084, 2105 |
| ApoI | RAATTY | 2 cut(s) | 695, 1201 |
| AspLEI | GCGC | 3 cut(s) | 352, 1150, 1210 |
| AspS9I | GGNCC | 3 cut(s) | 379, 1228, 2274 |
| AsuC2I | CCSGG | 1 cut(s) | 431 |
| AsuHPI | GGTGA | 6 cut(s) | 767, 1628, 1831, 1834, 2063, 2255 |
| AsuNHI | GCTAGC | 1 cut(s) | 1291 |
| AvaI | CYCGRG | 3 cut(s) | 115, 1023, 1097 |
| AvaII | GGWCC | 3 cut(s) | 379, 1228, 2274 |
| BalI | TGGCCA | 1 cut(s) | 2060 |
| BanII | GRGCYC | 1 cut(s) | 781 |
| Bbv12I | GWGCWC | 2 cut(s) | 781, 2144 |
| BbvI | GCAGC | 5 cut(s) | 334, 583, 1780, 2092, 2096 |
| BccI | CCATC | 1 cut(s) | 1819 |
| BceAI | ACGGC | 1 cut(s) | 1832 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 575, 609, 1675, 1709 |
| BciT130I | CCWGG | 5 cut(s) | 544, 899, 1045, 1511, 2294 |
| BclI | TGATCA | 1 cut(s) | 1539 |
| BcnI | CCSGG | 1 cut(s) | 431 |
| BcoDI | GTCTC | 4 cut(s) | 130, 256, 576, 739 |
| BfaI | CTAG | 7 cut(s) | 353, 635, 1292, 1406, 1442, 1778, 1877 |
| BfrI | CTTAAG | 1 cut(s) | 718 |
| BfuAI | ACCTGC | 1 cut(s) | 390 |
| BisI | GCNGC | 5 cut(s) | 348, 597, 1769, 2085, 2106 |
| BlpI | GCTNAGC | 1 cut(s) | 202 |
| BlsI | GCNGC | 5 cut(s) | 349, 598, 1770, 2086, 2107 |
| Bme1390I | CCNGG | 6 cut(s) | 431, 544, 899, 1045, 1511, 2294 |
| Bme18I | GGWCC | 3 cut(s) | 379, 1228, 2274 |
| BmeT110I | CYCGRG | 3 cut(s) | 115, 1023, 1097 |
| BmgT120I | GGNCC | 3 cut(s) | 379, 1228, 2274 |
| BmrFI | CCNGG | 6 cut(s) | 431, 544, 899, 1045, 1511, 2294 |
| BmsI | GCATC | 6 cut(s) | 379, 633, 1135, 1426, 1566, 2058 |
| BmtI | GCTAGC | 1 cut(s) | 1295 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1164, 1196 |
| BpmI | CTGGAG | 2 cut(s) | 1265, 2315 |
| Bpu10I | CCTNAGC | 1 cut(s) | 572 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 202 |
| BpuEI | CTTGAG | 9 cut(s) | 350, 362, 522, 803, 1159, 1232, 1943, 2099, 2142 |
| BpuMI | CCSGG | 1 cut(s) | 431 |
| BsaBI | GATNNNNATC | 1 cut(s) | 300 |
| BsaJI | CCNNGG | 7 cut(s) | 319, 543, 897, 960, 1044, 1944, 2016 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1367, 1397 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 436, 2210 |
| Bse1I | ACTGG | 1 cut(s) | 2112 |
| Bse3DI | GCAATG | 1 cut(s) | 1737 |
| Bse8I | GATNNNNATC | 1 cut(s) | 300 |
| BseBI | CCWGG | 5 cut(s) | 544, 899, 1045, 1511, 2294 |
| BseDI | CCNNGG | 7 cut(s) | 319, 543, 897, 960, 1044, 1944, 2016 |
