Rorug02G0323200

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001247
Physical Location & Seq
Reverse (-)
39568336 .. 39569439
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0323200.1

Sequence Viewer

Length: 1104 bp
ATGGAGACTACTTGGATTGTGGTTGGAGTACTTGCAGGCACCGTTACTCTCTTTAGCATTGTGCTGGTAGTTGTCAGACATAGACAGTCTATTGGAGCATTGGTGTCTTTTGAGGATTCTCTAGTGCTGTTCAACTACAGAGATTTAACAAAAGCAACAGAAAACTTGTCAGAGAAACTTGGAGAAGGAGCTTTCGGTTCAGTTTTCAAGGGGATATTGCCTGATTCAACTCCCATAGCAGTGAAACAACTAAAGAGTCTGTTGCAGGGTGAAAAGCAATTCCAGGTTGAAGTGAGAACTCTTGGGGCGATCCAACACATTAAACTTGTTCGCCTACGTGGGTTTTGTGCAGATTCTACAAGAAGACTCTTAGTTTATGACTACGCGCCAAATGGCTCTCTACAATCTGTTCTAGTTCAAAACCATCCACTAATCTTAGATTGGAAAGCAAGATATCATATTGCCATAGGCATTGCGAGAGGATTGGCTTACCTCCATGAGGACTGTAGAGATTGTATAATACACTGTGACATTAAGCCAGAGAACATTTTGTTGGATGAAGAATATAGTCCAAAAGTTGCAGATTTTGGTCTTGCAAAACTCATTGGCAGACACCATAGTCGAGTTCTGACAACTGTGAGAGGGACTGTTGGATATCTAGCACCAGAATGGCTTACAGGTGAAGCCATCACTCCAAAAGCCGATGACTTCAGCTATGGAAAGTTGCTGTTTGAGGTTATATCTGGAAGGAGAAACAGTGAAGGGTTAGATGATGGATTGGAAAACTACACTCCTACTCGGGTTGCAAATGTAGTAACTAAAGGACAAGATGTTCTTACCCTAGTTGATTACAGGTTGGGAGGTAATGCTGACAAAGATGAACTCATTAGAGCATGCAAAGTTGCGTGTTGGTGTATTCAATATGAGGAGAAGGATAGGCCAACAATGAGGCAGGTTGTTCAAATTCTCGAAGGAGCTTTAGATGTTGGTATACCCCCGATCCCAAAGTTTCTCCAACACCTTCCCGGAAGTTCAATGGACGCAAATCAAGCAATCAATTACCAAGAACCTACTTCAAGTTCAGAAATCATATTCCTTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0007034 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0012505 GO:0016192 GO:0016197 GO:0016301 GO:0016310 GO:0016567 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019787 GO:0023051 GO:0023052 GO:0023057 GO:0031410 GO:0031982 GO:0031984 GO:0032446 GO:0032502 GO:0032870 GO:0032940 GO:0033993 GO:0036211 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045324 GO:0046903 GO:0046907 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0065007 GO:0070647 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0097708 GO:0098791 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1901701 GO:1905957 GO:1905958
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1 Pkinase Pkinase_Tyr

Protein Analysis

367

Amino Acids

40.76

Weight (kDa)

6.02

Isoelectric Point (pI)

