Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002674.1

Orthogroup ID

OG0001247

Physical Location & Seq

Genomic Coordinates Reverse (-)

40238 .. 41032

Gene Structure 795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002674.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

atggatgttccggaaggcacagtggtgggtatagaacatgatacagagcaacatgggtatgtcttggtgagggtccatggcatccatgacccattgagggttcatgcttcaactctggagcgggttacttttggcttggcagctggtgactgggtacgtttgaagaaggaagacaagaaacactcgccagtaggtattctccattccatcaatcgagacggtagtgtagctgttggatttatagggttggaaactctttggaagggaacttctttagagtttcagatggcagaatcttattgtgtgggtcaatttgttaggctgaaagccaatgttctgagtcctcgattcgaatggcctcgtaagacgggagggaaatgggctactggtaagatatggtggatcctaccaaatgggtgccttgttgtgaagttcccaggaatactgactttggggcatgaaaactcaacatttgtggccgatcctgcagaggtcgaatcagttacatttgagacttgtccaggaatggtgaagaagtaccaacatcttgaggattttcattgggcagtgaggccaattctgattgcattgggcctatttacagctatgaagatgggcatctgtattggtacaaaaattgggaaatgtaaagcgaagaaacgatggagtgcagctatacaggatgagagtcaccatttggatggtcagaattcaggaaatccagcttggaagaatccggtgacaaagatccttttcagagaaggtggcggttctgccacaggtcttgctcggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0007034 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0012505 GO:0016192 GO:0016197 GO:0016301 GO:0016310 GO:0016567 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019787 GO:0023051 GO:0023052 GO:0023057 GO:0031410 GO:0031982 GO:0031984 GO:0032446 GO:0032502 GO:0032870 GO:0032940 GO:0033993 GO:0036211 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045324 GO:0046903 GO:0046907 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0065007 GO:0070647 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0097708 GO:0098791 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1901701 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

264

Amino Acids

29.16

Weight (kDa)

9.06

Isoelectric Point (pI)