| BseGI | GGATG | 4 cut(s) | 907, 1150, 1471, 1863 |
| BseJI | GATNNNNATC | 1 cut(s) | 300 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 436, 2210 |
| BseMI | GCAATG | 1 cut(s) | 1737 |
| BseMII | CTCAG | 7 cut(s) | 26, 140, 198, 216, 384, 1195, 1563 |
| BseNI | ACTGG | 1 cut(s) | 2112 |
| BseRI | GAGGAG | 5 cut(s) | 34, 455, 518, 800, 1274 |
| BseXI | GCAGC | 5 cut(s) | 334, 583, 1780, 2092, 2096 |
| BsgI | GTGCAG | 2 cut(s) | 368, 1904 |
| BshFI | GGCC | 5 cut(s) | 17, 359, 1400, 2060, 2180 |
| BsiHKAI | GWGCWC | 2 cut(s) | 781, 2144 |
| BsiHKCI | CYCGRG | 3 cut(s) | 115, 1023, 1097 |
| BsiSI | CCGG | 1 cut(s) | 430 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 436, 2210 |
| BsmAI | GTCTC | 4 cut(s) | 130, 256, 576, 739 |
| BsmBI | CGTCTC | 1 cut(s) | 576 |
| BsmI | GAATGC | 2 cut(s) | 110, 1732 |
| BsnI | GGCC | 5 cut(s) | 17, 359, 1400, 2060, 2180 |
| BsoBI | CYCGRG | 3 cut(s) | 115, 1023, 1097 |
| Bsp1286I | GDGCHC | 2 cut(s) | 781, 2144 |
| Bsp143I | GATC | 6 cut(s) | 301, 1539, 1552, 1914, 1980, 2053 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 202 |
| Bsp19I | CCATGG | 1 cut(s) | 960 |
| BspACI | CCGC | 3 cut(s) | 514, 1216, 1880 |
| BspANI | GGCC | 5 cut(s) | 17, 359, 1400, 2060, 2180 |
| BspCNI | CTCAG | 7 cut(s) | 25, 141, 199, 215, 385, 1194, 1564 |
| BspHI | TCATGA | 2 cut(s) | 972, 1789 |
| BspMI | ACCTGC | 1 cut(s) | 390 |
| BspOI | GCTAGC | 1 cut(s) | 1295 |
| BspQI | GCTCTTC | 1 cut(s) | 624 |
| BspTI | CTTAAG | 1 cut(s) | 718 |
| BsrBI | CCGCTC | 1 cut(s) | 1216 |
| BsrDI | GCAATG | 1 cut(s) | 1737 |
| BsrI | ACTGG | 1 cut(s) | 2112 |
| BssECI | CCNNGG | 7 cut(s) | 319, 543, 897, 960, 1044, 1944, 2016 |
| BssMI | GATC | 6 cut(s) | 301, 1539, 1552, 1914, 1980, 2053 |
| BssT1I | CCWWGG | 4 cut(s) | 319, 960, 1944, 2016 |
| Bst2UI | CCWGG | 5 cut(s) | 544, 899, 1045, 1511, 2294 |
| Bst4CI | ACNGT | 5 cut(s) | 931, 1715, 1991, 2151, 2197 |
| Bst6I | CTCTTC | 6 cut(s) | 92, 369, 549, 624, 876, 1905 |
| BstAFI | CTTAAG | 1 cut(s) | 718 |
| BstC8I | GCNNGC | 4 cut(s) | 326, 516, 1293, 2130 |
| BstDSI | CCRYGG | 1 cut(s) | 960 |
| BstF5I | GGATG | 4 cut(s) | 907, 1150, 1471, 1863 |
| BstHHI | GCGC | 3 cut(s) | 352, 1150, 1210 |
| BstKTI | GATC | 6 cut(s) | 304, 1542, 1555, 1917, 1983, 2056 |
| BstMAI | GTCTC | 4 cut(s) | 130, 256, 576, 739 |
