RchiOBHm_Chr2g0121151

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001247
Physical Location & Seq
Reverse (-)
34043550 .. 34044808
1259 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49371

Sequence Viewer

Length: 1023 bp
ATGGAGCAGCAAATTGCAAAAGAAAAGCCTGCAATTTCTTTCGAGTATGAGCTCTTTCAAGACCCTGATCATCTAACAACTGTTGTAGCTACACTCACTCCAACTAGTCCCTGGATCAATCCTGCCTCATTGAACTTTAAGTACCGAATTGGACGGGGCCCCTTTGGTGATGTATGGTTAGCAACTCATCACCAGTCAGCAGATGATTATGATGAATATCATGAGGTAGCAGTTAAGATGTTGCATCCTTTGATGGAGGAGGACAGAGAAAAGTTTCTGCACAAGTTCGAAAAGTTATTTTTCAAGTTCCGCAGACTGTGCGGTGTTTGTTGGTTTCATGGTATCTCAATCATTGATGGAAGGATCTGCATCGCTATGAAATTTTATGAGGGGTCAGTTGGTGACCGAGTTGCTAGGTTGAAGGGTGGAAAACTTCAACTTTTTGATGTTTTAAGGTATGGGATTGAGTTGGCAAAAGGAATTTCAGAATTGCATTCACTAGGGCTTCTGGTGCTAAATTTGAAGCCGTCCAACATCCTTGTAGATGAACACGGCCAGGTGGTCCTTGGAGATTTTGGAATCCCATTTCTACTTCTTGGGGCTTCATTGTCTAATCCTAATATGGCTTTTAGACTTGGCACTCCGAACTACATGGCTCCAGAACAGTGGGAACCAGAAGTGAGGGGTCCTATATCTTTAGAAACAGATTCTTGGGGCTTTGGATGTTGCTTTGTAGAGATGTTGACTGGTAGTCAATCCTGGTTTGGGAGTTCAATTAAAGAGATATATCATTCAGTTGTGATCAAGCGAGAAAAGCCACCTGTTCCAAGTGGTTTGCCTCCTGCAGTGGAGAATGTTATCAACGGCTGCTTTGAGTATGATCTCCGTAATAGGCCCTCAATGGAAGATATCATACGTGCATTGGAAAGGTATACCCACTACCATTACCCAATAATGGTAGAGGTTTCAAGGTCCGTCATACTCAAACTTTCTCAGTTTCATCCATTTCATTGTAGCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0007034 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0012505 GO:0016192 GO:0016197 GO:0016301 GO:0016310 GO:0016567 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019787 GO:0023051 GO:0023052 GO:0023057 GO:0031410 GO:0031982 GO:0031984 GO:0032446 GO:0032502 GO:0032870 GO:0032940 GO:0033993 GO:0036211 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045324 GO:0046903 GO:0046907 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0065007 GO:0070647 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0097708 GO:0098791 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1901701 GO:1905957 GO:1905958
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1 Pkinase Pkinase_Tyr

Protein Analysis

340

Amino Acids

38.86

Weight (kDa)

6.06

Isoelectric Point (pI)

