Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005276.1

Orthogroup ID

OG0001247

Physical Location & Seq

Genomic Coordinates Forward (+)

70377 .. 72842

Gene Structure 2466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005276.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

atggagcagcaaattgcaaaagaaaagcctgcaatttctttcgagtatgagctctttgaagaccctgatcatctaacaattgttgtagctacactcactccaactagtccctggatcaatcctgcctcattgaactttaagtaccgaattggacagggcccctttggtgatgtatggttagcaactcatcaccagtcagcagatgattatgatgaatatcatgaggtagcagttaagatgttgcatcctttgatggaggaggacagagaaaagtttctgcacaagttcgaaaagttatttttcaagttccgcagactgtgcggtgtttgttggtttcatggtatctcaatcattgatggaaggatctgcatcgctatgaaattttatgaggggtcagttggtgaccgagttgctaggttgaagggtggaaaacttcaactttttgatgttttaaggtatgggattgagttggcaaaaggaatttcagaattgcattcactagggcttctggtgctaaatttgaagccgtccaacatccttgtagatgaacacggccagacaacggcaaaatttcatcttctgttgtctgaatgtgccgaggcatcgccgcgcatgccatgccaggcacatgctgcgcagaactcacacaacggaaataggtatttctgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0007034 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0012505 GO:0016192 GO:0016197 GO:0016301 GO:0016310 GO:0016567 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019787 GO:0023051 GO:0023052 GO:0023057 GO:0031410 GO:0031982 GO:0031984 GO:0032446 GO:0032502 GO:0032870 GO:0032940 GO:0033993 GO:0036211 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045324 GO:0046903 GO:0046907 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0065007 GO:0070647 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0097708 GO:0098791 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1901701 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DOG1 Pkinase Pkinase_Tyr

Protein Analysis

223

Amino Acids

25.45

Weight (kDa)

6.3

Isoelectric Point (pI)