26.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32250 AT4G32250 AT4G32250
fragaria_vesca	FvH4_2g28950 FvH4_2g28950 FvH4_2g28950 FvH4_2g28950 FvH4_2g28950 FvH4_2g28950 FvH4_2g28950 FvH4_6g29550 FvH4_6g29550 FvH4_6g29550
malus_domestica	MD15G1126200.v1.1 MD17G1213100.v1.1
prunus_persica	Prupe.1G482100_v2.0.a1 Prupe.1G482100_v2.0.a1 Prupe.3G088500_v2.0.a1
pyrus_communis	pycom15g11390 pycom17g21810
rosa_chinensis	RchiOBHm_Chr2g0121151 RchiOBHm_Chr2g0135111 RchiOBHm_Chr4g0394841 RchiOBHm_Chr6g0297781
rosa_laevigata	RLG00000011562 RLG00000019442
rosa_multiflora	Rmu_sc0001385.1_g000016 Rmu_sc0002674.1_g000013 Rmu_sc0002674.1_g000015 Rmu_sc0003543.1_g000004 Rmu_sc0003741.1_g000001 Rmu_sc0005276.1_g000013 Rmu_sc0024743.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109480 Rroxscaffold_7G00170200 Rroxscaffold_7G00179050
rosa_rugosa	Rorug02G0322800 Rorug02G0322900 Rorug02G0323000 Rorug02G0323100 Rorug02G0323200 Rorug06G0275400 Rorug06G0275400 Rorug06G0275400 Rorug06G0275400
rosa_samantha	Rh2AG371800 Rh2BG379700 Rh2CG358800 Rh2DG396300 Rh4CG052500 Rh6AG386000 Rh6BG394600 Rh6CG400300 Rh6DG386800
rosa_wichuraiana	Rw0G013570 Rw6G033650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	417
AccBSI	CCGCTC	1 cut(s)	121
AccIII	TCCGGA	1 cut(s)	10
AciI	CCGC	2 cut(s)	121, 768
AclWI	GGATC	4 cut(s)	397, 410, 476, 742
AcoI	YGGCCR	1 cut(s)	477
AcsI	RAATTY	1 cut(s)	709
AfaI	GTAC	3 cut(s)	156, 539, 631
AfiI	CCNNNNNNNGG	1 cut(s)	97
AgsI	TTSAA	2 cut(s)	111, 163
AjnI	CCWGG	2 cut(s)	436, 520
AjuI	GAANNNNNNNTTGG	2 cut(s)	709, 741
AleI	CACNNNNGTG	1 cut(s)	23
AluBI	AGCT	5 cut(s)	143, 230, 605, 674, 725
AluI	AGCT	5 cut(s)	143, 230, 605, 674, 725
Alw26I	GTCTC	2 cut(s)	210, 506
AlwI	GGATC	4 cut(s)	397, 410, 476, 742
Aor13HI	TCCGGA	1 cut(s)	10
AoxI	GGCC	4 cut(s)	356, 477, 572, 592
ApeKI	GCWGC	2 cut(s)	140, 671
ApoI	RAATTY	1 cut(s)	709
AspS9I	GGNCC	2 cut(s)	73, 592
AsuHPI	GGTGA	5 cut(s)	79, 158, 541, 683, 751
AsuII	TTCGAA	1 cut(s)	351
AvaII	GGWCC	1 cut(s)	73
BamHI	GGATCC	1 cut(s)	402
BanI	GGYRCC	1 cut(s)	417
BbsI	GAAGAC	1 cut(s)	177
BbvI	GCAGC	2 cut(s)	152, 683
BccI	CCATC	5 cut(s)	215, 280, 607, 657, 695
BciT130I	CCWGG	2 cut(s)	438, 522
BcoDI	GTCTC	2 cut(s)	210, 506
BfmI	CTRYAG	1 cut(s)	486
BisI	GCNGC	2 cut(s)	141, 672
BlsI	GCNGC	2 cut(s)	142, 673
Bme1390I	CCNGG	2 cut(s)	438, 522
Bme18I	GGWCC	1 cut(s)	73
BmgT120I	GGNCC	2 cut(s)	73, 592
BmiI	GGNNCC	3 cut(s)	74, 404, 419
BmrFI	CCNGG	2 cut(s)	438, 522
BmrI	ACTGGG	1 cut(s)	160
BmsI	GCATC	2 cut(s)	90, 627
BmuI	ACTGGG	1 cut(s)	160
BpiI	GAAGAC	1 cut(s)	177
BpmI	CTGGAG	1 cut(s)	137
Bpu14I	TTCGAA	1 cut(s)	351
BpuEI	CTTGAG	1 cut(s)	569
BsaBI	GATNNNNATC	1 cut(s)	617
BsaJI	CCNNGG	2 cut(s)	76, 436
BsaWI	WCCGGW	2 cut(s)	10, 736
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse1I	ACTGG	3 cut(s)	155, 188, 391
Bse8I	GATNNNNATC	1 cut(s)	617