| BstMBI | GATC | 6 cut(s) | 301, 1539, 1552, 1914, 1980, 2053 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 212, 356, 539, 1297, 2114 |
| BstNI | CCWGG | 5 cut(s) | 544, 899, 1045, 1511, 2294 |
| BstNSI | RCATGY | 1 cut(s) | 2331 |
| BstSCI | CCNGG | 6 cut(s) | 429, 542, 897, 1043, 1509, 2292 |
| BstV1I | GCAGC | 5 cut(s) | 334, 583, 1780, 2092, 2096 |
| BsuRI | GGCC | 5 cut(s) | 17, 359, 1400, 2060, 2180 |
| BtgI | CCRYGG | 1 cut(s) | 960 |
| BtsCI | GGATG | 4 cut(s) | 907, 1150, 1471, 1863 |
| BtsIMutI | CAGTG | 5 cut(s) | 1152, 1644, 1996, 2119, 2193 |
| BveI | ACCTGC | 1 cut(s) | 390 |
| Cac8I | GCNNGC | 4 cut(s) | 326, 516, 1293, 2130 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1420, 2271 |
| CciI | TCATGA | 2 cut(s) | 972, 1789 |
| CfoI | GCGC | 3 cut(s) | 352, 1150, 1210 |
| Cfr13I | GGNCC | 3 cut(s) | 379, 1228, 2274 |
| CseI | GACGC | 1 cut(s) | 635 |
| Csp6I | GTAC | 1 cut(s) | 2319 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1374, 1409 |
| CviAII | CATG | 9 cut(s) | 488, 961, 973, 1301, 1790, 1927, 2167, 2328, 2332 |
| CviQI | GTAC | 1 cut(s) | 2319 |
| DpnI | GATC | 6 cut(s) | 303, 1541, 1554, 1916, 1982, 2055 |
| DpnII | GATC | 6 cut(s) | 301, 1539, 1552, 1914, 1980, 2053 |
| DraI | TTTAAA | 1 cut(s) | 1903 |
| EaeI | YGGCCR | 1 cut(s) | 2058 |
| Eam1104I | CTCTTC | 6 cut(s) | 92, 369, 549, 624, 876, 1905 |
| EarI | CTCTTC | 6 cut(s) | 92, 369, 549, 624, 876, 1905 |
| Ecl136II | GAGCTC | 1 cut(s) | 779 |
| Eco130I | CCWWGG | 4 cut(s) | 319, 960, 1944, 2016 |
| Eco24I | GRGCYC | 1 cut(s) | 781 |
| Eco47I | GGWCC | 3 cut(s) | 379, 1228, 2274 |
| Eco53kI | GAGCTC | 1 cut(s) | 779 |
| Eco88I | CYCGRG | 3 cut(s) | 115, 1023, 1097 |
| EcoICRI | GAGCTC | 1 cut(s) | 779 |
| EcoO109I | RGGNCCY | 1 cut(s) | 379 |
| EcoRII | CCWGG | 5 cut(s) | 542, 897, 1043, 1509, 2292 |
| EcoT14I | CCWWGG | 4 cut(s) | 319, 960, 1944, 2016 |
| EcoT22I | ATGCAT | 2 cut(s) | 1302, 2333 |
| EcoT38I | GRGCYC | 1 cut(s) | 781 |
| ErhI | CCWWGG | 4 cut(s) | 319, 960, 1944, 2016 |
| Esp3I | CGTCTC | 1 cut(s) | 576 |
| FaeI | CATG | 9 cut(s) | 491, 964, 976, 1304, 1793, 1930, 2170, 2331, 2335 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 828, 860, 1311, 1343, 1542, 1574 |
| FatI | CATG | 9 cut(s) | 487, 960, 972, 1300, 1789, 1926, 2166, 2327, 2331 |
| FauI | CCCGC | 2 cut(s) | 507, 1209 |
| FbaI | TGATCA | 1 cut(s) | 1539 |
| FblI | GTMKAC | 1 cut(s) | 496 |
