Rorug02G0323000

Protein kinase domain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
39554497 .. 39554940
444 bp
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UTR
Exon/CDS
Intron
Rorug02G0323000.1

Sequence Viewer

Length: 444 bp
ATGGGACAAGTTTTTGGTTGTTTTGGAATGATTCTGAAACTTACTGGACCAGTGGATATTGGACAGGGAAAGTTTTCAGTCTCGTTCCTAAAGCAGCAAATAAAGATTATATTTCAAGTTTCACTTTTGATTCAAATGAGAACCGAAGCTATTTCCACATATGCTGCTGCCTATCCTGACACCTTCATTAGGTTCATACTAGATTCCAGTGGTCAATTCAAGTTGTATGCTAGAAAGGGATTCACCCAGTGGTCTTTGATATGGATGCAACCAAATGAACAATGTGATGTTTATGCTTCATGTGGTGCTTTTAGTACCTGCAGTAACACACAAAATTTGTATCTTTGCGGTTGCTTGAAAGGATTTGAACCGAAAGTAGCTGAAGGTTGGAAACTAGAAGACCACTCAGAAGGCTGTGTGAGAAATGCTCCTTTTAAGTTTTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

147

Amino Acids

16.53

Weight (kDa)

8.47

Isoelectric Point (pI)