34.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 56 - 323 7e-41 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 57 - 321 1e-46 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 618
Acc36I ACCTGC 1 cut(s) 943
AccB1I GGYRCC 1 cut(s) 38
AccI GTMKAC 1 cut(s) 991
AccII CGCG 1 cut(s) 386
AclWI GGATC 2 cut(s) 304, 994
AcsI RAATTY 1 cut(s) 963
AcuI CTGAAG 1 cut(s) 694
AfaI GTAC 1 cut(s) 30
AfiI CCNNNNNNNGG 1 cut(s) 499
AgsI TTSAA 9 cut(s) 133, 208, 228, 290, 419, 920, 962, 1035, 1077
AjnI CCWGG 1 cut(s) 282
AjuI GAANNNNNNNTTGG 2 cut(s) 536, 568
AloI GAACNNNNNNTCC 2 cut(s) 816, 848
AluBI AGCT 4 cut(s) 191, 714, 977, 1101
AluI AGCT 4 cut(s) 191, 714, 977, 1101
AlwI GGATC 2 cut(s) 304, 994
Ama87I CYCGRG 1 cut(s) 798
AoxI GGCC 1 cut(s) 938
ApoI RAATTY 1 cut(s) 963
AspLEI GCGC 1 cut(s) 388
AsuC2I CCSGG 1 cut(s) 1026
AsuHPI GGTGA 2 cut(s) 281, 692
AvaI CYCGRG 1 cut(s) 798
BanI GGYRCC 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 370
BccI CCATC 3 cut(s) 432, 695, 767
BciT130I CCWGG 1 cut(s) 284
BcnI CCSGG 1 cut(s) 1026
BfaI CTAG 4 cut(s) 122, 413, 659, 842
BfmI CTRYAG 2 cut(s) 136, 505
BfuAI ACCTGC 1 cut(s) 943
BmcAI AGTACT 1 cut(s) 30
Bme1390I CCNGG 2 cut(s) 284, 1026
BmeT110I CYCGRG 1 cut(s) 798
BmiI GGNNCC 1 cut(s) 40
BmrFI CCNGG 2 cut(s) 284, 1026
BpiI GAAGAC 1 cut(s) 370
Bpu10I CCTNAGC 1 cut(s) 1097
BpuMI CCSGG 1 cut(s) 1026
BsaAI YACGTR 1 cut(s) 338
BsaXI ACNNNNNCTCC 4 cut(s) 87, 117, 742, 772
Bsc4I CCNNNNNNNGG 1 cut(s) 499
Bse3DI GCAATG 1 cut(s) 471
BseBI CCWGG 1 cut(s) 284
BseGI GGATG 2 cut(s) 424, 562
BseLI CCNNNNNNNGG 1 cut(s) 499
BseMI GCAATG 1 cut(s) 471
BseRI GAGGAG 1 cut(s) 941
BsgI GTGCAG 1 cut(s) 369
Bsh1236I CGCG 1 cut(s) 386
BshFI GGCC 1 cut(s) 940
BshNI GGYRCC 1 cut(s) 38
BsiHKCI CYCGRG 1 cut(s) 798
BsiSI CCGG 1 cut(s) 1026
BslFI GGGAC 1 cut(s) 658
BslI CCNNNNNNNGG 1 cut(s) 499
BsmFI GGGAC 1 cut(s) 658
BsnI GGCC 1 cut(s) 940
BsoBI CYCGRG 1 cut(s) 798
Bsp143I GATC 2 cut(s) 309, 999
BspANI GGCC 1 cut(s) 940
BspFNI CGCG 1 cut(s) 386
BspLI GGNNCC 1 cut(s) 40
BspMI ACCTGC 1 cut(s) 943
BspPI GGATC 2 cut(s) 304, 994
BspT107I GGYRCC 1 cut(s) 38
BsrDI GCAATG 1 cut(s) 471
BssMI GATC 2 cut(s) 309, 999
BssNAI GTATAC 1 cut(s) 992
Bst1107I GTATAC 1 cut(s) 992
Bst2UI CCWGG 1 cut(s) 284
Bst4CI ACNGT 7 cut(s) 43, 87, 506, 527, 637, 649, 758
BstBAI YACGTR 1 cut(s) 338
BstC8I GCNNGC 2 cut(s) 37, 895
BstDEI CTNAG 3 cut(s) 370, 436, 1097
BstENI CCTNNNNNAGG 1 cut(s) 497
BstF5I GGATG 2 cut(s) 424, 562
BstFNI CGCG 1 cut(s) 386
BstHHI GCGC 1 cut(s) 388
BstKTI GATC 2 cut(s) 312, 1002
BstMBI GATC 2 cut(s) 309, 999
BstMWI GCNNNNNNNGC 1 cut(s) 1049
BstNI CCWGG 1 cut(s) 284
BstNSI RCATGY 1 cut(s) 897
BstSCI CCNGG 2 cut(s) 282, 1024
BstSFI CTRYAG 2 cut(s) 136, 505
BstUI CGCG 1 cut(s) 386
BstV2I GAAGAC 1 cut(s) 370
BstZ17I GTATAC 1 cut(s) 992
BsuRI GGCC 1 cut(s) 940
BtsCI GGATG 2 cut(s) 424, 562
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 3 cut(s) 246, 523, 763
BveI ACCTGC 1 cut(s) 943
Cac8I GCNNGC 2 cut(s) 37, 895
CfoI GCGC 1 cut(s) 388
CseI GACGC 1 cut(s) 1049
Csp6I GTAC 1 cut(s) 29
CviAII CATG 2 cut(s) 497, 894
CviQI GTAC 1 cut(s) 29
DdeI CTNAG 3 cut(s) 370, 436, 1097
DpnI GATC 2 cut(s) 311, 1001
DpnII GATC 2 cut(s) 309, 999
DrdI GACNNNNNNGTC 1 cut(s) 618
DseDI GACNNNNNNGTC 1 cut(s) 618
