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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G32190 |
| fragaria_vesca | FvH4_2g28941 FvH4_2g28941 FvH4_2g28941 |
| malus_domestica | MD15G1126300.v1.1 |
| prunus_persica | Prupe.1G482200_v2.0.a1 Prupe.1G482200_v2.0.a1 Prupe.1G482200_v2.0.a1 Prupe.1G482200_v2.0.a1 Prupe.1G482200_v2.0.a1 |
| pyrus_communis | pycom15g11400 |
| rosa_chinensis | RchiOBHm_Chr6g0297771 |
| rosa_laevigata | RLG00000011563 |
| rosa_multiflora | Rmu_sc0002674.1_g000011 Rmu_sc0002674.1_g000014 |
| rosa_roxburghii | Rroxscaffold_7G00170210 Rroxscaffold_7G00179060 |
| rosa_rugosa | Rorug06G0275400 Rorug06G0275400 |
| rosa_samantha | Rh6AG385900 Rh6BG394500 Rh6CG400200 Rh6DG386700 |
| rosa_wichuraiana | Rw6G033640 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 717 |
| Acc16I | TGCGCA | 1 cut(s) | 1355 |
| Acc36I | ACCTGC | 3 cut(s) | 217, 468, 717 |
| AccBSI | CCGCTC | 1 cut(s) | 1426 |
| AccII | CGCG | 2 cut(s) | 935, 937 |
| AccIII | TCCGGA | 1 cut(s) | 36 |
| AclWI | GGATC | 1 cut(s) | 2183 |
| AcsI | RAATTY | 2 cut(s) | 274, 1340 |
| AcuI | CTGAAG | 1 cut(s) | 545 |
| AfaI | GTAC | 1 cut(s) | 1274 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 126, 430, 996, 2257 |
| AflII | CTTAAG | 2 cut(s) | 1831, 1895 |
| AflIII | ACRYGT | 1 cut(s) | 1591 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 997 |
| AjiI | CACGTC | 1 cut(s) | 994 |
| AjnI | CCWGG | 1 cut(s) | 536 |
| Alw21I | GWGCWC | 3 cut(s) | 74, 411, 2095 |
| Alw26I | GTCTC | 3 cut(s) | 1906, 1999, 2022 |
| Alw44I | GTGCAC | 1 cut(s) | 2091 |
| AlwI | GGATC | 1 cut(s) | 2183 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 253, 1646, 2309 |
| Ama87I | CYCGRG | 2 cut(s) | 224, 1907 |
| Aor13HI | TCCGGA | 1 cut(s) | 36 |
| AoxI | GGCC | 4 cut(s) | 3, 534, 2154, 2306 |
| ApaLI | GTGCAC | 1 cut(s) | 2091 |
| ApoI | RAATTY | 2 cut(s) | 274, 1340 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 804 |
| AspLEI | GCGC | 4 cut(s) | 937, 1204, 1356, 1999 |
| AspS9I | GGNCC | 5 cut(s) | 39, 550, 1546, 1870, 2306 |
| AsuC2I | CCSGG | 1 cut(s) | 2251 |
| AsuHPI | GGTGA | 2 cut(s) | 698, 2245 |
| AvaI | CYCGRG | 2 cut(s) | 224, 1907 |
| AvaII | GGWCC | 4 cut(s) | 39, 550, 1546, 1870 |
| AxyI | CCTNAGG | 1 cut(s) | 288 |
| BaeGI | GKGCMC | 1 cut(s) | 2095 |
| BauI | CACGAG | 1 cut(s) | 1733 |
| BbsI | GAAGAC | 2 cut(s) | 1968, 2024 |
| Bbv12I | GWGCWC | 3 cut(s) | 74, 411, 2095 |
| BccI | CCATC | 3 cut(s) | 1706, 1766, 1894 |
| BciT130I | CCWGG | 1 cut(s) | 538 |
| BciVI | GTATCC | 1 cut(s) | 1423 |
| BcnI | CCSGG | 1 cut(s) | 2251 |