BseAI	TCCGGA	1 cut(s)	10
BseBI	CCWGG	2 cut(s)	438, 522
BseDI	CCNNGG	2 cut(s)	76, 436
BseGI	GGATG	4 cut(s)	10, 81, 688, 706
BseJI	GATNNNNATC	1 cut(s)	617
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseMII	CTCAG	1 cut(s)	329
BseNI	ACTGG	3 cut(s)	155, 188, 391
BseXI	GCAGC	2 cut(s)	152, 683
BsgI	GTGCAG	1 cut(s)	690
BshFI	GGCC	4 cut(s)	358, 479, 574, 594
BshNI	GGYRCC	1 cut(s)	417
BsiSI	CCGG	2 cut(s)	11, 737
BslI	CCNNNNNNNGG	1 cut(s)	97
BsmAI	GTCTC	2 cut(s)	210, 506
BsmBI	CGTCTC	1 cut(s)	210
BsnI	GGCC	4 cut(s)	358, 479, 574, 594
Bsp119I	TTCGAA	1 cut(s)	351
Bsp13I	TCCGGA	1 cut(s)	10
Bsp143I	GATC	3 cut(s)	402, 481, 747
Bsp19I	CCATGG	1 cut(s)	76
BspACI	CCGC	2 cut(s)	121, 768
BspANI	GGCC	4 cut(s)	358, 479, 574, 594
BspCNI	CTCAG	1 cut(s)	330
BspEI	TCCGGA	1 cut(s)	10
BspLI	GGNNCC	3 cut(s)	74, 404, 419
BspMAI	CTGCAG	1 cut(s)	490
BspPI	GGATC	4 cut(s)	397, 410, 476, 742
BspT104I	TTCGAA	1 cut(s)	351
BspT107I	GGYRCC	1 cut(s)	417
BsrBI	CCGCTC	1 cut(s)	121
BsrI	ACTGG	3 cut(s)	155, 188, 391
BssECI	CCNNGG	2 cut(s)	76, 436
BssMI	GATC	3 cut(s)	402, 481, 747
BssT1I	CCWWGG	1 cut(s)	76
Bst2UI	CCWGG	2 cut(s)	438, 522
Bst4CI	ACNGT	2 cut(s)	22, 221
BstBI	TTCGAA	1 cut(s)	351
BstDEI	CTNAG	1 cut(s)	338
BstDSI	CCRYGG	1 cut(s)	76
BstF5I	GGATG	4 cut(s)	10, 81, 688, 706
BstKTI	GATC	3 cut(s)	405, 484, 750
BstMAI	GTCTC	2 cut(s)	210, 506
BstMBI	GATC	3 cut(s)	402, 481, 747
BstMWI	GCNNNNNNNGC	1 cut(s)	485
BstNI	CCWGG	2 cut(s)	438, 522
BstSCI	CCNGG	2 cut(s)	436, 520
BstSFI	CTRYAG	1 cut(s)	486
BstV1I	GCAGC	2 cut(s)	152, 683
BstV2I	GAAGAC	1 cut(s)	177
BstX2I	RGATCY	2 cut(s)	402, 747
BstXI	CCANNNNNNTGG	1 cut(s)	701
BstYI	RGATCY	2 cut(s)	402, 747
BsuRI	GGCC	4 cut(s)	358, 479, 574, 594
BtgI	CCRYGG	1 cut(s)	76
BtsCI	GGATG	4 cut(s)	10, 81, 688, 706
BtsI	GCAGTG	1 cut(s)	573
BtsIMutI	CAGTG	2 cut(s)	27, 573
Cfr13I	GGNCC	2 cut(s)	73, 592
Csp6I	GTAC	3 cut(s)	155, 538, 630
CspCI	CAANNNNNGTGG	3 cut(s)	456, 491, 766
CviAII	CATG	6 cut(s)	38, 53, 77, 86, 104, 458
CviQI	GTAC	3 cut(s)	155, 538, 630
DdeI	CTNAG	1 cut(s)	338
DpnI	GATC	3 cut(s)	404, 483, 749
DpnII	GATC	3 cut(s)	402, 481, 747
EaeI	YGGCCR	1 cut(s)	477
Eco130I	CCWWGG	1 cut(s)	76
Eco47I	GGWCC	1 cut(s)	73
EcoRI	GAATTC	1 cut(s)	709
EcoRII	CCWGG	2 cut(s)	436, 520
EcoT14I	CCWWGG	1 cut(s)	76
ErhI	CCWWGG	1 cut(s)	76
Esp3I	CGTCTC	1 cut(s)	210
FaeI	CATG	6 cut(s)	41, 56, 80, 89, 107, 461
FatI	CATG	6 cut(s)	37, 52, 76, 85, 103, 457
FauI	CCCGC	1 cut(s)	114
Fnu4HI	GCNGC	2 cut(s)	141, 672
FokI	GGATG	4 cut(s)	17, 68, 695, 713
Fsp4HI	GCNGC	2 cut(s)	141, 672
GluI	GCNGC	2 cut(s)	141, 672
GsuI	CTGGAG	1 cut(s)	137
HaeIII	GGCC	4 cut(s)	358, 479, 574, 594
HapII	CCGG	2 cut(s)	11, 737
Hin1II	CATG	6 cut(s)	41, 56, 80, 89, 107, 461
HinfI	GANTC	6 cut(s)	293, 340, 348, 497, 688, 733
HpaII	CCGG	2 cut(s)	11, 737
HphI	GGTGA	5 cut(s)	79, 158, 541, 683, 751
