Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001247

Physical Location & Seq

Genomic Coordinates Forward (+)

42264296 .. 42267912

Gene Structure 3617 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0275400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAAAATAAAAGCACAAGAGTTAAGGGATCAAACACGCAAGAAAAGTAAAGAAGAAGAAAAGAAACTGGAATTACAAATGGAACGAGAAAGAGAGAAGGAGAGGATTCGATCTGGTAAGGAACTCATGGAAGCAAAGCAAATCTTAGAAGACAATGAAAGAAAACGTAATATAGCATTTCGGAATTCTGAGAAAGAGGAAGAGAAACGAGCAAGAGAGAGAATTCGCTGGAAACTAGAACAAGATAAGTTAGAAAGAAGAGTTAAGCTTGGATTGCCACCAGGACACACAGCATCTGCGAAACTTTCTATACCTGTGAGGGGGGAAATCCAGACCGTCCGATCTGTTGCAAAGTCAGAACATATAAGAGAGTGTTTAAGGTCTCTGAGGCACAACCAAAAGGATGATGATGCTAGAGTACAACGAGCCTTCCAAACTCTGCTGATTTATGTTGGAAATGTTGCAAAGAATCCCGATCAAGAAAAATTCCGGAAGATTAGACTCGGTAATCCGTCATTCTTGGATAGAGTTGGAAGTTTGATTGGAGGAATAGAGTTTCTTGAGCTCTGTGGGTTTGAGAGAACTGAAGCAGGAGAGTTCTTGTATCTTCCTCGTGATAAGGTTGACATGGCAACATTATACTCCGCTGCTTCTGAACTGAAGTCTGCATTGACAAACCCTTTCTTTGGCCTTCTGTCAAGAGATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003999 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0006139 GO:0006144 GO:0006168 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0008150 GO:0008152 GO:0008509 GO:0009058 GO:0009112 GO:0009113 GO:0009987 GO:0012505 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0022857 GO:0034220 GO:0034641 GO:0034654 GO:0035435 GO:0042440 GO:0043094 GO:0043096 GO:0043101 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046083 GO:0046084 GO:0046112 GO:0046148 GO:0046483 GO:0051179 GO:0051234 GO:0055085 GO:0055086 GO:0071704 GO:0071944 GO:0072521 GO:0072522 GO:0098656 GO:0098660 GO:0098661 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

Pribosyltran

Protein Analysis

236

Amino Acids

27.59

Weight (kDa)

9.64

Isoelectric Point (pI)