| BcoDI | GTCTC | 3 cut(s) | 1906, 1999, 2022 |
| BfaI | CTAG | 7 cut(s) | 302, 1038, 1322, 1856, 1916, 2069, 2193 |
| BfmI | CTRYAG | 4 cut(s) | 465, 1364, 2313, 2338 |
| BfrI | CTTAAG | 2 cut(s) | 1831, 1895 |
| BfuAI | ACCTGC | 3 cut(s) | 217, 468, 717 |
| BfuI | GTATCC | 1 cut(s) | 1423 |
| BlpI | GCTNAGC | 1 cut(s) | 1395 |
| Bme1390I | CCNGG | 2 cut(s) | 538, 2251 |
| Bme18I | GGWCC | 4 cut(s) | 39, 550, 1546, 1870 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 997 |
| BmeT110I | CYCGRG | 2 cut(s) | 224, 1907 |
| BmgBI | CACGTC | 1 cut(s) | 994 |
| BmgT120I | GGNCC | 5 cut(s) | 39, 550, 1546, 1870, 2306 |
| BmiI | GGNNCC | 1 cut(s) | 1871 |
| BmrFI | CCNGG | 2 cut(s) | 538, 2251 |
| BmrI | ACTGGG | 1 cut(s) | 2018 |
| BmsI | GCATC | 7 cut(s) | 373, 932, 1040, 1129, 1291, 1515, 1593 |
| BmuI | ACTGGG | 1 cut(s) | 2018 |
| BpiI | GAAGAC | 2 cut(s) | 1968, 2024 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1259, 1291, 1261, 1293 |
| BpmI | CTGGAG | 1 cut(s) | 461 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1175 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1395 |
| BpuEI | CTTGAG | 6 cut(s) | 163, 344, 1511, 1559, 2075, 2164 |
| BpuMI | CCSGG | 1 cut(s) | 2251 |
| BsaJI | CCNNGG | 4 cut(s) | 120, 699, 1221, 2459 |
| BsaWI | WCCGGW | 1 cut(s) | 36 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 126, 430, 996, 2257 |
| Bse1I | ACTGG | 3 cut(s) | 258, 2013, 2088 |
| Bse21I | CCTNAGG | 1 cut(s) | 288 |
| Bse3DI | GCAATG | 1 cut(s) | 416 |
| BseAI | TCCGGA | 1 cut(s) | 36 |
| BseBI | CCWGG | 1 cut(s) | 538 |
| BseDI | CCNNGG | 4 cut(s) | 120, 699, 1221, 2459 |
| BseGI | GGATG | 6 cut(s) | 283, 298, 388, 923, 1456, 1711 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 126, 430, 996, 2257 |
| BseMI | GCAATG | 1 cut(s) | 416 |
| BseMII | CTCAG | 8 cut(s) | 302, 545, 1031, 1413, 1797, 1877, 1967, 2220 |
| BseNI | ACTGG | 3 cut(s) | 258, 2013, 2088 |
| BseRI | GAGGAG | 3 cut(s) | 34, 449, 1904 |
| BseSI | GKGCMC | 1 cut(s) | 2095 |
| BsgI | GTGCAG | 2 cut(s) | 579, 2322 |
| Bsh1236I | CGCG | 2 cut(s) | 935, 937 |
| BshFI | GGCC | 4 cut(s) | 5, 536, 2156, 2308 |
| BsiHKAI | GWGCWC | 3 cut(s) | 74, 411, 2095 |
| BsiHKCI | CYCGRG | 2 cut(s) | 224, 1907 |
| BsiSI | CCGG | 2 cut(s) | 37, 2251 |
| BslFI | GGGAC | 4 cut(s) | 866, 1838, 1883, 2382 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 126, 430, 996, 2257 |
| BsmAI | GTCTC | 3 cut(s) | 1906, 1999, 2022 |
| BsmFI | GGGAC | 4 cut(s) | 866, 1838, 1883, 2382 |
| BsmI | GAATGC | 1 cut(s) | 1480 |
| BsnI | GGCC | 4 cut(s) | 5, 536, 2156, 2308 |
