Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001247

Physical Location & Seq

Genomic Coordinates Reverse (-)

39555031 .. 39555210

Gene Structure 180 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0323100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGGTAGCAATATGGTCAACTAATTCAACATCAAAGGGTAATAATTCTACCATAGCCATGCTTCTTGACAATGGAAACTTTGTCATAAGAGATGCATTTGATTCGTCTGCTGTTATATGGCAGAGTTTCGATCACCCAACAGATACTTGGTTGCCAAGTGCAAAGCTTGGATATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0007034 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0012505 GO:0016192 GO:0016197 GO:0016301 GO:0016310 GO:0016567 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019787 GO:0023051 GO:0023052 GO:0023057 GO:0031410 GO:0031982 GO:0031984 GO:0032446 GO:0032502 GO:0032870 GO:0032940 GO:0033993 GO:0036211 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045324 GO:0046903 GO:0046907 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0065007 GO:0070647 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0097708 GO:0098791 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1901701 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DOG1 Pkinase Pkinase_Tyr

Protein Analysis

59

Amino Acids

6.51

Weight (kDa)

4.66

Isoelectric Point (pI)

16.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	3 - 59	7.8e-20	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32250 AT4G32250 AT4G32250
fragaria_vesca	FvH4_2g28950 FvH4_2g28950 FvH4_2g28950 FvH4_2g28950 FvH4_2g28950 FvH4_2g28950 FvH4_2g28950 FvH4_6g29550 FvH4_6g29550 FvH4_6g29550
malus_domestica	MD15G1126200.v1.1 MD17G1213100.v1.1
prunus_persica	Prupe.1G482100_v2.0.a1 Prupe.1G482100_v2.0.a1 Prupe.3G088500_v2.0.a1
pyrus_communis	pycom15g11390 pycom17g21810
rosa_chinensis	RchiOBHm_Chr2g0121151 RchiOBHm_Chr2g0135111 RchiOBHm_Chr4g0394841 RchiOBHm_Chr6g0297781
rosa_laevigata	RLG00000011562 RLG00000019442
rosa_multiflora	Rmu_sc0001385.1_g000016 Rmu_sc0002674.1_g000013 Rmu_sc0002674.1_g000015 Rmu_sc0003543.1_g000004 Rmu_sc0003741.1_g000001 Rmu_sc0005276.1_g000013 Rmu_sc0024743.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109480 Rroxscaffold_7G00170200 Rroxscaffold_7G00179050
rosa_rugosa	Rorug02G0322800 Rorug02G0322900 Rorug02G0323000 Rorug02G0323100 Rorug02G0323200 Rorug06G0275400 Rorug06G0275400 Rorug06G0275400 Rorug06G0275400
rosa_samantha	Rh2AG371800 Rh2BG379700 Rh2CG358800 Rh2DG396300 Rh4CG052500 Rh6AG386000 Rh6BG394600 Rh6CG400300 Rh6DG386800
rosa_wichuraiana	Rw0G013570 Rw6G033650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	27
AluBI	AGCT	1 cut(s)	166
AluI	AGCT	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	125
BcgI	CGANNNNNNTGC	2 cut(s)	84, 118
BmsI	GCATC	1 cut(s)	82
Bsp143I	GATC	1 cut(s)	130
BssMI	GATC	1 cut(s)	130
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
CviAII	CATG	1 cut(s)	58
CviJI	RGCY	2 cut(s)	56, 166
CviKI_1	RGCY	2 cut(s)	56, 166
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
EcoT22I	ATGCAT	1 cut(s)	97
FaeI	CATG	1 cut(s)	61
FaiI	YATR	7 cut(s)	13, 53, 59, 86, 116, 118, 174
FatI	CATG	1 cut(s)	57
Hin1II	CATG	1 cut(s)	61
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	1 cut(s)	101
HphI	GGTGA	1 cut(s)	125
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188III	TCNNGA	1 cut(s)	65
Hpy8I	GTNNAC	1 cut(s)	18
HpyCH4V	TGCA	2 cut(s)	95, 161
Hsp92II	CATG	1 cut(s)	61
Kzo9I	GATC	1 cut(s)	130
LweI	GCATC	1 cut(s)	82
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MluCI	AATT	3 cut(s)	22, 43, 175
Mph1103I	ATGCAT	1 cut(s)	97
MseI	TTAA	1 cut(s)	178
MslI	CAYNNNNRTG	1 cut(s)	56
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	1 cut(s)	61
NsiI	ATGCAT	1 cut(s)	97
PfeI	GAWTC	1 cut(s)	101
RseI	CAYNNNNRTG	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	178
Sau3AI	GATC	1 cut(s)	130
SetI	ASST	1 cut(s)	168
SfaNI	GCATC	1 cut(s)	82
SgeI	CNNG	4 cut(s)	70, 77, 159, 168
SmiMI	CAYNNNNRTG	1 cut(s)	56
Sse9I	AATT	3 cut(s)	22, 43, 175
TaqI	TCGA	1 cut(s)	129
TasI	AATT	3 cut(s)	22, 43, 175
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	1 cut(s)	178
Tru9I	TTAA	1 cut(s)	178
XcmI	CCANNNNNNNNNTGG	1 cut(s)	144
Zsp2I	ATGCAT	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.