49.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUB	PF09409	139 - 209	6.8e-21	PUB domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32250 AT4G32250 AT4G32250
fragaria_vesca	FvH4_2g28950 FvH4_2g28950 FvH4_2g28950 FvH4_2g28950 FvH4_2g28950 FvH4_2g28950 FvH4_2g28950 FvH4_6g29550 FvH4_6g29550 FvH4_6g29550
malus_domestica	MD15G1126200.v1.1 MD17G1213100.v1.1
prunus_persica	Prupe.1G482100_v2.0.a1 Prupe.1G482100_v2.0.a1 Prupe.3G088500_v2.0.a1
pyrus_communis	pycom15g11390 pycom17g21810
rosa_chinensis	RchiOBHm_Chr2g0121151 RchiOBHm_Chr2g0135111 RchiOBHm_Chr4g0394841 RchiOBHm_Chr6g0297781
rosa_laevigata	RLG00000011562 RLG00000019442
rosa_multiflora	Rmu_sc0001385.1_g000016 Rmu_sc0002674.1_g000013 Rmu_sc0002674.1_g000015 Rmu_sc0003543.1_g000004 Rmu_sc0003741.1_g000001 Rmu_sc0005276.1_g000013 Rmu_sc0024743.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109480 Rroxscaffold_7G00170200 Rroxscaffold_7G00179050
rosa_rugosa	Rorug02G0322800 Rorug02G0322900 Rorug02G0323000 Rorug02G0323100 Rorug02G0323200 Rorug06G0275400 Rorug06G0275400 Rorug06G0275400 Rorug06G0275400
rosa_samantha	Rh2AG371800 Rh2BG379700 Rh2CG358800 Rh2DG396300 Rh4CG052500 Rh6AG386000 Rh6BG394600 Rh6CG400300 Rh6DG386800
rosa_wichuraiana	Rw0G013570 Rw6G033650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	489
AciI	CCGC	1 cut(s)	645
AclWI	GGATC	1 cut(s)	36
AcsI	RAATTY	3 cut(s)	184, 222, 485
AcuI	CTGAAG	2 cut(s)	606, 680
AfaI	GTAC	1 cut(s)	420
AfiI	CCNNNNNNNGG	2 cut(s)	320, 686
AjnI	CCWGG	1 cut(s)	280
AluBI	AGCT	2 cut(s)	268, 565
AluI	AGCT	2 cut(s)	268, 565
Alw21I	GWGCWC	1 cut(s)	567
Alw26I	GTCTC	1 cut(s)	387
AlwI	GGATC	1 cut(s)	36
AlwNI	CAGNNNCTG	1 cut(s)	296
Aor13HI	TCCGGA	1 cut(s)	489
AoxI	GGCC	1 cut(s)	688
ApeKI	GCWGC	1 cut(s)	647
ApoI	RAATTY	3 cut(s)	184, 222, 485
BanII	GRGCYC	1 cut(s)	567
BauI	CACGAG	1 cut(s)	612
BbsI	GAAGAC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	567
BbvI	GCAGC	1 cut(s)	634
BciT130I	CCWGG	1 cut(s)	282
BcoDI	GTCTC	1 cut(s)	387
BfaI	CTAG	2 cut(s)	236, 414
BisI	GCNGC	1 cut(s)	648
BlsI	GCNGC	1 cut(s)	649
Bme1390I	CCNGG	1 cut(s)	282
BmrFI	CCNGG	1 cut(s)	282
BmsI	GCATC	2 cut(s)	302, 400
BpiI	GAAGAC	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	581
BsaI	GGTCTC	1 cut(s)	387
BsaWI	WCCGGW	1 cut(s)	489
Bsc4I	CCNNNNNNNGG	2 cut(s)	320, 686
Bse1I	ACTGG	1 cut(s)	72
BseAI	TCCGGA	1 cut(s)	489
BseBI	CCWGG	1 cut(s)	282
BseGI	GGATG	1 cut(s)	409
BseLI	CCNNNNNNNGG	2 cut(s)	320, 686
BseMII	CTCAG	2 cut(s)	180, 377
BseNI	ACTGG	1 cut(s)	72
BseXI	GCAGC	1 cut(s)	634
BshFI	GGCC	1 cut(s)	690
BsiHKAI	GWGCWC	1 cut(s)	567
BsiSI	CCGG	1 cut(s)	490
BslI	CCNNNNNNNGG	2 cut(s)	320, 686
BsmAI	GTCTC	1 cut(s)	387
BsnI	GGCC	1 cut(s)	690
Bso31I	GGTCTC	1 cut(s)	387
Bsp1286I	GDGCHC	1 cut(s)	567
Bsp13I	TCCGGA	1 cut(s)	489
Bsp143I	GATC	4 cut(s)	28, 110, 341, 475
BspACI	CCGC	1 cut(s)	645
BspANI	GGCC	1 cut(s)	690
BspCNI	CTCAG	2 cut(s)	181, 378
BspEI	TCCGGA	1 cut(s)	489
BspPI	GGATC	1 cut(s)	36
BspTNI	GGTCTC	1 cut(s)	387
BsrI	ACTGG	1 cut(s)	72
BssMI	GATC	4 cut(s)	28, 110, 341, 475
BssSI	CACGAG	1 cut(s)	612
Bst2BI	CACGAG	1 cut(s)	612
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	337
Bst6I	CTCTTC	2 cut(s)	195, 253
BstDEI	CTNAG	3 cut(s)	145, 189, 386
BstF5I	GGATG	1 cut(s)	409
BstKTI	GATC	4 cut(s)	31, 113, 344, 478
BstMAI	GTCTC	1 cut(s)	387
BstMBI	GATC	4 cut(s)	28, 110, 341, 475
BstMWI	GCNNNNNNNGC	1 cut(s)	274
BstNI	CCWGG	1 cut(s)	282
BstSCI	CCNGG	1 cut(s)	280
BstV1I	GCAGC	1 cut(s)	634
BstV2I	GAAGAC	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	690
BtsCI	GGATG	1 cut(s)	409
CaiI	CAGNNNCTG	1 cut(s)	296