41.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 45 - 308 4e-31 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 47 - 305 4.4e-27 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 932
AciI CCGC 2 cut(s) 310, 321
AclWI GGATC 2 cut(s) 122, 371
AcoI YGGCCR 1 cut(s) 553
AcsI RAATTY 3 cut(s) 380, 480, 517
AfaI GTAC 1 cut(s) 143
AfiI CCNNNNNNNGG 2 cut(s) 765, 955
AgsI TTSAA 8 cut(s) 59, 133, 304, 421, 437, 523, 774, 969
AhdI GACNNNNNGTC 1 cut(s) 750
AhlI ACTAGT 1 cut(s) 104
AjnI CCWGG 3 cut(s) 110, 555, 758
AluBI AGCT 3 cut(s) 52, 89, 1017
AluI AGCT 3 cut(s) 52, 89, 1017
Alw21I GWGCWC 1 cut(s) 54
AlwI GGATC 2 cut(s) 122, 371
AoxI GGCC 3 cut(s) 157, 553, 893
ApaI GGGCCC 1 cut(s) 161
ApeKI GCWGC 2 cut(s) 7, 867
ApoI RAATTY 3 cut(s) 380, 480, 517
Asp700I GAANNNNTTC 1 cut(s) 273
AspS9I GGNCC 6 cut(s) 157, 158, 562, 686, 894, 972
AsuHPI GGTGA 3 cut(s) 179, 182, 413
AsuII TTCGAA 1 cut(s) 288
AvaII GGWCC 3 cut(s) 562, 686, 972
BaeGI GKGCMC 1 cut(s) 161
BanII GRGCYC 2 cut(s) 54, 161
BarI GAAGNNNNNNTAC 2 cut(s) 897, 929
Bbv12I GWGCWC 1 cut(s) 54
BbvI GCAGC 2 cut(s) 19, 854
BccI CCATC 2 cut(s) 247, 350
BceAI ACGGC 3 cut(s) 511, 568, 880
BciT130I CCWGG 3 cut(s) 112, 557, 760
BclI TGATCA 2 cut(s) 67, 801
BcuI ACTAGT 1 cut(s) 104
BfaI CTAG 3 cut(s) 105, 414, 500
BfmI CTRYAG 1 cut(s) 843
BisI GCNGC 2 cut(s) 8, 868
BlsI GCNGC 2 cut(s) 9, 869
Bme1390I CCNGG 3 cut(s) 112, 557, 760
Bme18I GGWCC 3 cut(s) 562, 686, 972
BmeRI GACNNNNNGTC 1 cut(s) 750
BmgT120I GGNCC 6 cut(s) 157, 158, 562, 686, 894, 972
BmiI GGNNCC 6 cut(s) 158, 159, 160, 657, 672, 687
BmrFI CCNGG 3 cut(s) 112, 557, 760
BmsI GCATC 2 cut(s) 253, 378
BpmI CTGGAG 1 cut(s) 642
Bpu14I TTCGAA 1 cut(s) 288
BsaAI YACGTR 1 cut(s) 917
BsaBI GATNNNNATC 2 cut(s) 216, 368
BsaJI CCNNGG 2 cut(s) 110, 565
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
Bsc4I CCNNNNNNNGG 2 cut(s) 765, 955
Bse1I ACTGG 2 cut(s) 193, 751
Bse8I GATNNNNATC 2 cut(s) 216, 368
BseBI CCWGG 3 cut(s) 112, 557, 760
BseDI CCNNGG 2 cut(s) 110, 565
BseGI GGATG 4 cut(s) 244, 534, 728, 1000
BseJI GATNNNNATC 2 cut(s) 216, 368
BseLI CCNNNNNNNGG 2 cut(s) 765, 955
BseMII CTCAG 1 cut(s) 1007
BseNI ACTGG 2 cut(s) 193, 751
BseRI GAGGAG 1 cut(s) 272
BseSI GKGCMC 1 cut(s) 161
BseXI GCAGC 2 cut(s) 19, 854
BsgI GTGCAG 1 cut(s) 263
BshFI GGCC 3 cut(s) 159, 555, 895
BsiHKAI GWGCWC 1 cut(s) 54
BslFI GGGAC 1 cut(s) 93
BslI CCNNNNNNNGG 2 cut(s) 765, 955
BsmFI GGGAC 1 cut(s) 93
BsmI GAATGC 1 cut(s) 493
BsnI GGCC 3 cut(s) 159, 555, 895
Bsp119I TTCGAA 1 cut(s) 288
Bsp120I GGGCCC 1 cut(s) 157
Bsp1286I GDGCHC 2 cut(s) 54, 161
Bsp143I GATC 5 cut(s) 67, 114, 363, 801, 880
BspACI CCGC 2 cut(s) 310, 321
BspANI GGCC 3 cut(s) 159, 555, 895
BspCNI CTCAG 1 cut(s) 1006
BspHI TCATGA 1 cut(s) 220
BspLI GGNNCC 6 cut(s) 158, 159, 160, 657, 672, 687
BspMAI CTGCAG 1 cut(s) 847
BspPI GGATC 2 cut(s) 122, 371
BspT104I TTCGAA 1 cut(s) 288
BsrI ACTGG 2 cut(s) 193, 751
BssECI CCNNGG 2 cut(s) 110, 565