| Fnu4HI | GCNGC | 5 cut(s) | 348, 597, 1769, 2085, 2106 |
| FokI | GGATG | 4 cut(s) | 914, 1157, 1478, 1870 |
| FriOI | GRGCYC | 1 cut(s) | 781 |
| Fsp4HI | GCNGC | 5 cut(s) | 348, 597, 1769, 2085, 2106 |
| FspAI | RTGCGCAY | 1 cut(s) | 1149 |
| FspBI | CTAG | 7 cut(s) | 353, 635, 1292, 1406, 1442, 1778, 1877 |
| FspI | TGCGCA | 1 cut(s) | 1149 |
| GlaI | GCGC | 3 cut(s) | 351, 1149, 1209 |
| GluI | GCNGC | 5 cut(s) | 348, 597, 1769, 2085, 2106 |
| GsuI | CTGGAG | 2 cut(s) | 1265, 2315 |
| HaeIII | GGCC | 5 cut(s) | 17, 359, 1400, 2060, 2180 |
| HapII | CCGG | 1 cut(s) | 430 |
| HgaI | GACGC | 1 cut(s) | 635 |
| HhaI | GCGC | 3 cut(s) | 352, 1150, 1210 |
| Hin1II | CATG | 9 cut(s) | 491, 964, 976, 1304, 1793, 1930, 2170, 2331, 2335 |
| Hin6I | GCGC | 3 cut(s) | 350, 1148, 1208 |
| HinP1I | GCGC | 3 cut(s) | 350, 1148, 1208 |
| HincII | GTYRAC | 2 cut(s) | 1704, 2154 |
| HindII | GTYRAC | 2 cut(s) | 1704, 2154 |
| HindIII | AAGCTT | 9 cut(s) | 401, 474, 842, 914, 986, 1029, 1135, 1834, 2126 |
| HpaI | GTTAAC | 1 cut(s) | 2154 |
| HpaII | CCGG | 1 cut(s) | 430 |
| HphI | GGTGA | 6 cut(s) | 767, 1628, 1831, 1834, 2063, 2255 |
| Hpy166II | GTNNAC | 6 cut(s) | 85, 497, 1507, 1597, 1704, 2154 |
| Hpy8I | GTNNAC | 6 cut(s) | 85, 497, 1507, 1597, 1704, 2154 |
| HpyAV | CCTTC | 8 cut(s) | 49, 746, 784, 1576, 1607, 1610, 2216, 2330 |
| HpyCH4III | ACNGT | 5 cut(s) | 931, 1715, 1991, 2151, 2197 |
| HpyCH4IV | ACGT | 4 cut(s) | 454, 592, 937, 1920 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 212, 356, 539, 1297, 2114 |
| HpySE526I | ACGT | 4 cut(s) | 454, 592, 937, 1920 |
| Hsp92II | CATG | 9 cut(s) | 491, 964, 976, 1304, 1793, 1930, 2170, 2331, 2335 |
| HspAI | GCGC | 3 cut(s) | 350, 1148, 1208 |
| Ksp22I | TGATCA | 1 cut(s) | 1539 |
| KspAI | GTTAAC | 1 cut(s) | 2154 |
| Kzo9I | GATC | 6 cut(s) | 301, 1539, 1552, 1914, 1980, 2053 |
| LguI | GCTCTTC | 1 cut(s) | 624 |
| LmnI | GCTCC | 4 cut(s) | 505, 1048, 1288, 1948 |
| Lsp1109I | GCAGC | 5 cut(s) | 334, 583, 1780, 2092, 2096 |
| LweI | GCATC | 6 cut(s) | 379, 633, 1135, 1426, 1566, 2058 |
| MaeI | CTAG | 7 cut(s) | 353, 635, 1292, 1406, 1442, 1778, 1877 |
| MaeII | ACGT | 4 cut(s) | 454, 592, 937, 1920 |
| MaeIII | GTNAC | 3 cut(s) | 708, 1516, 1642 |
| MalI | GATC | 6 cut(s) | 303, 1541, 1554, 1916, 1982, 2055 |
| MbiI | CCGCTC | 1 cut(s) | 1216 |
| MboI | GATC | 6 cut(s) | 301, 1539, 1552, 1914, 1980, 2053 |