Hpy188I	TCNGA	5 cut(s)	285, 339, 582, 708, 758
Hpy188III	TCNNGA	5 cut(s)	11, 116, 215, 548, 714
HpyAV	CCTTC	4 cut(s)	8, 160, 256, 755
HpyCH4III	ACNGT	2 cut(s)	22, 221
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	3 cut(s)	488, 587, 671
HpyF10VI	GCNNNNNNNGC	1 cut(s)	485
HpyF3I	CTNAG	1 cut(s)	338
HpySE526I	ACGT	1 cut(s)	157
Hsp92II	CATG	6 cut(s)	41, 56, 80, 89, 107, 461
Kpn2I	TCCGGA	1 cut(s)	10
Kzo9I	GATC	3 cut(s)	402, 481, 747
LmnI	GCTCC	1 cut(s)	118
Lsp1109I	GCAGC	2 cut(s)	152, 683
LweI	GCATC	2 cut(s)	90, 627
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	5 cut(s)	124, 146, 502, 689, 739
MalI	GATC	3 cut(s)	404, 483, 749
MbiI	CCGCTC	1 cut(s)	121
MboI	GATC	3 cut(s)	402, 481, 747
MboII	GAAGA	6 cut(s)	175, 182, 544, 622, 667, 742
MflI	RGATCY	2 cut(s)	402, 747
MluCI	AATT	4 cut(s)	311, 576, 636, 709
MlyI	GAGTC	2 cut(s)	349, 697
MmeI	TCCRAC	2 cut(s)	214, 228
MnlI	CCTC	8 cut(s)	63, 90, 354, 365, 369, 484, 544, 564
MroI	TCCGGA	1 cut(s)	10
MslI	CAYNNNNRTG	3 cut(s)	23, 57, 699
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	2 cut(s)	11, 737
MspR9I	CCNGG	2 cut(s)	438, 522
MvaI	CCWGG	2 cut(s)	438, 522
MwoI	GCNNNNNNNGC	1 cut(s)	485
NcoI	CCATGG	1 cut(s)	76
NdeII	GATC	3 cut(s)	402, 481, 747
NlaIII	CATG	6 cut(s)	41, 56, 80, 89, 107, 461
NlaIV	GGNNCC	3 cut(s)	74, 404, 419
NmuCI	GTSAC	3 cut(s)	146, 689, 739
NspV	TTCGAA	1 cut(s)	351
OliI	CACNNNNGTG	1 cut(s)	23
PfeI	GAWTC	4 cut(s)	293, 348, 497, 733
PfoI	TCCNGGA	1 cut(s)	520
PkrI	GCNGC	2 cut(s)	142, 673
PleI	GAGTC	2 cut(s)	348, 696
PpsI	GAGTC	2 cut(s)	348, 696
Psp6I	CCWGG	2 cut(s)	436, 520
PspGI	CCWGG	2 cut(s)	436, 520
PspN4I	GGNNCC	3 cut(s)	74, 404, 419
PspPI	GGNCC	2 cut(s)	73, 592
PstI	CTGCAG	1 cut(s)	490
PsuI	RGATCY	2 cut(s)	402, 747
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	3 cut(s)	156, 539, 631
RsaNI	GTAC	3 cut(s)	155, 538, 630
RseI	CAYNNNNRTG	3 cut(s)	23, 57, 699
SatI	GCNGC	2 cut(s)	141, 672
Sau3AI	GATC	3 cut(s)	402, 481, 747
Sau96I	GGNCC	2 cut(s)	73, 592
SchI	GAGTC	2 cut(s)	349, 697
ScrFI	CCNGG	2 cut(s)	438, 522
SfaNI	GCATC	2 cut(s)	90, 627
SfcI	CTRYAG	1 cut(s)	486
SfuI	TTCGAA	1 cut(s)	351
SinI	GGWCC	1 cut(s)	73
SmiMI	CAYNNNNRTG	3 cut(s)	23, 57, 699
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
Sse9I	AATT	4 cut(s)	311, 576, 636, 709
SsiI	CCGC	2 cut(s)	121, 768
StyD4I	CCNGG	2 cut(s)	436, 520
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	2 cut(s)	22, 221
TaiI	ACGT	1 cut(s)	160
TaqI	TCGA	4 cut(s)	214, 346, 351, 495
TasI	AATT	4 cut(s)	311, 576, 636, 709
TfiI	GAWTC	4 cut(s)	293, 348, 497, 733
TscAI	CASTG	2 cut(s)	27, 573
TseFI	GTSAC	3 cut(s)	146, 689, 739
TseI	GCWGC	2 cut(s)	140, 671
Tsp45I	GTSAC	3 cut(s)	146, 689, 739
TspDTI	ATGAA	4 cut(s)	92, 474, 548, 623
TspRI	CASTG	2 cut(s)	27, 573
VpaK11BI	GGWCC	1 cut(s)	73
XapI	RAATTY	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.