BssMI GATC 5 cut(s) 67, 114, 363, 801, 880
BssNAI GTATAC 1 cut(s) 933
BssT1I CCWWGG 1 cut(s) 565
Bst1107I GTATAC 1 cut(s) 933
Bst2UI CCWGG 3 cut(s) 112, 557, 760
Bst4CI ACNGT 3 cut(s) 82, 318, 666
BstAPI GCANNNNNTGC 1 cut(s) 318
BstBAI YACGTR 1 cut(s) 917
BstBI TTCGAA 1 cut(s) 288
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 1 cut(s) 993
BstEII GGTNACC 1 cut(s) 401
BstF5I GGATG 4 cut(s) 244, 534, 728, 1000
BstKTI GATC 5 cut(s) 70, 117, 366, 804, 883
BstMBI GATC 5 cut(s) 67, 114, 363, 801, 880
BstMWI GCNNNNNNNGC 3 cut(s) 318, 511, 814
BstNI CCWGG 3 cut(s) 112, 557, 760
BstPI GGTNACC 1 cut(s) 401
BstSCI CCNGG 3 cut(s) 110, 555, 758
BstSFI CTRYAG 1 cut(s) 843
BstSLI GKGCMC 1 cut(s) 161
BstV1I GCAGC 2 cut(s) 19, 854
BstX2I RGATCY 1 cut(s) 363
BstXI CCANNNNNNTGG 1 cut(s) 666
BstYI RGATCY 1 cut(s) 363
BstZ17I GTATAC 1 cut(s) 933
BsuRI GGCC 3 cut(s) 159, 555, 895
BtgZI GCGATG 1 cut(s) 355
BtsCI GGATG 4 cut(s) 244, 534, 728, 1000
BtsI GCAGTG 1 cut(s) 852
BtsIMutI CAGTG 2 cut(s) 671, 852
Cac8I GCNNGC 1 cut(s) 30
CciI TCATGA 1 cut(s) 220
Cfr13I GGNCC 6 cut(s) 157, 158, 562, 686, 894, 972
Csp6I GTAC 1 cut(s) 142
CviAII CATG 3 cut(s) 221, 338, 652
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 1 cut(s) 993
DpnI GATC 5 cut(s) 69, 116, 365, 803, 882
DpnII GATC 5 cut(s) 67, 114, 363, 801, 880
DriI GACNNNNNGTC 1 cut(s) 750
EaeI YGGCCR 1 cut(s) 553
Eam1105I GACNNNNNGTC 1 cut(s) 750
Ecl136II GAGCTC 1 cut(s) 52
Eco130I CCWWGG 1 cut(s) 565
Eco24I GRGCYC 2 cut(s) 54, 161
Eco32I GATATC 1 cut(s) 910
Eco47I GGWCC 3 cut(s) 562, 686, 972
Eco53kI GAGCTC 1 cut(s) 52
Eco91I GGTNACC 1 cut(s) 401
EcoICRI GAGCTC 1 cut(s) 52
EcoO109I RGGNCCY 4 cut(s) 157, 158, 686, 894
EcoO65I GGTNACC 1 cut(s) 401
EcoRII CCWGG 3 cut(s) 110, 555, 758
EcoRV GATATC 1 cut(s) 910
EcoT14I CCWWGG 1 cut(s) 565
EcoT38I GRGCYC 2 cut(s) 54, 161
ErhI CCWWGG 1 cut(s) 565
FaeI CATG 3 cut(s) 224, 341, 655
FaqI GGGAC 1 cut(s) 93
FatI CATG 3 cut(s) 220, 337, 651
FbaI TGATCA 2 cut(s) 67, 801
FblI GTMKAC 1 cut(s) 932
Fnu4HI GCNGC 2 cut(s) 8, 868
FokI GGATG 4 cut(s) 231, 521, 735, 987
FriOI GRGCYC 2 cut(s) 54, 161
Fsp4HI GCNGC 2 cut(s) 8, 868
FspBI CTAG 3 cut(s) 105, 414, 500
GluI GCNGC 2 cut(s) 8, 868
GsuI CTGGAG 1 cut(s) 642
HaeIII GGCC 3 cut(s) 159, 555, 895
Hin1II CATG 3 cut(s) 224, 341, 655
HincII GTYRAC 1 cut(s) 744
HindII GTYRAC 1 cut(s) 744
HinfI GANTC 2 cut(s) 579, 707
HphI GGTGA 3 cut(s) 179, 182, 413
Hpy166II GTNNAC 2 cut(s) 744, 933
Hpy188I TCNGA 2 cut(s) 487, 645
Hpy188III TCNNGA 3 cut(s) 59, 221, 659
Hpy8I GTNNAC 2 cut(s) 744, 933
HpyAV CCTTC 2 cut(s) 354, 415
HpyCH4III ACNGT 3 cut(s) 82, 318, 666
HpyCH4IV ACGT 1 cut(s) 916
HpyCH4V TGCA 8 cut(s) 17, 32, 244, 280, 369, 493, 845, 920
HpyF10VI GCNNNNNNNGC 3 cut(s) 318, 511, 814
HpyF3I CTNAG 1 cut(s) 993
HpySE526I ACGT 1 cut(s) 916
Hsp92II CATG 3 cut(s) 224, 341, 655
Ksp22I TGATCA 2 cut(s) 67, 801
Kzo9I GATC 5 cut(s) 67, 114, 363, 801, 880
LmnI GCTCC 2 cut(s) 4, 661