Csp6I	GTAC	1 cut(s)	419
CviAII	CATG	2 cut(s)	127, 628
CviJI	RGCY	4 cut(s)	268, 428, 565, 690
CviKI_1	RGCY	4 cut(s)	268, 428, 565, 690
CviQI	GTAC	1 cut(s)	419
DdeI	CTNAG	3 cut(s)	145, 189, 386
DpnI	GATC	4 cut(s)	30, 112, 343, 477
DpnII	GATC	4 cut(s)	28, 110, 341, 475
Eam1104I	CTCTTC	2 cut(s)	195, 253
EarI	CTCTTC	2 cut(s)	195, 253
Ecl136II	GAGCTC	1 cut(s)	565
Eco24I	GRGCYC	1 cut(s)	567
Eco31I	GGTCTC	1 cut(s)	387
Eco53kI	GAGCTC	1 cut(s)	565
Eco57I	CTGAAG	2 cut(s)	606, 680
EcoICRI	GAGCTC	1 cut(s)	565
EcoRI	GAATTC	2 cut(s)	184, 222
EcoRII	CCWGG	1 cut(s)	280
EcoT38I	GRGCYC	1 cut(s)	567
FaeI	CATG	2 cut(s)	130, 631
FaiI	YATR	8 cut(s)	128, 173, 311, 363, 365, 450, 629, 640
FalI	AAGNNNNNCTT	2 cut(s)	128, 160
FatI	CATG	2 cut(s)	126, 627
Fnu4HI	GCNGC	1 cut(s)	648
FokI	GGATG	1 cut(s)	416
FriOI	GRGCYC	1 cut(s)	567
Fsp4HI	GCNGC	1 cut(s)	648
FspBI	CTAG	2 cut(s)	236, 414
GluI	GCNGC	1 cut(s)	648
HaeIII	GGCC	1 cut(s)	690
HapII	CCGG	1 cut(s)	490
Hin1II	CATG	2 cut(s)	130, 631
HincII	GTYRAC	1 cut(s)	625
HindII	GTYRAC	1 cut(s)	625
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	3 cut(s)	106, 469, 501
HpaII	CCGG	1 cut(s)	490
Hpy166II	GTNNAC	1 cut(s)	625
Hpy188I	TCNGA	6 cut(s)	183, 190, 341, 358, 387, 655
Hpy188III	TCNNGA	7 cut(s)	331, 473, 479, 490, 560, 614, 699
Hpy8I	GTNNAC	1 cut(s)	625
HpyAV	CCTTC	3 cut(s)	91, 439, 701
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4IV	ACGT	1 cut(s)	166
HpyCH4V	TGCA	3 cut(s)	350, 464, 668
HpyF10VI	GCNNNNNNNGC	1 cut(s)	274
HpyF3I	CTNAG	3 cut(s)	145, 189, 386
HpySE526I	ACGT	1 cut(s)	166
Hsp92II	CATG	2 cut(s)	130, 631
Kpn2I	TCCGGA	1 cut(s)	489
Kzo9I	GATC	4 cut(s)	28, 110, 341, 475
LpnPI	CCDG	9 cut(s)	53, 99, 214, 267, 294, 327, 344, 503, 576
Lsp1109I	GCAGC	1 cut(s)	634
LweI	GCATC	2 cut(s)	302, 400
MaeI	CTAG	2 cut(s)	236, 414
MaeII	ACGT	1 cut(s)	166
MalI	GATC	4 cut(s)	30, 112, 343, 477
MboI	GATC	4 cut(s)	28, 110, 341, 475
MboII	GAAGA	7 cut(s)	65, 68, 161, 212, 270, 505, 599
MhlI	GDGCHC	1 cut(s)	567
MluCI	AATT	4 cut(s)	71, 184, 222, 485
MlyI	GAGTC	1 cut(s)	495
MmeI	TCCRAC	2 cut(s)	433, 511
MnlI	CCTC	6 cut(s)	96, 190, 312, 381, 539, 621
MroI	TCCGGA	1 cut(s)	489
MseI	TTAA	3 cut(s)	23, 264, 377
MspA1I	CMGCKG	1 cut(s)	647
MspI	CCGG	1 cut(s)	490
MspR9I	CCNGG	1 cut(s)	282
MvaI	CCWGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	1 cut(s)	274
NdeII	GATC	4 cut(s)	28, 110, 341, 475
NlaIII	CATG	2 cut(s)	130, 631
PfeI	GAWTC	2 cut(s)	106, 469
PkrI	GCNGC	1 cut(s)	649
PleI	GAGTC	1 cut(s)	495
PpsI	GAGTC	1 cut(s)	495
Psp124BI	GAGCTC	1 cut(s)	567
Psp6I	CCWGG	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	280
PstNI	CAGNNNCTG	1 cut(s)	296
RsaI	GTAC	1 cut(s)	420
RsaNI	GTAC	1 cut(s)	419
SacI	GAGCTC	1 cut(s)	567
SaqAI	TTAA	3 cut(s)	23, 264, 377
SatI	GCNGC	1 cut(s)	648
Sau3AI	GATC	4 cut(s)	28, 110, 341, 475
SchI	GAGTC	1 cut(s)	495
ScrFI	CCNGG	1 cut(s)	282
SduI	GDGCHC	1 cut(s)	567
SetI	ASST	6 cut(s)	169, 270, 316, 383, 567, 624
SfaNI	GCATC	2 cut(s)	302, 400
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
Sse9I	AATT	4 cut(s)	71, 184, 222, 485
SsiI	CCGC	1 cut(s)	645
SspMI	CTAG	2 cut(s)	236, 414
SstI	GAGCTC	1 cut(s)	567
StyD4I	CCNGG	1 cut(s)	280
TaaI	ACNGT	1 cut(s)	337
TaiI	ACGT	1 cut(s)	169
TaqI	TCGA	1 cut(s)	109
TasI	AATT	4 cut(s)	71, 184, 222, 485
TatI	WGTACW	1 cut(s)	418
TfiI	GAWTC	2 cut(s)	106, 469
Tru1I	TTAA	3 cut(s)	23, 264, 377
Tru9I	TTAA	3 cut(s)	23, 264, 377
TseI	GCWGC	1 cut(s)	647
TspDTI	ATGAA	2 cut(s)	17, 171
TspGWI	ACGGA	1 cut(s)	501
XapI	RAATTY	3 cut(s)	184, 222, 485
XspI	CTAG	2 cut(s)	236, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.