| BsoBI | CYCGRG | 2 cut(s) | 224, 1907 |
| Bsp1286I | GDGCHC | 3 cut(s) | 74, 411, 2095 |
| Bsp13I | TCCGGA | 1 cut(s) | 36 |
| Bsp143I | GATC | 7 cut(s) | 155, 331, 577, 1054, 1166, 1972, 2188 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1395 |
| Bsp19I | CCATGG | 1 cut(s) | 1221 |
| BspANI | GGCC | 4 cut(s) | 5, 536, 2156, 2308 |
| BspCNI | CTCAG | 8 cut(s) | 301, 544, 1030, 1414, 1798, 1876, 1968, 2221 |
| BspEI | TCCGGA | 1 cut(s) | 36 |
| BspFNI | CGCG | 2 cut(s) | 935, 937 |
| BspLI | GGNNCC | 1 cut(s) | 1871 |
| BspMAI | CTGCAG | 4 cut(s) | 469, 1368, 2317, 2342 |
| BspMI | ACCTGC | 3 cut(s) | 217, 468, 717 |
| BspPI | GGATC | 1 cut(s) | 2183 |
| BspQI | GCTCTTC | 2 cut(s) | 142, 252 |
| BspTI | CTTAAG | 2 cut(s) | 1831, 1895 |
| BsrBI | CCGCTC | 1 cut(s) | 1426 |
| BsrDI | GCAATG | 1 cut(s) | 416 |
| BsrI | ACTGG | 3 cut(s) | 258, 2013, 2088 |
| BssECI | CCNNGG | 4 cut(s) | 120, 699, 1221, 2459 |
| BssMI | GATC | 7 cut(s) | 155, 331, 577, 1054, 1166, 1972, 2188 |
| BssSI | CACGAG | 1 cut(s) | 1733 |
| BssT1I | CCWWGG | 2 cut(s) | 699, 1221 |
| Bst2BI | CACGAG | 1 cut(s) | 1733 |
| Bst2UI | CCWGG | 1 cut(s) | 538 |
| Bst4CI | ACNGT | 6 cut(s) | 413, 600, 1538, 1654, 2443, 2460 |
| Bst6I | CTCTTC | 6 cut(s) | 52, 142, 252, 615, 964, 1947 |
| BstAFI | CTTAAG | 2 cut(s) | 1831, 1895 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 69, 2090, 2309 |
| BstC8I | GCNNGC | 5 cut(s) | 74, 510, 1401, 2140, 2310 |
| BstDSI | CCRYGG | 3 cut(s) | 120, 1221, 2459 |
| BstF5I | GGATG | 6 cut(s) | 283, 298, 388, 923, 1456, 1711 |
| BstFNI | CGCG | 2 cut(s) | 935, 937 |
| BstHHI | GCGC | 4 cut(s) | 937, 1204, 1356, 1999 |
| BstKTI | GATC | 7 cut(s) | 158, 334, 580, 1057, 1169, 1975, 2191 |
| BstMAI | GTCTC | 3 cut(s) | 1906, 1999, 2022 |
| BstMBI | GATC | 7 cut(s) | 155, 331, 577, 1054, 1166, 1972, 2188 |
| BstNI | CCWGG | 1 cut(s) | 538 |
| BstNSI | RCATGY | 1 cut(s) | 1595 |
| BstSCI | CCNGG | 2 cut(s) | 536, 2249 |
| BstSFI | CTRYAG | 4 cut(s) | 465, 1364, 2313, 2338 |
| BstSLI | GKGCMC | 1 cut(s) | 2095 |
| BstUI | CGCG | 2 cut(s) | 935, 937 |
| BstV2I | GAAGAC | 2 cut(s) | 1968, 2024 |
| Bsu36I | CCTNAGG | 1 cut(s) | 288 |
| BsuI | GTATCC | 1 cut(s) | 1423 |
| BsuRI | GGCC | 4 cut(s) | 5, 536, 2156, 2308 |
| BtgI | CCRYGG | 3 cut(s) | 120, 1221, 2459 |
| BtrI | CACGTC | 1 cut(s) | 994 |
| BtsCI | GGATG | 6 cut(s) | 283, 298, 388, 923, 1456, 1711 |
| BtsIMutI | CAGTG | 2 cut(s) | 409, 2095 |
| BveI | ACCTGC | 3 cut(s) | 217, 468, 717 |
| Cac8I | GCNNGC | 5 cut(s) | 74, 510, 1401, 2140, 2310 |