32.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32250 AT4G32250 AT4G32250
fragaria_vesca	FvH4_2g28950 FvH4_2g28950 FvH4_2g28950 FvH4_2g28950 FvH4_2g28950 FvH4_2g28950 FvH4_2g28950 FvH4_6g29550 FvH4_6g29550 FvH4_6g29550
malus_domestica	MD15G1126200.v1.1 MD17G1213100.v1.1
prunus_persica	Prupe.1G482100_v2.0.a1 Prupe.1G482100_v2.0.a1 Prupe.3G088500_v2.0.a1
pyrus_communis	pycom15g11390 pycom17g21810
rosa_chinensis	RchiOBHm_Chr2g0121151 RchiOBHm_Chr2g0135111 RchiOBHm_Chr4g0394841 RchiOBHm_Chr6g0297781
rosa_laevigata	RLG00000011562 RLG00000019442
rosa_multiflora	Rmu_sc0001385.1_g000016 Rmu_sc0002674.1_g000013 Rmu_sc0002674.1_g000015 Rmu_sc0003543.1_g000004 Rmu_sc0003741.1_g000001 Rmu_sc0005276.1_g000013 Rmu_sc0024743.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109480 Rroxscaffold_7G00170200 Rroxscaffold_7G00179050
rosa_rugosa	Rorug02G0322800 Rorug02G0322900 Rorug02G0323000 Rorug02G0323100 Rorug02G0323200 Rorug06G0275400 Rorug06G0275400 Rorug06G0275400 Rorug06G0275400
rosa_samantha	Rh2AG371800 Rh2BG379700 Rh2CG358800 Rh2DG396300 Rh4CG052500 Rh6AG386000 Rh6BG394600 Rh6CG400300 Rh6DG386800
rosa_wichuraiana	Rw0G013570 Rw6G033650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	636
AccII	CGCG	1 cut(s)	610
AciI	CCGC	3 cut(s)	310, 321, 608
AclWI	GGATC	2 cut(s)	122, 371
AcoI	YGGCCR	1 cut(s)	553
AcsI	RAATTY	4 cut(s)	380, 480, 517, 569
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	562
AgsI	TTSAA	6 cut(s)	59, 133, 304, 421, 437, 523
AhlI	ACTAGT	1 cut(s)	104
AjnI	CCWGG	2 cut(s)	110, 621
AluBI	AGCT	2 cut(s)	52, 89
AluI	AGCT	2 cut(s)	52, 89
Alw21I	GWGCWC	1 cut(s)	54
AlwI	GGATC	2 cut(s)	122, 371
AoxI	GGCC	2 cut(s)	157, 553
ApaI	GGGCCC	1 cut(s)	161
ApeKI	GCWGC	2 cut(s)	7, 632
ApoI	RAATTY	4 cut(s)	380, 480, 517, 569
Asp700I	GAANNNNTTC	1 cut(s)	273
AspLEI	GCGC	2 cut(s)	612, 637
AspS9I	GGNCC	2 cut(s)	157, 158
AsuHPI	GGTGA	3 cut(s)	179, 182, 413
AsuII	TTCGAA	1 cut(s)	288
BaeGI	GKGCMC	1 cut(s)	161
BanII	GRGCYC	2 cut(s)	54, 161
BbsI	GAAGAC	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	2 cut(s)	19, 619
BccI	CCATC	2 cut(s)	247, 350
BceAI	ACGGC	3 cut(s)	511, 568, 579
BciT130I	CCWGG	2 cut(s)	112, 623
BclI	TGATCA	1 cut(s)	67
BcuI	ACTAGT	1 cut(s)	104
BfaI	CTAG	3 cut(s)	105, 414, 500
BisI	GCNGC	3 cut(s)	8, 608, 633
BlsI	GCNGC	3 cut(s)	9, 609, 634
Bme1390I	CCNGG	2 cut(s)	112, 623
BmgT120I	GGNCC	2 cut(s)	157, 158
BmiI	GGNNCC	2 cut(s)	159, 160
BmrFI	CCNGG	2 cut(s)	112, 623
BmsI	GCATC	3 cut(s)	253, 378, 611
BpiI	GAAGAC	1 cut(s)	66
Bpu14I	TTCGAA	1 cut(s)	288
BsaBI	GATNNNNATC	2 cut(s)	216, 368
BsaJI	CCNNGG	2 cut(s)	110, 597
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bsc4I	CCNNNNNNNGG	1 cut(s)	562
Bse1I	ACTGG	1 cut(s)	193
Bse8I	GATNNNNATC	2 cut(s)	216, 368
BseBI	CCWGG	2 cut(s)	112, 623
BseDI	CCNNGG	2 cut(s)	110, 597
BseGI	GGATG	2 cut(s)	244, 534
BseJI	GATNNNNATC	2 cut(s)	216, 368
BseLI	CCNNNNNNNGG	1 cut(s)	562
BseNI	ACTGG	1 cut(s)	193
BseRI	GAGGAG	1 cut(s)	272