| MfeI | CAATTG | 1 cut(s) | 1085 |
| MhlI | GDGCHC | 2 cut(s) | 781, 2144 |
| MlsI | TGGCCA | 1 cut(s) | 2060 |
| MluNI | TGGCCA | 1 cut(s) | 2060 |
| MlyI | GAGTC | 7 cut(s) | 109, 218, 341, 502, 1391, 1754, 2040 |
| MmeI | TCCRAC | 1 cut(s) | 1266 |
| Mox20I | TGGCCA | 1 cut(s) | 2060 |
| Mph1103I | ATGCAT | 2 cut(s) | 1302, 2333 |
| MscI | TGGCCA | 1 cut(s) | 2060 |
| MseI | TTAA | 8 cut(s) | 426, 560, 719, 918, 1740, 1832, 1902, 2153 |
| MslI | CAYNNNNRTG | 4 cut(s) | 977, 2066, 2198, 2326 |
| Msp20I | TGGCCA | 1 cut(s) | 2060 |
| MspA1I | CMGCKG | 1 cut(s) | 206 |
| MspCI | CTTAAG | 1 cut(s) | 718 |
| MspI | CCGG | 1 cut(s) | 430 |
| MspR9I | CCNGG | 6 cut(s) | 431, 544, 899, 1045, 1511, 2294 |
| MunI | CAATTG | 1 cut(s) | 1085 |
| Mva1269I | GAATGC | 2 cut(s) | 110, 1732 |
| MvaI | CCWGG | 5 cut(s) | 544, 899, 1045, 1511, 2294 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 212, 356, 539, 1297, 2114 |
| NciI | CCSGG | 1 cut(s) | 431 |
| NcoI | CCATGG | 1 cut(s) | 960 |
| NdeII | GATC | 6 cut(s) | 301, 1539, 1552, 1914, 1980, 2053 |
| NheI | GCTAGC | 1 cut(s) | 1291 |
| NlaIII | CATG | 9 cut(s) | 491, 964, 976, 1304, 1793, 1930, 2170, 2331, 2335 |
| NmuCI | GTSAC | 2 cut(s) | 708, 1642 |
| NsbI | TGCGCA | 1 cut(s) | 1149 |
| NsiI | ATGCAT | 2 cut(s) | 1302, 2333 |
| NspI | RCATGY | 1 cut(s) | 2331 |
| PaeR7I | CTCGAG | 1 cut(s) | 1097 |
| PagI | TCATGA | 2 cut(s) | 972, 1789 |
| PciSI | GCTCTTC | 1 cut(s) | 624 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2307 |
| PctI | GAATGC | 2 cut(s) | 110, 1732 |
| PfeI | GAWTC | 4 cut(s) | 28, 1005, 1411, 2307 |
| PfoI | TCCNGGA | 1 cut(s) | 2292 |
| PkrI | GCNGC | 5 cut(s) | 349, 598, 1770, 2086, 2107 |
| PleI | GAGTC | 7 cut(s) | 108, 217, 340, 501, 1390, 1754, 2039 |
| PpsI | GAGTC | 7 cut(s) | 108, 217, 340, 501, 1390, 1754, 2039 |
| PpuMI | RGGWCCY | 1 cut(s) | 379 |
| PsiI | TTATAA | 1 cut(s) | 2350 |
| Psp124BI | GAGCTC | 1 cut(s) | 781 |
| Psp1406I | AACGTT | 1 cut(s) | 937 |
| Psp5II | RGGWCCY | 1 cut(s) | 379 |
| Psp6I | CCWGG | 5 cut(s) | 542, 897, 1043, 1509, 2292 |
| PspGI | CCWGG | 5 cut(s) | 542, 897, 1043, 1509, 2292 |
| PspPI | GGNCC | 3 cut(s) | 379, 1228, 2274 |
| PspPPI | RGGWCCY | 1 cut(s) | 379 |
| PspXI | VCTCGAGB | 1 cut(s) | 1097 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1420, 2271 |
| PvuII | CAGCTG | 1 cut(s) | 206 |