| CaiI | CAGNNNCTG | 3 cut(s) | 253, 1646, 2309 |
| CfoI | GCGC | 4 cut(s) | 937, 1204, 1356, 1999 |
| Cfr13I | GGNCC | 5 cut(s) | 39, 550, 1546, 1870, 2306 |
| CseI | GACGC | 1 cut(s) | 1973 |
| Csp6I | GTAC | 1 cut(s) | 1273 |
| CviAII | CATG | 9 cut(s) | 779, 824, 1222, 1592, 1600, 1726, 2375, 2401, 2479 |
| CviQI | GTAC | 1 cut(s) | 1273 |
| DpnI | GATC | 7 cut(s) | 157, 333, 579, 1056, 1168, 1974, 2190 |
| DpnII | GATC | 7 cut(s) | 155, 331, 577, 1054, 1166, 1972, 2188 |
| DriI | GACNNNNNGTC | 1 cut(s) | 997 |
| Eam1104I | CTCTTC | 6 cut(s) | 52, 142, 252, 615, 964, 1947 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 997 |
| EarI | CTCTTC | 6 cut(s) | 52, 142, 252, 615, 964, 1947 |
| Eco130I | CCWWGG | 2 cut(s) | 699, 1221 |
| Eco147I | AGGCCT | 1 cut(s) | 536 |
| Eco47I | GGWCC | 4 cut(s) | 39, 550, 1546, 1870 |
| Eco57I | CTGAAG | 1 cut(s) | 545 |
| Eco81I | CCTNAGG | 1 cut(s) | 288 |
| Eco88I | CYCGRG | 2 cut(s) | 224, 1907 |
| EcoO109I | RGGNCCY | 3 cut(s) | 550, 1870, 2306 |
| EcoRII | CCWGG | 1 cut(s) | 536 |
| EcoT14I | CCWWGG | 2 cut(s) | 699, 1221 |
| EcoT22I | ATGCAT | 1 cut(s) | 1993 |
| ErhI | CCWWGG | 2 cut(s) | 699, 1221 |
| FaeI | CATG | 9 cut(s) | 782, 827, 1225, 1595, 1603, 1729, 2378, 2404, 2482 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1050, 1082 |
| FaqI | GGGAC | 4 cut(s) | 866, 1838, 1883, 2382 |
| FatI | CATG | 9 cut(s) | 778, 823, 1221, 1591, 1599, 1725, 2374, 2400, 2478 |
| FauI | CCCGC | 1 cut(s) | 1419 |
| FokI | GGATG | 6 cut(s) | 270, 305, 395, 910, 1463, 1718 |
| FspBI | CTAG | 7 cut(s) | 302, 1038, 1322, 1856, 1916, 2069, 2193 |
| FspI | TGCGCA | 1 cut(s) | 1355 |
| GlaI | GCGC | 4 cut(s) | 936, 1203, 1355, 1998 |
| GsuI | CTGGAG | 1 cut(s) | 461 |
| HaeIII | GGCC | 4 cut(s) | 5, 536, 2156, 2308 |
| HapII | CCGG | 2 cut(s) | 37, 2251 |
| HgaI | GACGC | 1 cut(s) | 1973 |
| HhaI | GCGC | 4 cut(s) | 937, 1204, 1356, 1999 |
| Hin1II | CATG | 9 cut(s) | 782, 827, 1225, 1595, 1603, 1729, 2378, 2404, 2482 |
| Hin6I | GCGC | 4 cut(s) | 935, 1202, 1354, 1997 |
| HinP1I | GCGC | 4 cut(s) | 935, 1202, 1354, 1997 |
| HindIII | AAGCTT | 5 cut(s) | 557, 1064, 1172, 1487, 2045 |
| HinfI | GANTC | 9 cut(s) | 81, 217, 326, 695, 754, 1376, 1712, 1814, 2431 |
| HpaII | CCGG | 2 cut(s) | 37, 2251 |
| HphI | GGTGA | 2 cut(s) | 698, 2245 |
| Hpy166II | GTNNAC | 2 cut(s) | 1597, 2093 |
| Hpy8I | GTNNAC | 2 cut(s) | 1597, 2093 |
| Hpy99I | CGWCG | 1 cut(s) | 995 |
| HpyAV | CCTTC | 4 cut(s) | 16, 358, 1096, 1450 |
| HpyCH4III | ACNGT | 6 cut(s) | 413, 600, 1538, 1654, 2443, 2460 |
| HpyCH4IV | ACGT | 3 cut(s) | 993, 1115, 1210 |