BseSI	GKGCMC	1 cut(s)	161
BseXI	GCAGC	2 cut(s)	19, 619
BsgI	GTGCAG	1 cut(s)	263
Bsh1236I	CGCG	1 cut(s)	610
BshFI	GGCC	2 cut(s)	159, 555
BsiHKAI	GWGCWC	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	93
BslI	CCNNNNNNNGG	1 cut(s)	562
BsmFI	GGGAC	1 cut(s)	93
BsmI	GAATGC	1 cut(s)	493
BsnI	GGCC	2 cut(s)	159, 555
Bsp119I	TTCGAA	1 cut(s)	288
Bsp120I	GGGCCC	1 cut(s)	157
Bsp1286I	GDGCHC	2 cut(s)	54, 161
Bsp143I	GATC	3 cut(s)	67, 114, 363
BspACI	CCGC	3 cut(s)	310, 321, 608
BspANI	GGCC	2 cut(s)	159, 555
BspFNI	CGCG	1 cut(s)	610
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	2 cut(s)	159, 160
BspPI	GGATC	2 cut(s)	122, 371
BspT104I	TTCGAA	1 cut(s)	288
BsrI	ACTGG	1 cut(s)	193
BssECI	CCNNGG	2 cut(s)	110, 597
BssMI	GATC	3 cut(s)	67, 114, 363
Bst2UI	CCWGG	2 cut(s)	112, 623
Bst4CI	ACNGT	1 cut(s)	318
BstAPI	GCANNNNNTGC	3 cut(s)	318, 618, 632
BstBI	TTCGAA	1 cut(s)	288
BstC8I	GCNNGC	2 cut(s)	30, 614
BstEII	GGTNACC	1 cut(s)	401
BstF5I	GGATG	2 cut(s)	244, 534
BstFNI	CGCG	1 cut(s)	610
BstHHI	GCGC	2 cut(s)	612, 637
BstKTI	GATC	3 cut(s)	70, 117, 366
BstMBI	GATC	3 cut(s)	67, 114, 363
BstMWI	GCNNNNNNNGC	5 cut(s)	318, 511, 613, 618, 632
BstNI	CCWGG	2 cut(s)	112, 623
BstNSI	RCATGY	2 cut(s)	616, 632
BstPI	GGTNACC	1 cut(s)	401
BstSCI	CCNGG	2 cut(s)	110, 621
BstSLI	GKGCMC	1 cut(s)	161
BstUI	CGCG	1 cut(s)	610
BstV1I	GCAGC	2 cut(s)	19, 619
BstV2I	GAAGAC	1 cut(s)	66
BstX2I	RGATCY	1 cut(s)	363
BstYI	RGATCY	1 cut(s)	363
BsuRI	GGCC	2 cut(s)	159, 555
BtgZI	GCGATG	2 cut(s)	355, 588
BtsCI	GGATG	2 cut(s)	244, 534
Cac8I	GCNNGC	2 cut(s)	30, 614
CciI	TCATGA	1 cut(s)	220
CfoI	GCGC	2 cut(s)	612, 637
Cfr13I	GGNCC	2 cut(s)	157, 158
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	5 cut(s)	221, 338, 613, 618, 629
CviJI	RGCY	7 cut(s)	28, 52, 89, 159, 505, 526, 555
CviKI_1	RGCY	7 cut(s)	28, 52, 89, 159, 505, 526, 555
CviQI	GTAC	1 cut(s)	142
DpnI	GATC	3 cut(s)	69, 116, 365
DpnII	GATC	3 cut(s)	67, 114, 363
EaeI	YGGCCR	1 cut(s)	553
Ecl136II	GAGCTC	1 cut(s)	52
Eco24I	GRGCYC	2 cut(s)	54, 161
Eco53kI	GAGCTC	1 cut(s)	52
Eco91I	GGTNACC	1 cut(s)	401
EcoICRI	GAGCTC	1 cut(s)	52
EcoO109I	RGGNCCY	2 cut(s)	157, 158
EcoO65I	GGTNACC	1 cut(s)	401
EcoRII	CCWGG	2 cut(s)	110, 621
EcoT38I	GRGCYC	2 cut(s)	54, 161
FaeI	CATG	5 cut(s)	224, 341, 616, 621, 632
FaqI	GGGAC	1 cut(s)	93
FatI	CATG	5 cut(s)	220, 337, 612, 617, 628
FbaI	TGATCA	1 cut(s)	67
Fnu4HI	GCNGC	3 cut(s)	8, 608, 633
FokI	GGATG	2 cut(s)	231, 521
FriOI	GRGCYC	2 cut(s)	54, 161
Fsp4HI	GCNGC	3 cut(s)	8, 608, 633
FspBI	CTAG	3 cut(s)	105, 414, 500
FspI	TGCGCA	1 cut(s)	636
GlaI	GCGC	2 cut(s)	611, 636
GluI	GCNGC	3 cut(s)	8, 608, 633
HaeIII	GGCC	2 cut(s)	159, 555
HhaI	GCGC	2 cut(s)	612, 637
Hin1II	CATG	5 cut(s)	224, 341, 616, 621, 632
Hin6I	GCGC	2 cut(s)	610, 635
HinP1I	GCGC	2 cut(s)	610, 635
HphI	GGTGA	3 cut(s)	179, 182, 413
Hpy188I	TCNGA	2 cut(s)	487, 589
Hpy188III	TCNNGA	1 cut(s)	221
HpyAV	CCTTC	2 cut(s)	354, 415
HpyCH4III	ACNGT	1 cut(s)	318