Lsp1109I GCAGC 2 cut(s) 19, 854
LweI GCATC 2 cut(s) 253, 378
MaeI CTAG 3 cut(s) 105, 414, 500
MaeII ACGT 1 cut(s) 916
MaeIII GTNAC 1 cut(s) 401
MalI GATC 5 cut(s) 69, 116, 365, 803, 882
MboI GATC 5 cut(s) 67, 114, 363, 801, 880
MboII GAAGA 1 cut(s) 917
MflI RGATCY 1 cut(s) 363
MhlI GDGCHC 2 cut(s) 54, 161
MluCI AATT 8 cut(s) 12, 33, 147, 380, 480, 488, 517, 774
MmeI TCCRAC 2 cut(s) 125, 555
MnlI CCTC 9 cut(s) 136, 217, 250, 253, 382, 675, 849, 907, 955
MroXI GAANNNNTTC 1 cut(s) 273
MseI TTAA 4 cut(s) 138, 234, 452, 777
MslI CAYNNNNRTG 1 cut(s) 374
MspR9I CCNGG 3 cut(s) 112, 557, 760
Mva1269I GAATGC 1 cut(s) 493
MvaI CCWGG 3 cut(s) 112, 557, 760
MwoI GCNNNNNNNGC 3 cut(s) 318, 511, 814
NdeII GATC 5 cut(s) 67, 114, 363, 801, 880
NlaIII CATG 3 cut(s) 224, 341, 655
NlaIV GGNNCC 6 cut(s) 158, 159, 160, 657, 672, 687
NmuCI GTSAC 1 cut(s) 401
NspV TTCGAA 1 cut(s) 288
PagI TCATGA 1 cut(s) 220
PctI GAATGC 1 cut(s) 493
PdmI GAANNNNTTC 1 cut(s) 273
PfeI GAWTC 2 cut(s) 579, 707
PkrI GCNGC 2 cut(s) 9, 869
Ppu21I YACGTR 1 cut(s) 917
PpuMI RGGWCCY 1 cut(s) 686
Psp124BI GAGCTC 1 cut(s) 54
Psp5II RGGWCCY 1 cut(s) 686
Psp6I CCWGG 3 cut(s) 110, 555, 758
PspEI GGTNACC 1 cut(s) 401
PspGI CCWGG 3 cut(s) 110, 555, 758
PspN4I GGNNCC 6 cut(s) 158, 159, 160, 657, 672, 687
PspOMI GGGCCC 1 cut(s) 157
PspPI GGNCC 6 cut(s) 157, 158, 562, 686, 894, 972
PspPPI RGGWCCY 1 cut(s) 686
PsrI GAACNNNNNNTAC 2 cut(s) 125, 157
PstI CTGCAG 1 cut(s) 847
PsuI RGATCY 1 cut(s) 363
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
RseI CAYNNNNRTG 1 cut(s) 374
SacI GAGCTC 1 cut(s) 54
SaqAI TTAA 4 cut(s) 138, 234, 452, 777
SatI GCNGC 2 cut(s) 8, 868
Sau3AI GATC 5 cut(s) 67, 114, 363, 801, 880
Sau96I GGNCC 6 cut(s) 157, 158, 562, 686, 894, 972
ScrFI CCNGG 3 cut(s) 112, 557, 760
SduI GDGCHC 2 cut(s) 54, 161
SfaNI GCATC 2 cut(s) 253, 378
SfcI CTRYAG 1 cut(s) 843
SfuI TTCGAA 1 cut(s) 288
SinI GGWCC 3 cut(s) 562, 686, 972
SmiMI CAYNNNNRTG 1 cut(s) 374
SpeI ACTAGT 1 cut(s) 104
Sse9I AATT 8 cut(s) 12, 33, 147, 380, 480, 488, 517, 774
SsiI CCGC 2 cut(s) 310, 321
SspMI CTAG 3 cut(s) 105, 414, 500
SstI GAGCTC 1 cut(s) 54
StyD4I CCNGG 3 cut(s) 110, 555, 758
StyI CCWWGG 1 cut(s) 565
TaaI ACNGT 3 cut(s) 82, 318, 666
TaiI ACGT 1 cut(s) 919
TaqI TCGA 2 cut(s) 42, 288
TaqII GACCGA 1 cut(s) 420
TasI AATT 8 cut(s) 12, 33, 147, 380, 480, 488, 517, 774
TfiI GAWTC 2 cut(s) 579, 707
Tru1I TTAA 4 cut(s) 138, 234, 452, 777
Tru9I TTAA 4 cut(s) 138, 234, 452, 777
TscAI CASTG 2 cut(s) 671, 852
TseFI GTSAC 1 cut(s) 401
TseI GCWGC 2 cut(s) 7, 867
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 7 cut(s) 228, 326, 392, 561, 594, 989, 998
TspGWI ACGGA 2 cut(s) 875, 964
TspRI CASTG 2 cut(s) 671, 852
VpaK11BI GGWCC 3 cut(s) 562, 686, 972
XapI RAATTY 3 cut(s) 380, 480, 517
XcmI CCANNNNNNNNNTGG 2 cut(s) 108, 563
XmiI GTMKAC 1 cut(s) 932
XmnI GAANNNNTTC 1 cut(s) 273
XspI CTAG 3 cut(s) 105, 414, 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.