| HpySE526I | ACGT | 3 cut(s) | 993, 1115, 1210 |
| Hsp92II | CATG | 9 cut(s) | 782, 827, 1225, 1595, 1603, 1729, 2378, 2404, 2482 |
| HspAI | GCGC | 4 cut(s) | 935, 1202, 1354, 1997 |
| Kpn2I | TCCGGA | 1 cut(s) | 36 |
| Kzo9I | GATC | 7 cut(s) | 155, 331, 577, 1054, 1166, 1972, 2188 |
| LguI | GCTCTTC | 2 cut(s) | 142, 252 |
| LmnI | GCTCC | 5 cut(s) | 197, 436, 442, 1231, 1891 |
| LweI | GCATC | 7 cut(s) | 373, 932, 1040, 1129, 1291, 1515, 1593 |
| MaeI | CTAG | 7 cut(s) | 302, 1038, 1322, 1856, 1916, 2069, 2193 |
| MaeII | ACGT | 3 cut(s) | 993, 1115, 1210 |
| MaeIII | GTNAC | 5 cut(s) | 188, 1211, 2183, 2233, 2386 |
| MalI | GATC | 7 cut(s) | 157, 333, 579, 1056, 1168, 1974, 2190 |
| MbiI | CCGCTC | 1 cut(s) | 1426 |
| MboI | GATC | 7 cut(s) | 155, 331, 577, 1054, 1166, 1972, 2188 |
| MfeI | CAATTG | 1 cut(s) | 1943 |
| MhlI | GDGCHC | 3 cut(s) | 74, 411, 2095 |
| MlyI | GAGTC | 3 cut(s) | 335, 1385, 1721 |
| MmeI | TCCRAC | 1 cut(s) | 1359 |
| Mph1103I | ATGCAT | 1 cut(s) | 1993 |
| MroI | TCCGGA | 1 cut(s) | 36 |
| MroXI | GAANNNNTTC | 1 cut(s) | 804 |
| MseI | TTAA | 7 cut(s) | 309, 903, 1124, 1739, 1832, 1896, 2225 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2201 |
| MspA1I | CMGCKG | 2 cut(s) | 1766, 2240 |
| MspCI | CTTAAG | 2 cut(s) | 1831, 1895 |
| MspI | CCGG | 2 cut(s) | 37, 2251 |
| MspR9I | CCNGG | 2 cut(s) | 538, 2251 |
| MunI | CAATTG | 1 cut(s) | 1943 |
| Mva1269I | GAATGC | 1 cut(s) | 1480 |
| MvaI | CCWGG | 1 cut(s) | 538 |
| MvnI | CGCG | 2 cut(s) | 935, 937 |
| NciI | CCSGG | 1 cut(s) | 2251 |
| NcoI | CCATGG | 1 cut(s) | 1221 |
| NdeII | GATC | 7 cut(s) | 155, 331, 577, 1054, 1166, 1972, 2188 |
| NlaIII | CATG | 9 cut(s) | 782, 827, 1225, 1595, 1603, 1729, 2378, 2404, 2482 |
| NlaIV | GGNNCC | 1 cut(s) | 1871 |
| NmuCI | GTSAC | 4 cut(s) | 188, 1211, 2233, 2386 |
| NsbI | TGCGCA | 1 cut(s) | 1355 |
| NsiI | ATGCAT | 1 cut(s) | 1993 |
| NspI | RCATGY | 1 cut(s) | 1595 |
| PaeR7I | CTCGAG | 1 cut(s) | 224 |
| PaqCI | CACCTGC | 1 cut(s) | 717 |
| PceI | AGGCCT | 1 cut(s) | 536 |
| PciI | ACATGT | 1 cut(s) | 1591 |
| PciSI | GCTCTTC | 2 cut(s) | 142, 252 |
| PctI | GAATGC | 1 cut(s) | 1480 |
| PdmI | GAANNNNTTC | 1 cut(s) | 804 |
| PfeI | GAWTC | 6 cut(s) | 81, 217, 695, 754, 1814, 2431 |
| PleI | GAGTC | 3 cut(s) | 334, 1384, 1720 |
| PpsI | GAGTC | 3 cut(s) | 334, 1384, 1720 |
| PpuMI | RGGWCCY | 2 cut(s) | 550, 1870 |
| PscI | ACATGT | 1 cut(s) | 1591 |
| Psp5II | RGGWCCY | 2 cut(s) | 550, 1870 |
| Psp6I | CCWGG | 1 cut(s) | 536 |
| PspGI | CCWGG | 1 cut(s) | 536 |
