Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001247

Physical Location & Seq

Genomic Coordinates Reverse (-)

39553649 .. 39553999

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0322900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGTTGGCTAATTCAACGGCCATAGCAGTGAAAGAGCTTAAAAGTCTGGAGCAGGGAGACGAGCAATTTCGTGCAGAAGTCAGAACTATTGGTGCAGTCCAACACATCAATCTTGTTCGCTTGCGGGGGTTTTGTGCAGAATCTTCAAAAAGACTTTTAGTTTATGACTACATGCCAAATGGTTCTCTACAATCTATTGTAGTTGAAAAGAAATCACTCATATTAGATTGGAAAGCCAAATATCAAATTGCAATAGGGACTGCCAAAGGATTGGCTTACCTTCATGACGAGTGTAGAGACTGCAACATACACTGTGACATTAAGCCTGAGAACATTTTGCTTGTTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0007034 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0012505 GO:0016192 GO:0016197 GO:0016301 GO:0016310 GO:0016567 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019787 GO:0023051 GO:0023052 GO:0023057 GO:0031410 GO:0031982 GO:0031984 GO:0032446 GO:0032502 GO:0032870 GO:0032940 GO:0033993 GO:0036211 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045324 GO:0046903 GO:0046907 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0065007 GO:0070647 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0097708 GO:0098791 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1901701 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DOG1 Pkinase Pkinase_Tyr

Protein Analysis

116

Amino Acids

13.0

Weight (kDa)

7.67

Isoelectric Point (pI)