| RsaI | GTAC | 1 cut(s) | 2320 |
| RsaNI | GTAC | 1 cut(s) | 2319 |
| RseI | CAYNNNNRTG | 4 cut(s) | 977, 2066, 2198, 2326 |
| SacI | GAGCTC | 1 cut(s) | 781 |
| SapI | GCTCTTC | 1 cut(s) | 624 |
| SaqAI | TTAA | 8 cut(s) | 426, 560, 719, 918, 1740, 1832, 1902, 2153 |
| SatI | GCNGC | 5 cut(s) | 348, 597, 1769, 2085, 2106 |
| Sau3AI | GATC | 6 cut(s) | 301, 1539, 1552, 1914, 1980, 2053 |
| Sau96I | GGNCC | 3 cut(s) | 379, 1228, 2274 |
| SchI | GAGTC | 7 cut(s) | 109, 218, 341, 502, 1391, 1754, 2040 |
| ScrFI | CCNGG | 6 cut(s) | 431, 544, 899, 1045, 1511, 2294 |
| SduI | GDGCHC | 2 cut(s) | 781, 2144 |
| SfaNI | GCATC | 6 cut(s) | 379, 633, 1135, 1426, 1566, 2058 |
| Sfr274I | CTCGAG | 1 cut(s) | 1097 |
| SinI | GGWCC | 3 cut(s) | 379, 1228, 2274 |
| SlaI | CTCGAG | 1 cut(s) | 1097 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 977, 2066, 2198, 2326 |
| SsiI | CCGC | 3 cut(s) | 514, 1216, 1880 |
| SspMI | CTAG | 7 cut(s) | 353, 635, 1292, 1406, 1442, 1778, 1877 |
| SstI | GAGCTC | 1 cut(s) | 781 |
| StyD4I | CCNGG | 6 cut(s) | 429, 542, 897, 1043, 1509, 2292 |
| StyI | CCWWGG | 4 cut(s) | 319, 960, 1944, 2016 |
| TaaI | ACNGT | 5 cut(s) | 931, 1715, 1991, 2151, 2197 |
| TaiI | ACGT | 4 cut(s) | 457, 595, 940, 1923 |
| TaqI | TCGA | 4 cut(s) | 228, 1008, 1098, 1486 |
| TaqII | GACCGA | 1 cut(s) | 1216 |
| TfiI | GAWTC | 4 cut(s) | 28, 1005, 1411, 2307 |
| Tru1I | TTAA | 8 cut(s) | 426, 560, 719, 918, 1740, 1832, 1902, 2153 |
| Tru9I | TTAA | 8 cut(s) | 426, 560, 719, 918, 1740, 1832, 1902, 2153 |
| TscAI | CASTG | 5 cut(s) | 1159, 1651, 1996, 2119, 2200 |
| TseFI | GTSAC | 2 cut(s) | 708, 1642 |
| TseI | GCWGC | 5 cut(s) | 347, 596, 1768, 2084, 2105 |
| Tsp45I | GTSAC | 2 cut(s) | 708, 1642 |
| TspDTI | ATGAA | 6 cut(s) | 918, 961, 969, 989, 1482, 1874 |
| TspGWI | ACGGA | 4 cut(s) | 1300, 1815, 1870, 2159 |
| TspRI | CASTG | 5 cut(s) | 1159, 1651, 1996, 2119, 2200 |
| Vha464I | CTTAAG | 1 cut(s) | 718 |
| VpaK11BI | GGWCC | 3 cut(s) | 379, 1228, 2274 |
| XapI | RAATTY | 2 cut(s) | 695, 1201 |
| XbaI | TCTAGA | 1 cut(s) | 1441 |
| XceI | RCATGY | 1 cut(s) | 2331 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 958, 1051 |
| XhoI | CTCGAG | 1 cut(s) | 1097 |
| XmiI | GTMKAC | 1 cut(s) | 496 |
| XspI | CTAG | 7 cut(s) | 353, 635, 1292, 1406, 1442, 1778, 1877 |
| Zsp2I | ATGCAT | 2 cut(s) | 1302, 2333 |