Eco32I GATATC 2 cut(s) 455, 656
Eco57I CTGAAG 1 cut(s) 694
Eco88I CYCGRG 1 cut(s) 798
EcoNI CCTNNNNNAGG 1 cut(s) 497
EcoRII CCWGG 1 cut(s) 282
EcoRV GATATC 2 cut(s) 455, 656
FaeI CATG 2 cut(s) 500, 897
FalI AAGNNNNNCTT 2 cut(s) 819, 851
FaqI GGGAC 1 cut(s) 658
FatI CATG 2 cut(s) 496, 893
FblI GTMKAC 1 cut(s) 991
FokI GGATG 2 cut(s) 411, 569
FspBI CTAG 4 cut(s) 122, 413, 659, 842
GlaI GCGC 1 cut(s) 387
HaeIII GGCC 1 cut(s) 940
HapII CCGG 1 cut(s) 1026
HgaI GACGC 1 cut(s) 1049
HhaI GCGC 1 cut(s) 388
Hin1II CATG 2 cut(s) 500, 897
Hin6I GCGC 1 cut(s) 386
HinP1I GCGC 1 cut(s) 386
HinfI GANTC 5 cut(s) 116, 224, 256, 353, 366
HpaII CCGG 1 cut(s) 1026
HphI GGTGA 2 cut(s) 281, 692
Hpy166II GTNNAC 1 cut(s) 992
Hpy188I TCNGA 4 cut(s) 77, 172, 630, 1084
Hpy188III TCNNGA 2 cut(s) 744, 968
Hpy8I GTNNAC 1 cut(s) 992
HpyAV CCTTC 6 cut(s) 179, 741, 755, 925, 965, 1031
HpyCH4III ACNGT 7 cut(s) 43, 87, 506, 527, 637, 649, 758
HpyCH4IV ACGT 1 cut(s) 337
HpyCH4V TGCA 7 cut(s) 35, 265, 350, 581, 596, 806, 897
HpyF10VI GCNNNNNNNGC 1 cut(s) 1049
HpyF3I CTNAG 3 cut(s) 370, 436, 1097
HpySE526I ACGT 1 cut(s) 337
Hsp92II CATG 2 cut(s) 500, 897
HspAI GCGC 1 cut(s) 386
Kzo9I GATC 2 cut(s) 309, 999
LmnI GCTCC 3 cut(s) 95, 188, 974
MaeI CTAG 4 cut(s) 122, 413, 659, 842
MaeII ACGT 1 cut(s) 337
MaeIII GTNAC 3 cut(s) 43, 527, 814
MalI GATC 2 cut(s) 311, 1001
MboI GATC 2 cut(s) 309, 999
MboII GAAGA 2 cut(s) 375, 572
MluCI AATT 3 cut(s) 278, 963, 1057
MlyI GAGTC 2 cut(s) 265, 360
MmeI TCCRAC 5 cut(s) 4, 337, 534, 631, 1039
MnlI CCTC 9 cut(s) 106, 473, 493, 503, 635, 727, 854, 919, 942
MseI TTAA 3 cut(s) 146, 321, 534
MslI CAYNNNNRTG 2 cut(s) 239, 667
MspI CCGG 1 cut(s) 1026
MspR9I CCNGG 2 cut(s) 284, 1026
MvaI CCWGG 1 cut(s) 284
MvnI CGCG 1 cut(s) 386
MwoI GCNNNNNNNGC 1 cut(s) 1049
NciI CCSGG 1 cut(s) 1026
NdeII GATC 2 cut(s) 309, 999
NlaIII CATG 2 cut(s) 500, 897
NlaIV GGNNCC 1 cut(s) 40
NmuCI GTSAC 1 cut(s) 527
NspI RCATGY 1 cut(s) 897
PaeI GCATGC 1 cut(s) 897
PfeI GAWTC 3 cut(s) 116, 224, 353
PfoI TCCNGGA 1 cut(s) 1024
PleI GAGTC 2 cut(s) 264, 360
PpsI GAGTC 2 cut(s) 264, 360
Ppu21I YACGTR 1 cut(s) 338
Psp6I CCWGG 1 cut(s) 282
PspGI CCWGG 1 cut(s) 282
PspN4I GGNNCC 1 cut(s) 40
RsaI GTAC 1 cut(s) 30
RsaNI GTAC 1 cut(s) 29
RseI CAYNNNNRTG 2 cut(s) 239, 667
SaqAI TTAA 3 cut(s) 146, 321, 534
Sau3AI GATC 2 cut(s) 309, 999
ScaI AGTACT 1 cut(s) 30
SchI GAGTC 2 cut(s) 265, 360
ScrFI CCNGG 2 cut(s) 284, 1026
SfcI CTRYAG 2 cut(s) 136, 505
SmiMI CAYNNNNRTG 2 cut(s) 239, 667
SphI GCATGC 1 cut(s) 897
Sse9I AATT 3 cut(s) 278, 963, 1057
SspMI CTAG 4 cut(s) 122, 413, 659, 842
StyD4I CCNGG 2 cut(s) 282, 1024
TaaI ACNGT 7 cut(s) 43, 87, 506, 527, 637, 649, 758
TaiI ACGT 1 cut(s) 340
TaqI TCGA 2 cut(s) 622, 969
TasI AATT 3 cut(s) 278, 963, 1057
TatI WGTACW 1 cut(s) 28
TfiI GAWTC 3 cut(s) 116, 224, 353
Tru1I TTAA 3 cut(s) 146, 321, 534
Tru9I TTAA 3 cut(s) 146, 321, 534
TscAI CASTG 3 cut(s) 246, 530, 763
TseFI GTSAC 1 cut(s) 527
Tsp45I GTSAC 1 cut(s) 527
TspDTI ATGAA 2 cut(s) 573, 894
TspRI CASTG 3 cut(s) 246, 530, 763
XagI CCTNNNNNAGG 1 cut(s) 497
XapI RAATTY 1 cut(s) 963
XceI RCATGY 1 cut(s) 897
XmiI GTMKAC 1 cut(s) 991
XspI CTAG 4 cut(s) 122, 413, 659, 842
ZrmI AGTACT 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.