| PspN4I | GGNNCC | 1 cut(s) | 1871 |
| PspPI | GGNCC | 5 cut(s) | 39, 550, 1546, 1870, 2306 |
| PspPPI | RGGWCCY | 2 cut(s) | 550, 1870 |
| PstI | CTGCAG | 4 cut(s) | 469, 1368, 2317, 2342 |
| PstNI | CAGNNNCTG | 3 cut(s) | 253, 1646, 2309 |
| PvuII | CAGCTG | 1 cut(s) | 1766 |
| RsaI | GTAC | 1 cut(s) | 1274 |
| RsaNI | GTAC | 1 cut(s) | 1273 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2201 |
| SapI | GCTCTTC | 2 cut(s) | 142, 252 |
| SaqAI | TTAA | 7 cut(s) | 309, 903, 1124, 1739, 1832, 1896, 2225 |
| Sau3AI | GATC | 7 cut(s) | 155, 331, 577, 1054, 1166, 1972, 2188 |
| Sau96I | GGNCC | 5 cut(s) | 39, 550, 1546, 1870, 2306 |
| SchI | GAGTC | 3 cut(s) | 335, 1385, 1721 |
| ScrFI | CCNGG | 2 cut(s) | 538, 2251 |
| SduI | GDGCHC | 3 cut(s) | 74, 411, 2095 |
| SfaNI | GCATC | 7 cut(s) | 373, 932, 1040, 1129, 1291, 1515, 1593 |
| SfcI | CTRYAG | 4 cut(s) | 465, 1364, 2313, 2338 |
| Sfr274I | CTCGAG | 1 cut(s) | 224 |
| SinI | GGWCC | 4 cut(s) | 39, 550, 1546, 1870 |
| SlaI | CTCGAG | 1 cut(s) | 224 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2201 |
| SmlI | CTYRAG | 9 cut(s) | 142, 224, 323, 1490, 1574, 1831, 1895, 2054, 2143 |
| SmoI | CTYRAG | 9 cut(s) | 142, 224, 323, 1490, 1574, 1831, 1895, 2054, 2143 |
| SseBI | AGGCCT | 1 cut(s) | 536 |
| SspI | AATATT | 1 cut(s) | 1637 |
| SspMI | CTAG | 7 cut(s) | 302, 1038, 1322, 1856, 1916, 2069, 2193 |
| StuI | AGGCCT | 1 cut(s) | 536 |
| StyD4I | CCNGG | 2 cut(s) | 536, 2249 |
| StyI | CCWWGG | 2 cut(s) | 699, 1221 |
| TaaI | ACNGT | 6 cut(s) | 413, 600, 1538, 1654, 2443, 2460 |
| TaiI | ACGT | 3 cut(s) | 996, 1118, 1213 |
| TaqI | TCGA | 4 cut(s) | 154, 179, 225, 2040 |
| TauI | GCSGC | 4 cut(s) | 17, 20, 23, 593 |
| TfiI | GAWTC | 6 cut(s) | 81, 217, 695, 754, 1814, 2431 |
| Tru1I | TTAA | 7 cut(s) | 309, 903, 1124, 1739, 1832, 1896, 2225 |
| Tru9I | TTAA | 7 cut(s) | 309, 903, 1124, 1739, 1832, 1896, 2225 |
| TscAI | CASTG | 2 cut(s) | 416, 2095 |
| TseFI | GTSAC | 4 cut(s) | 188, 1211, 2233, 2386 |
| Tsp45I | GTSAC | 4 cut(s) | 188, 1211, 2233, 2386 |
| TspGWI | ACGGA | 4 cut(s) | 137, 1678, 2175, 2384 |
| TspRI | CASTG | 2 cut(s) | 416, 2095 |
| Vha464I | CTTAAG | 2 cut(s) | 1831, 1895 |
| VneI | GTGCAC | 1 cut(s) | 2091 |
| VpaK11BI | GGWCC | 4 cut(s) | 39, 550, 1546, 1870 |
| XapI | RAATTY | 2 cut(s) | 274, 1340 |
| XbaI | TCTAGA | 1 cut(s) | 1037 |
| XceI | RCATGY | 1 cut(s) | 1595 |
| XhoI | CTCGAG | 1 cut(s) | 224 |
| XmnI | GAANNNNTTC | 1 cut(s) | 804 |
| XspI | CTAG | 7 cut(s) | 302, 1038, 1322, 1856, 1916, 2069, 2193 |
| Zsp2I | ATGCAT | 1 cut(s) | 1993 |