26.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 36 - 125 2.4e-20 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 326
AciI CCGC 1 cut(s) 348
AcsI RAATTY 1 cut(s) 334
AcuI CTGAAG 1 cut(s) 402
AdeI CACNNNGTG 1 cut(s) 249
AfaI GTAC 1 cut(s) 316
AfiI CCNNNNNNNGG 1 cut(s) 189
AgsI TTSAA 5 cut(s) 116, 134, 220, 358, 368
AluBI AGCT 2 cut(s) 149, 380
AluI AGCT 2 cut(s) 149, 380
Alw26I GTCTC 1 cut(s) 85
ApeKI GCWGC 3 cut(s) 94, 164, 167
ApoI RAATTY 1 cut(s) 334
Asp700I GAANNNNTTC 1 cut(s) 73
AspS9I GGNCC 1 cut(s) 47
AsuHPI GGTGA 1 cut(s) 235
AvaII GGWCC 1 cut(s) 47
BbsI GAAGAC 1 cut(s) 405
BbvI GCAGC 3 cut(s) 106, 151, 154
BcoDI GTCTC 1 cut(s) 85
BfaI CTAG 3 cut(s) 200, 231, 395
BfmI CTRYAG 1 cut(s) 319
BfuAI ACCTGC 1 cut(s) 326
BisI GCNGC 3 cut(s) 95, 165, 168
BlsI GCNGC 3 cut(s) 96, 166, 169
Bme18I GGWCC 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 47
BmrI ACTGGG 1 cut(s) 241
BmsI GCATC 1 cut(s) 255
BmuI ACTGGG 1 cut(s) 241
BpiI GAAGAC 1 cut(s) 405
BplI GAGNNNNNCTC 2 cut(s) 412, 444
Bsc4I CCNNNNNNNGG 1 cut(s) 189
Bse1I ACTGG 4 cut(s) 49, 50, 207, 247
BseGI GGATG 1 cut(s) 270
BseLI CCNNNNNNNGG 1 cut(s) 189
BseMII CTCAG 1 cut(s) 420
BseNI ACTGG 4 cut(s) 49, 50, 207, 247
BseXI GCAGC 3 cut(s) 106, 151, 154
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 189
BsmAI GTCTC 1 cut(s) 85
BsmFI GGGAC 1 cut(s) 18
BspACI CCGC 1 cut(s) 348
BspCNI CTCAG 1 cut(s) 419
BspMAI CTGCAG 1 cut(s) 323
BspMI ACCTGC 1 cut(s) 326
BsrI ACTGG 4 cut(s) 49, 50, 207, 247
BstDEI CTNAG 1 cut(s) 406
BstENI CCTNNNNNAGG 1 cut(s) 187
BstF5I GGATG 1 cut(s) 270
BstMAI GTCTC 1 cut(s) 85
BstSFI CTRYAG 1 cut(s) 319
BstV1I GCAGC 3 cut(s) 106, 151, 154
BstV2I GAAGAC 1 cut(s) 405
BtsCI GGATG 1 cut(s) 270
BtsIMutI CAGTG 3 cut(s) 57, 214, 254
BveI ACCTGC 1 cut(s) 326
Cfr13I GGNCC 1 cut(s) 47
Csp6I GTAC 1 cut(s) 315
CviAII CATG 1 cut(s) 300
CviJI RGCY 3 cut(s) 149, 380, 414
CviKI_1 RGCY 3 cut(s) 149, 380, 414
CviQI GTAC 1 cut(s) 315
DdeI CTNAG 1 cut(s) 406
DraIII CACNNNGTG 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 47
Eco57I CTGAAG 1 cut(s) 402
EcoNI CCTNNNNNAGG 1 cut(s) 187
FaeI CATG 1 cut(s) 303
FaiI YATR 8 cut(s) 110, 160, 162, 197, 228, 262, 294, 301
FalI AAGNNNNNCTT 2 cut(s) 108, 140
FaqI GGGAC 1 cut(s) 18
FatI CATG 1 cut(s) 299
FauNDI CATATG 1 cut(s) 160
Fnu4HI GCNGC 3 cut(s) 95, 165, 168
FokI GGATG 1 cut(s) 277
Fsp4HI GCNGC 3 cut(s) 95, 165, 168
FspBI CTAG 3 cut(s) 200, 231, 395
GluI GCNGC 3 cut(s) 95, 165, 168
Hin1II CATG 1 cut(s) 303
HinfI GANTC 4 cut(s) 31, 130, 203, 240
HphI GGTGA 1 cut(s) 235
Hpy188I TCNGA 2 cut(s) 36, 409
Hpy188III TCNNGA 1 cut(s) 176
HpyAV CCTTC 3 cut(s) 193, 377, 404
HpyCH4V TGCA 2 cut(s) 268, 321
HpyF3I CTNAG 1 cut(s) 406
Hsp92II CATG 1 cut(s) 303
LmnI GCTCC 1 cut(s) 433
LpnPI CCDG 7 cut(s) 30, 50, 63, 189, 220, 260, 331
Lsp1109I GCAGC 3 cut(s) 106, 151, 154
LweI GCATC 1 cut(s) 255
MaeI CTAG 3 cut(s) 200, 231, 395
MaeIII GTNAC 1 cut(s) 323
MboII GAAGA 1 cut(s) 410
MluCI AATT 2 cut(s) 215, 334
MmeI TCCRAC 1 cut(s) 368
MroXI GAANNNNTTC 1 cut(s) 73
MseI TTAA 2 cut(s) 435, 442
NdeI CATATG 1 cut(s) 160
NlaIII CATG 1 cut(s) 303
PdmI GAANNNNTTC 1 cut(s) 73
PfeI GAWTC 4 cut(s) 31, 130, 203, 240
PkrI GCNGC 3 cut(s) 96, 166, 169
PspPI GGNCC 1 cut(s) 47
PstI CTGCAG 1 cut(s) 323
RsaI GTAC 1 cut(s) 316
RsaNI GTAC 1 cut(s) 315
SaqAI TTAA 2 cut(s) 435, 442
SatI GCNGC 3 cut(s) 95, 165, 168
Sau96I GGNCC 1 cut(s) 47
SetI ASST 6 cut(s) 151, 185, 194, 320, 382, 388
SfaNI GCATC 1 cut(s) 255
SfcI CTRYAG 1 cut(s) 319
SinI GGWCC 1 cut(s) 47
Sse9I AATT 2 cut(s) 215, 334
SsiI CCGC 1 cut(s) 348
SspMI CTAG 3 cut(s) 200, 231, 395
TasI AATT 2 cut(s) 215, 334
TfiI GAWTC 4 cut(s) 31, 130, 203, 240
Tru1I TTAA 2 cut(s) 435, 442
Tru9I TTAA 2 cut(s) 435, 442
TscAI CASTG 3 cut(s) 57, 214, 254
TseI GCWGC 3 cut(s) 94, 164, 167
TspDTI ATGAA 4 cut(s) 175, 184, 288, 291
TspRI CASTG 3 cut(s) 57, 214, 254
VpaK11BI GGWCC 1 cut(s) 47
XagI CCTNNNNNAGG 1 cut(s) 187
XapI RAATTY 1 cut(s) 334
XmnI GAANNNNTTC 1 cut(s) 73
XspI CTAG 3 cut(s) 200, 231, 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.