51.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	4 - 114	9.3e-18	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	5 - 114	2.6e-19	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32250 AT4G32250 AT4G32250
fragaria_vesca	FvH4_2g28950 FvH4_2g28950 FvH4_2g28950 FvH4_2g28950 FvH4_2g28950 FvH4_2g28950 FvH4_2g28950 FvH4_6g29550 FvH4_6g29550 FvH4_6g29550
malus_domestica	MD15G1126200.v1.1 MD17G1213100.v1.1
prunus_persica	Prupe.1G482100_v2.0.a1 Prupe.1G482100_v2.0.a1 Prupe.3G088500_v2.0.a1
pyrus_communis	pycom15g11390 pycom17g21810
rosa_chinensis	RchiOBHm_Chr2g0121151 RchiOBHm_Chr2g0135111 RchiOBHm_Chr4g0394841 RchiOBHm_Chr6g0297781
rosa_laevigata	RLG00000011562 RLG00000019442
rosa_multiflora	Rmu_sc0001385.1_g000016 Rmu_sc0002674.1_g000013 Rmu_sc0002674.1_g000015 Rmu_sc0003543.1_g000004 Rmu_sc0003741.1_g000001 Rmu_sc0005276.1_g000013 Rmu_sc0024743.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109480 Rroxscaffold_7G00170200 Rroxscaffold_7G00179050
rosa_rugosa	Rorug02G0322800 Rorug02G0322900 Rorug02G0323000 Rorug02G0323100 Rorug02G0323200 Rorug06G0275400 Rorug06G0275400 Rorug06G0275400 Rorug06G0275400
rosa_samantha	Rh2AG371800 Rh2BG379700 Rh2CG358800 Rh2DG396300 Rh4CG052500 Rh6AG386000 Rh6BG394600 Rh6CG400300 Rh6DG386800
rosa_wichuraiana	Rw0G013570 Rw6G033650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	124
AcoI	YGGCCR	1 cut(s)	18
AgsI	TTSAA	3 cut(s)	15, 147, 206
AluBI	AGCT	1 cut(s)	37
AluI	AGCT	1 cut(s)	37
Alw26I	GTCTC	2 cut(s)	51, 291
AoxI	GGCC	1 cut(s)	18
BceAI	ACGGC	1 cut(s)	33
BcoDI	GTCTC	2 cut(s)	51, 291
BpmI	CTGGAG	1 cut(s)	68
BseMII	CTCAG	1 cut(s)	318
BsgI	GTGCAG	3 cut(s)	93, 114, 156
BshFI	GGCC	1 cut(s)	20
BslFI	GGGAC	1 cut(s)	271
BsmAI	GTCTC	2 cut(s)	51, 291
BsmBI	CGTCTC	1 cut(s)	51
BsmFI	GGGAC	1 cut(s)	271
BsnI	GGCC	1 cut(s)	20
BspACI	CCGC	1 cut(s)	124
BspANI	GGCC	1 cut(s)	20
BspCNI	CTCAG	1 cut(s)	319
BspHI	TCATGA	1 cut(s)	283
Bst4CI	ACNGT	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	122
BstDEI	CTNAG	1 cut(s)	327
BstMAI	GTCTC	2 cut(s)	51, 291
BstNSI	RCATGY	1 cut(s)	175
BstXI	CCANNNNNNTGG	1 cut(s)	271
BsuRI	GGCC	1 cut(s)	20
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	2 cut(s)	33, 310
Cac8I	GCNNGC	1 cut(s)	122
CciI	TCATGA	1 cut(s)	283
CviAII	CATG	2 cut(s)	172, 284
CviJI	RGCY	6 cut(s)	8, 20, 37, 236, 275, 325
CviKI_1	RGCY	6 cut(s)	8, 20, 37, 236, 275, 325
DdeI	CTNAG	1 cut(s)	327
EaeI	YGGCCR	1 cut(s)	18
Esp3I	CGTCTC	1 cut(s)	51
FaeI	CATG	2 cut(s)	175, 287
FaiI	YATR	7 cut(s)	23, 165, 173, 221, 285, 308, 349
FaqI	GGGAC	1 cut(s)	271
FatI	CATG	2 cut(s)	171, 283
FauI	CCCGC	1 cut(s)	117
GsuI	CTGGAG	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	20
Hin1II	CATG	2 cut(s)	175, 287
HinfI	GANTC	1 cut(s)	140
Hpy188I	TCNGA	1 cut(s)	83
Hpy188III	TCNNGA	2 cut(s)	47, 284
HpyAV	CCTTC	1 cut(s)	290
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4V	TGCA	6 cut(s)	74, 95, 137, 251, 303, 347
HpyF3I	CTNAG	1 cut(s)	327
Hsp92II	CATG	2 cut(s)	175, 287
LmnI	GCTCC	1 cut(s)	49
LpnPI	CCDG	3 cut(s)	32, 38, 339
MaeIII	GTNAC	1 cut(s)	314
MboII	GAAGA	1 cut(s)	135
MluCI	AATT	3 cut(s)	10, 65, 246
MmeI	TCCRAC	1 cut(s)	124
MseI	TTAA	2 cut(s)	39, 321
MslI	CAYNNNNRTG	1 cut(s)	26
NlaIII	CATG	2 cut(s)	175, 287
NmuCI	GTSAC	1 cut(s)	314
NspI	RCATGY	1 cut(s)	175
PagI	TCATGA	1 cut(s)	283
PfeI	GAWTC	1 cut(s)	140
RseI	CAYNNNNRTG	1 cut(s)	26
SaqAI	TTAA	2 cut(s)	39, 321
SetI	ASST	2 cut(s)	39, 282
SmiMI	CAYNNNNRTG	1 cut(s)	26
Sse9I	AATT	3 cut(s)	10, 65, 246
SsiI	CCGC	1 cut(s)	124
TaaI	ACNGT	1 cut(s)	314
TasI	AATT	3 cut(s)	10, 65, 246
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	2 cut(s)	39, 321
Tru9I	TTAA	2 cut(s)	39, 321
TscAI	CASTG	2 cut(s)	33, 317
TseFI	GTSAC	1 cut(s)	314
Tsp45I	GTSAC	1 cut(s)	314
TspDTI	ATGAA	1 cut(s)	272
TspRI	CASTG	2 cut(s)	33, 317
XceI	RCATGY	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.