HpyCH4V	TGCA	6 cut(s)	17, 32, 244, 280, 369, 493
HpyF10VI	GCNNNNNNNGC	5 cut(s)	318, 511, 613, 618, 632
Hsp92II	CATG	5 cut(s)	224, 341, 616, 621, 632
HspAI	GCGC	2 cut(s)	610, 635
Ksp22I	TGATCA	1 cut(s)	67
Kzo9I	GATC	3 cut(s)	67, 114, 363
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	2 cut(s)	19, 619
LweI	GCATC	3 cut(s)	253, 378, 611
MaeI	CTAG	3 cut(s)	105, 414, 500
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	3 cut(s)	69, 116, 365
MboI	GATC	3 cut(s)	67, 114, 363
MboII	GAAGA	2 cut(s)	71, 569
MfeI	CAATTG	1 cut(s)	78
MflI	RGATCY	1 cut(s)	363
MhlI	GDGCHC	2 cut(s)	54, 161
MluCI	AATT	9 cut(s)	12, 33, 78, 147, 380, 480, 488, 517, 569
MmeI	TCCRAC	2 cut(s)	125, 555
MnlI	CCTC	6 cut(s)	136, 217, 250, 253, 382, 592
MroXI	GAANNNNTTC	1 cut(s)	273
MseI	TTAA	3 cut(s)	138, 234, 452
MslI	CAYNNNNRTG	1 cut(s)	374
MspR9I	CCNGG	2 cut(s)	112, 623
MunI	CAATTG	1 cut(s)	78
Mva1269I	GAATGC	1 cut(s)	493
MvaI	CCWGG	2 cut(s)	112, 623
MvnI	CGCG	1 cut(s)	610
MwoI	GCNNNNNNNGC	5 cut(s)	318, 511, 613, 618, 632
NdeII	GATC	3 cut(s)	67, 114, 363
NlaIII	CATG	5 cut(s)	224, 341, 616, 621, 632
NlaIV	GGNNCC	2 cut(s)	159, 160
NmeAIII	GCCGAG	1 cut(s)	622
NmuCI	GTSAC	1 cut(s)	401
NsbI	TGCGCA	1 cut(s)	636
NspI	RCATGY	2 cut(s)	616, 632
NspV	TTCGAA	1 cut(s)	288
PaeI	GCATGC	1 cut(s)	616
PagI	TCATGA	1 cut(s)	220
PctI	GAATGC	1 cut(s)	493
PdmI	GAANNNNTTC	1 cut(s)	273
PkrI	GCNGC	3 cut(s)	9, 609, 634
Psp124BI	GAGCTC	1 cut(s)	54
Psp6I	CCWGG	2 cut(s)	110, 621
PspEI	GGTNACC	1 cut(s)	401
PspGI	CCWGG	2 cut(s)	110, 621
PspN4I	GGNNCC	2 cut(s)	159, 160
PspOMI	GGGCCC	1 cut(s)	157
PspPI	GGNCC	2 cut(s)	157, 158
PsrI	GAACNNNNNNTAC	2 cut(s)	125, 157
PsuI	RGATCY	1 cut(s)	363
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
RseI	CAYNNNNRTG	1 cut(s)	374
SacI	GAGCTC	1 cut(s)	54
SaqAI	TTAA	3 cut(s)	138, 234, 452
SatI	GCNGC	3 cut(s)	8, 608, 633
Sau3AI	GATC	3 cut(s)	67, 114, 363
Sau96I	GGNCC	2 cut(s)	157, 158
ScrFI	CCNGG	2 cut(s)	112, 623
SduI	GDGCHC	2 cut(s)	54, 161
SetI	ASST	6 cut(s)	54, 91, 228, 419, 458, 662
SfaNI	GCATC	3 cut(s)	253, 378, 611
SfuI	TTCGAA	1 cut(s)	288
SmiMI	CAYNNNNRTG	1 cut(s)	374
SpeI	ACTAGT	1 cut(s)	104
SphI	GCATGC	1 cut(s)	616
Sse9I	AATT	9 cut(s)	12, 33, 78, 147, 380, 480, 488, 517, 569
SsiI	CCGC	3 cut(s)	310, 321, 608
SspMI	CTAG	3 cut(s)	105, 414, 500
SstI	GAGCTC	1 cut(s)	54
StyD4I	CCNGG	2 cut(s)	110, 621
TaaI	ACNGT	1 cut(s)	318
TaqI	TCGA	2 cut(s)	42, 288
TaqII	GACCGA	1 cut(s)	420
TasI	AATT	9 cut(s)	12, 33, 78, 147, 380, 480, 488, 517, 569
TauI	GCSGC	1 cut(s)	610
Tru1I	TTAA	3 cut(s)	138, 234, 452
Tru9I	TTAA	3 cut(s)	138, 234, 452
TseFI	GTSAC	1 cut(s)	401
TseI	GCWGC	2 cut(s)	7, 632
Tsp45I	GTSAC	1 cut(s)	401
TspDTI	ATGAA	5 cut(s)	228, 326, 392, 561, 563
TspGWI	ACGGA	1 cut(s)	666
XapI	RAATTY	4 cut(s)	380, 480, 517, 569
XceI	RCATGY	2 cut(s)	616, 632
XcmI	CCANNNNNNNNNTGG	1 cut(s)	108
XmnI	GAANNNNTTC	1 cut(s)	273
XspI	CTAG	3 cut(s)	105, 414, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.